Gene

KWMTBOMO09209  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA003401

Annotation

PREDICTED:_pumilio_homolog_2_isoform_X1_[Bombyx_mori]

Location

Bomo_Chr15(+):13307898-13313702      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 2.349

CDS

ATGTCGCCACTCGCCCGCGAGGCCTCCGAGTTCGCGAGTCGTGTACAGAACGTAGAGGAGAGTGGAGGAGCAGAGTGTTGGAGCGCGGAGGTATGTCGTGTTACAGGCGGCGCGAGCGGCGCGCGGCGGGACTCGCTGGAGTTCGGCGGCGGCGGCGCCCTGCACGAGTACGCACGCAAGTGGGGCCCCTCGCCGCTGTCCCCGCCGCTGGGCGCCGCGCTGGGGCCCGTGGGGCTGCGGCCCGTGTCCGCCGCGCCCGGCGCCGAGACCGCCAAGTACAGAGCTGTGAGCAGTTTAGCCCAGGGACTCACCTCTAATGGAATGTTTGGTTCGTCTTCATCGCTACTCAGCAAACTCGGTGGAGTTGGAACTATCTCAGAGCTGGTGAGCGGAGGCGTGGGCGCGCTGGTGGGCGACAAGCCGGCCGCGGGGCGCTCGCGTCTGCTCGAGGACTTCCGCAACAACCGCTTCCCGAACCTGCAGCTGCGCGACCTCGCCAACCACATCGTAGAGTTCTCGCAGGACCAGCACGGCTCCAGATTTATACAACAGAAACTAGAAAGAGCAACAGTCCAAGAGAAACAAATGGTATTTAACGAAATTATCGGGGCAGCGTACAGCCTCATGACGGACGTCTTTGGGAATTATGTAATACAGAAATTTTTCGAGTTTGGCACGACCGAACAAAAAACCACACTTGCACAAAAGGTGCGCGGTCACGTGCTCAACCTGGCGCTACAGATGTACGGGTGCCGGGTCATACAGAAGGCGCTCGAGTCTATCCCGCCTGAACAACAACAAGAGGTCGTCAGAGAACTCGACGGACACGTGCTTAAATGTGTCAAGGACCAAAACGGGAACCATGTTGTTCAAAAGTGCATAGAATGCGTGGAGCCGTCAGCGTTACAGTTCATAATAAACGCATTCGCGGGTCAGGTGTACGCGCTGTCCACGCACCCGTACGGCTGCCGCGTCATACAGCGCATCCTCGAGCACTGCACGCCCGAGCAGACCGCGCCCGTGCTCAACGAGCTGCATGCCCACACAGACCAACTAATCACGGATCAATACGGGAACTACGTGGTGCAACACGTGCTGGAGCACGGCGCCGGCGAGGACCGGTCGCGCCTGGTGGCCGCCGTGCGCGGGAAGGTGCTGCAGCTCTCGCAGCACAAGTTCGCGTCCAACGTCGTCGAGAAGTGCGTCACGCACGCCACGCGCAACGAGCGCGCGCTGCTCATCGACGAGCTGTGCGGCTTCAACGACAACGCTCTCCACGTCATGATGAAGGACCAGTTCGCGAACTACGTCGTGCAAAAGATGATCGACGTCGCGGAGCCGACGCAGCGTAAAGTGTTGATGCACAAGATCCGACCGCACATCGGCTCGTTGCGCAAGTACACGTACGGCAAGCACATCATCGCGAAGCTGGAGAAGTTCTTCATGAAGGCGCCGGAGCTCGGCCCCATCGGCCCGCCGCCGCCGGGCGCCGTGCTTTAG

Protein

MSPLAREASEFASRVQNVEESGGAECWSAEVCRVTGGASGARRDSLEFGGGGALHEYARKWGPSPLSPPLGAALGPVGLRPVSAAPGAETAKYRAVSSLAQGLTSNGMFGSSSSLLSKLGGVGTISELVSGGVGALVGDKPAAGRSRLLEDFRNNRFPNLQLRDLANHIVEFSQDQHGSRFIQQKLERATVQEKQMVFNEIIGAAYSLMTDVFGNYVIQKFFEFGTTEQKTTLAQKVRGHVLNLALQMYGCRVIQKALESIPPEQQQEVVRELDGHVLKCVKDQNGNHVVQKCIECVEPSALQFIINAFAGQVYALSTHPYGCRVIQRILEHCTPEQTAPVLNELHAHTDQLITDQYGNYVVQHVLEHGAGEDRSRLVAAVRGKVLQLSQHKFASNVVEKCVTHATRNERALLIDELCGFNDNALHVMMKDQFANYVVQKMIDVAEPTQRKVLMHKIRPHIGSLRKYTYGKHIIAKLEKFFMKAPELGPIGPPPPGAVL

Uniprot

H9J1L4   D3KYU8   A0A0E3X7N6   A0A194PJE3   A0A2A4KAU3   A0A2H1WED6   + More
A0A194RP10   A0A3S2NRR3   C5HJY4   S4PIU5   A0A1Y1L7R0   A0A1Y1LBK5   A0A1Y1LA28   A0A0T6BBB1   D7EK09   N6TWD0   A0A0M9A5W5   A0A088AHR2   V9I9J7   V9IBC2   A0A2A3ECL7   A0A0L7RIA2   A0A154P1N3   A0A3L8DPN0   E2BAS7   A0A026WYT1   A0A067RCN8   A0A0C9PXU7   F4X6R7   A0A0C9RDH2   E2A2K0   A0A195CJ30   A0A195F1P5   A0A158NFU5   A0A151XC80   A0A195B2R5   A0A195E7N0   A0A2J7PUZ1   A0A2J7PUY0   A0A2J7PUY4   A0A0K8SI81   A0A0K8SJ85   A0A1B6HM81   A0A0A9WS98   A0A0A9W9J8   A0A1B6DZD3   A0A1B6DDZ5   A0A1B6E3X5   A0A1B6DGA0   A0A1B6DC35   A0A1B6D0L4   A0A0K8SKU4   A0A1B6C9X6   A0A1B6CKA2   A0A0K8T505   A0A1B6DXN6   A0A1B0CCF0   A0A1Q3FUD7   A0A182H595   A0A182IWW5  

Pubmed

19121390    26354079    23622113    28004739    18362917    19820115    + More
23537049    30249741    20798317    24508170    24845553    21719571    21347285    25401762    26483478   

EMBL

BABH01023785    AB547451    BAI77478.1    KP236741    AKB96197.1    KQ459602    + More
KPI93546.1    NWSH01000012    PCG80860.1    ODYU01008115    SOQ51438.1    KQ460106    KPJ17756.1    RSAL01000116    RVE46846.1    FJ461590    ACQ99191.1    GAIX01000064    JAA92496.1    GEZM01062418    JAV69729.1    GEZM01062417    JAV69730.1    GEZM01062419    JAV69728.1    LJIG01002344    KRT84596.1    KQ971342    EFA12956.2    APGK01052381    APGK01052382    APGK01052383    KB741212    ENN72701.1    KQ435727    KOX77865.1    JR037432    AEY57765.1    JR037433    AEY57766.1    KZ288282    PBC29523.1    KQ414584    KOC70559.1    KQ434786    KZC05040.1    QOIP01000005    RLU22357.1    GL446831    EFN87212.1    KK107063    EZA61172.1    KK852591    KDR20699.1    GBYB01006323    JAG76090.1    GL888818    EGI57849.1    GBYB01006320    JAG76087.1    GL436083    EFN72338.1    KQ977754    KYN00074.1    KQ981864    KYN34301.1    ADTU01014744    ADTU01014745    ADTU01014746    ADTU01014747    ADTU01014748    ADTU01014749    KQ982314    KYQ57963.1    KQ976662    KYM78494.1    KQ979568    KYN20834.1    NEVH01021187    PNF20144.1    PNF20145.1    PNF20146.1    GBRD01012979    GBRD01012972    JAG52854.1    GBRD01012976    GBRD01012975    JAG52850.1    GECU01031899    JAS75807.1    GBHO01040443    GBHO01040441    GBHO01040440    GBHO01032960    GBHO01015005    GBHO01007303    GBHO01007299    GBHO01005012    GBRD01012974    GBRD01011894    JAG03161.1    JAG03163.1    JAG03164.1    JAG10644.1    JAG28599.1    JAG36301.1    JAG36305.1    JAG38592.1    JAG52852.1    GBHO01045118    GBHO01040827    GBHO01040444    GBHO01040442    GBHO01040439    GBHO01040436    GBHO01007302    GBHO01007300    GBRD01016997    GBRD01012980    JAF98485.1    JAG02777.1    JAG03160.1    JAG03162.1    JAG03165.1    JAG03168.1    JAG36302.1    JAG36304.1    JAG48830.1    GEDC01006287    JAS31011.1    GEDC01013483    JAS23815.1    GEDC01004662    JAS32636.1    GEDC01012582    JAS24716.1    GEDC01014054    JAS23244.1    GEDC01018056    JAS19242.1    GBRD01011893    JAG53931.1    GEDC01027006    JAS10292.1    GEDC01023456    JAS13842.1    GBRD01012978    GBRD01005207    JAG60614.1    GEDC01006860    JAS30438.1    AJWK01006670    GFDL01003831    JAV31214.1    JXUM01110979    JXUM01110980    JXUM01110981    JXUM01110982    JXUM01110983    JXUM01110984    KQ565461    KXJ70939.1   

Proteomes

UP000005204    UP000053268    UP000218220    UP000053240    UP000283053    UP000007266    + More
UP000019118    UP000053105    UP000005203    UP000242457    UP000053825    UP000076502    UP000279307    UP000008237    UP000053097    UP000027135    UP000007755    UP000000311    UP000078542    UP000078541    UP000005205    UP000075809    UP000078540    UP000078492    UP000235965    UP000092461    UP000069940    UP000249989    UP000075880   

PRIDE

H9J1L4    D3KYU8    C5HJY4   

Pfam

PF00806   PUF        + More
PF06487   SAP18

Interpro

IPR033712   Pumilio_RNA-bd        + More
IPR001313   Pumilio_RNA-bd_rpt       
IPR016024   ARM-type_fold       
IPR011989   ARM-like       
IPR033133   PUM-HD       
IPR010516   SAP18       

SUPFAM

SSF48371   SSF48371       

Gene 3D

1.25.10.10    

CDD

cd07920  Pumilio

ProteinModelPortal

H9J1L4   D3KYU8   A0A0E3X7N6   A0A194PJE3   A0A2A4KAU3   A0A2H1WED6   + More
A0A194RP10   A0A3S2NRR3   C5HJY4   S4PIU5   A0A1Y1L7R0   A0A1Y1LBK5   A0A1Y1LA28   A0A0T6BBB1   D7EK09   N6TWD0   A0A0M9A5W5   A0A088AHR2   V9I9J7   V9IBC2   A0A2A3ECL7   A0A0L7RIA2   A0A154P1N3   A0A3L8DPN0   E2BAS7   A0A026WYT1   A0A067RCN8   A0A0C9PXU7   F4X6R7   A0A0C9RDH2   E2A2K0   A0A195CJ30   A0A195F1P5   A0A158NFU5   A0A151XC80   A0A195B2R5   A0A195E7N0   A0A2J7PUZ1   A0A2J7PUY0   A0A2J7PUY4   A0A0K8SI81   A0A0K8SJ85   A0A1B6HM81   A0A0A9WS98   A0A0A9W9J8   A0A1B6DZD3   A0A1B6DDZ5   A0A1B6E3X5   A0A1B6DGA0   A0A1B6DC35   A0A1B6D0L4   A0A0K8SKU4   A0A1B6C9X6   A0A1B6CKA2   A0A0K8T505   A0A1B6DXN6   A0A1B0CCF0   A0A1Q3FUD7   A0A182H595   A0A182IWW5  

PDB

5KLA     E-value=8.70929e-166,     Score=1499

KEGG

100302035    K17943 pumilio RNA-binding family | (RefSeq) Pum; pumilio

GO

GO:0003723   GO:0005488   GO:0032259   GO:0006412   GO:0006260   GO:0008408   GO:0003677   GO:0016020   GO:0016876   GO:0043039  

Length:

499

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.1778

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00744

outside

1  -  499

 

 

Pi

235.234894

Theta

178.060424

Tajima's D

1.007313

CLR

0.143253

CSRT

0.661966901654917

Interpretation

Uncertain