Silkworm Genome Informatics Database

Gene

KWMTBOMO09208

Pre Gene Modal

BGIBMGA003399

Annotation

PREDICTED:_maternal_protein_pumilio-like_[Bombyx_mori]

Location

Bomo_Chr15(+):13237204-13255636 View in EpiBrowser

Location in the cell

Nuclear Reliability : 3.571

CDS

ATGCTCGAACCTCACGGTAGCCCAATGAAGTGGCCAGGTACCGGAGTAGAAGAAGAGGCGGGAGAAGCAGGGTTGCAAAACGTGCGCCCTTCACAAACTCGCAGTCAGGACGATGCCTCAGTGCATTACGTATTCCAACGTGAACAACAAGAAGGAGAACTCGCTTCCCTAGCTCATAAGCAAAGGTGGGCTGTTGGAGAAGATACTATTGCTGAGAATCAAGATAAATGGAAAAATACCACACCTATAACAATGAATAATATACATCAACAAGGACCAGCTATACAGCTTAAAAATTCCCAAACAAATCAACAACAATACATTAATCAAGCAATTGCTTCTTCGGTTTCAACGTTGGCTATGAACCCCTCTGTTATTGGCAGTCACCCTGCACATCTAACAACCAACATGGTTCACACACAACTGGCACCAATGCAAAACCATACATTGGGTAGCAGTTTGACAATTCAAAACAGTGCAATGATGATACCTGCACTTCAAAGCATTCAAAACCCAGCACAATTAGGTCAACAAGGTCTTTATGATATTCATCAACATCATGCTAACCCAATGCAAGCCATGAATGGCATTGGTAAAACAGGAGAGCATCTCATGTATTTAAGTCAGGCAGGAATGTTAGCTCCCGGAACTAACCAGTTTTTGCAACAAGGACAAAGTCAACTTGGGCTTACACCTGTTGCTACAATAAGGAATCAGATTGCACCTGCTGCAAAAAAGCTATGGGACAAGGGGCCAGGCGCCGGTGGCGATACCAAAGGCCCTCCGCACCTGCCTCCACTGCAATTGAACCCCGACCAAATGTGGCGTGATCCTACTTGGTCTGCTCAAGCTGTCGAACACAATGTCAGCGTGGCAATGATGGGAAACCGTCGTGGGGTTACTTTTCCCGGTGGAGACGCCGGCAGCATTCTCTCTCCTCGTGACACAGCTGGACTTGGTGTAAAAATGGTCGAATATGTCTTGGGAGGATCACCTACAGGAGGTGTTTACGTAGGCGGTGGAGAGAAGGTGGCCGGCGTGGTGGCGGGCCTGCGCGGCATGGTGCTGGAGGAGCGCGCCGAAGATAAAGCGACTTCGCCCTTCGACAAGGACCTGCACGAGCTACACGAGCACGGCTCCCTGCCCAACGGGATACACAACGGACAAGAGGACGATAAAGCTTTTAACCGCACGCCCGGGTCGCGCCAACCGTCGCCCGCGGAGGAGGAGGGGGCGGGGGGCGCGCGCAACGGCGAGCCGCCCGTGTTCCCGCTGCACCCGCACCACGCGCTGCCGCAGCCGCAGCCCATGCACCATCTGCCGCATCTCTCGCACCCACAGCCACACCCGGGGATGTTAGGCGTGGCTCCACTACAGGGCCTACCGCATCCGCAACACGCACAGATTCACCCAGGAATGACACTAAACGACTCTATGAACCAACACATCGAACTTGTTTTACAAATGGAACAACATCCTCAATTCGACAACAGCAGCTTTGCGAGCTCGCAACAGTACGGCGGCGCGGTGGGAGCGGTGAGCGCGGTGAGTGGGGTGGGCGCAGAGAGCGCAGGCGGGGGACTCGTCAACGGCGCGCCCTCGGCGCCCGACTCCGCGCATCACACGCCCTTCGACGTGCAGTAG

Protein

MLEPHGSPMKWPGTGVEEEAGEAGLQNVRPSQTRSQDDASVHYVFQREQQEGELASLAHKQRWAVGEDTIAENQDKWKNTTPITMNNIHQQGPAIQLKNSQTNQQQYINQAIASSVSTLAMNPSVIGSHPAHLTTNMVHTQLAPMQNHTLGSSLTIQNSAMMIPALQSIQNPAQLGQQGLYDIHQHHANPMQAMNGIGKTGEHLMYLSQAGMLAPGTNQFLQQGQSQLGLTPVATIRNQIAPAAKKLWDKGPGAGGDTKGPPHLPPLQLNPDQMWRDPTWSAQAVEHNVSVAMMGNRRGVTFPGGDAGSILSPRDTAGLGVKMVEYVLGGSPTGGVYVGGGEKVAGVVAGLRGMVLEERAEDKATSPFDKDLHELHEHGSLPNGIHNGQEDDKAFNRTPGSRQPSPAEEEGAGGARNGEPPVFPLHPHHALPQPQPMHHLPHLSHPQPHPGMLGVAPLQGLPHPQHAQIHPGMTLNDSMNQHIELVLQMEQHPQFDNSSFASSQQYGGAVGAVSAVSGVGAESAGGGLVNGAPSAPDSAHHTPFDVQ

Uniprot

H9J1L2 A0A2A4K4Z1 A0A2A4K5A1 A0A437AXE2 A0A212ENQ4 A0A0L7LTW0 + More
A0A0E3X7N6 A0A194RJZ2 U5EQG3 A0A0L7RIA2 A0A336MXD2

Pubmed

19121390 22118469 26227816 26354079

EMBL

BABH01023782 NWSH01000144 PCG79096.1 PCG79094.1 RSAL01000296 RVE42827.1 + More
AGBW02013624 OWR43106.1 JTDY01000092 KOB78923.1 KP236741 AKB96197.1 KQ460106 KPJ17754.1 GANO01003278 JAB56593.1 KQ414584 KOC70559.1 UFQS01002593 UFQT01002593 SSX14328.1 SSX33739.1

Proteomes

UP000005204 UP000218220 UP000283053 UP000007151 UP000037510 UP000053240 + More
UP000053825

PRIDE

H9J1L2

Pfam

PF00806 PUF

Interpro

IPR033133   PUM-HD        + More
IPR011989   ARM-like
IPR001313   Pumilio_RNA-bd_rpt
IPR016024   ARM-type_fold
IPR033712   Pumilio_RNA-bd

SUPFAM

SSF48371 SSF48371

Gene 3D

1.25.10.10

CDD

cd07920 Pumilio

ProteinModelPortal

H9J1L2 A0A2A4K4Z1 A0A2A4K5A1 A0A437AXE2 A0A212ENQ4 A0A0L7LTW0 + More
A0A0E3X7N6 A0A194RJZ2 U5EQG3 A0A0L7RIA2 A0A336MXD2

KEGG

101742087 K17943 pumilio RNA-binding family | (RefSeq) maternal protein pumilio-like

GO

GO:0003743 GO:0003723

Length:

547

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.01467

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00051

outside

1 - 547

Pi

278.654766

Theta

200.017903

Tajima's D

1.018309

CLR

0.229073

CSRT

0.658567071646418

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics