Silkworm Genome Informatics Database

Gene

KWMTBOMO09178

Pre Gene Modal

BGIBMGA003388

Annotation

PREDICTED:_lysosomal_acid_phosphatase-like_[Papilio_machaon]

Location

Bomo_Chr15(+):12673996-12688142 View in EpiBrowser

Location in the cell

Nuclear Reliability : 2.1

CDS

ATGCAATGCGTCGATAAAACGGACCCACCCCCCACAGAGCCATTATTTCCTCAACCTACCTCAGTATGCACAGTAGCCATAAAACTTCCTCCCTTCTGGCCTGATCGGCCTGCAATTTGGTTTGCTCAGGTAGAGGCACAATTCTCGATTTCGGGCATCTCCGCTGACCTGACTAAATTTAACTACGTGATTGCTCAGTTAGATACCCGAGTTATTGGGGAGGTAGAAGACATTATTCTCCAACCACCACCAGAGGACAAATATGGTCGCCTCAAATCCGAGTTGATCCGTAGGTTGTCCACGTCTGAGGAGCAACGTGTCAGGCAACTTGTCAGTGATGTTGAGTTGGGTGACCGCCGTCCTTCGCAGTTTTTACGTCATCTTAGATCATTGGCAGGAAACACCCTCACTGATGAAAATTTGCTTCGCCAGCTATGGATGCGTCGCCTCCCACAACATCTCCAAGCAATTTTGGCCGCCCAATCAGAACTCTCGCTGGACAAAGTCGCTGAGCTAGCGGACAAAATTTTGGAAGTTTCGCCTGAAGCAACATCTAAACAAATGGAATATGATAATGATGATAACTCATGGAGAAGACCGTCCACCACTCAGCAGAATAAATGTCATCGGATTCCAAAGAGGTCGACCACAACTGCAGTAGTAGTGCTGGGCTTGGCGGTACTGAGCTGTCTCCTTGGATACTGCGTTTTGAGCGAAACATTACCTTATGAATCTAAAACTCTTCGTTTGGTTATTATCTTGTTTCGTCATGGTGCCCGAACTCCGGTTTCAACATATAGAAGTGATCCCTACAGGAACTACCAGTGGCCCGATGGATATGGTAGTCTTACAAATGTGGGAAAGATGCAATTGTACGAATTAGGAAAGAAATACCGCAGCTACTATGCCAACTACATACCCGAGGACTATTATGAGAAAAACGTGTACGTACAGAGCAGCGACAAGTCTCGTTGCATGATGAGTGCGTACACATTCCTGGCGGGACTATTCCCTCCGTCGCAACGGCAAACTTGGCATGCGGAGTTGCCATGGCAACCAATACCGGTCCACTCACTGCCCCGGCTTCTTGACAATATAGTGGCAGGCACGAAGCCTTGTGCGAAATGGAAAGCCATGTACGCGGAGCAGCTAGCTGAGAAAAATTCCGATCCGAAATTCAATGAGGTATTCGAGAATTTATCGAAATACACGAACCAGACGGTCCGCAGTGTTCTCGACGTCGACTACTTGTACAGCACCTTGGCCACGGAACAGGAAGCTGGCCTCAAACTTCCGGAATGGACAAAAAATTTGTTTCCTCACAAAATGAGACTACCCTTCATGCTGAGTTTAGCTTTGCTTTCTTACAACGAGTCCATGCAACGGCTTCAAATAGGTCCGATGCTCAACGAGATCCGTGAGAACATGAACAATACGTTTAATCCAAGCTCTGGGTCGGAACGGTTGCTGCTGATGTACTCGGGGCACGACGTGACCGTGGTGGCCTTGTGGAGGGCGCTCGGCTTCGGCGAGCTGCTGGAGCCGGAGTACGGAGCCAGCCTCGTACTCGAACTGCACGAGGACATCGAACAGAATCTCTTCTTCGTTAAGGCTTTCTATCGTAACAATACTAAAACAGAGATGCCGATGGAGCTAAAGCTGCCGTTCTGCGAAGATCCATGTGGTTATAAACAATTTTACGACCACATAAGCAACCTGATTCCTGATGATTGGGAAACTGAGTGTGAGAATAATGTTCAAGGTGCATAA

Protein

MQCVDKTDPPPTEPLFPQPTSVCTVAIKLPPFWPDRPAIWFAQVEAQFSISGISADLTKFNYVIAQLDTRVIGEVEDIILQPPPEDKYGRLKSELIRRLSTSEEQRVRQLVSDVELGDRRPSQFLRHLRSLAGNTLTDENLLRQLWMRRLPQHLQAILAAQSELSLDKVAELADKILEVSPEATSKQMEYDNDDNSWRRPSTTQQNKCHRIPKRSTTTAVVVLGLAVLSCLLGYCVLSETLPYESKTLRLVIILFRHGARTPVSTYRSDPYRNYQWPDGYGSLTNVGKMQLYELGKKYRSYYANYIPEDYYEKNVYVQSSDKSRCMMSAYTFLAGLFPPSQRQTWHAELPWQPIPVHSLPRLLDNIVAGTKPCAKWKAMYAEQLAEKNSDPKFNEVFENLSKYTNQTVRSVLDVDYLYSTLATEQEAGLKLPEWTKNLFPHKMRLPFMLSLALLSYNESMQRLQIGPMLNEIRENMNNTFNPSSGSERLLLMYSGHDVTVVALWRALGFGELLEPEYGASLVLELHEDIEQNLFFVKAFYRNNTKTEMPMELKLPFCEDPCGYKQFYDHISNLIPDDWETECENNVQGA

Uniprot

NA

ProteinModelPortal

NA

PDB

1RPT E-value=1.20579e-45, Score=463

KEGG

101740485 K14410 lysosomal acid phosphatase [EC:3.1.3.2] | (RefSeq) prostatic acid phosphatase

PATHWAY

00740    Riboflavin metabolism - Bombyx mori (domestic silkworm)
01100    Metabolic pathways - Bombyx mori (domestic silkworm)
04142    Lysosome - Bombyx mori (domestic silkworm)

GO

GO:0003993 GO:0004672 GO:0006468 GO:0005524 GO:0005739 GO:0016776 GO:0006811 GO:0016020 GO:0016876 GO:0043039

Length:

589

Number of predicted TMHs:

1

Exp number of AAs in TMHs:

18.7455599999999

Exp number, first 60 AAs:

0.11604

Total prob of N-in:

0.81174

inside

1 - 218

TMhelix

219 - 241

outside

242 - 589

Pi

234.207647

Theta

170.351902

Tajima's D

0.40381

CLR

1.231069

CSRT

0.484525773711314

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics