Gene

KWMTBOMO09177

Pre Gene Modal

BGIBMGA003364

Annotation

PREDICTED:_retinol_dehydrogenase_12-like_[Papilio_machaon]

Location

Bomo_Chr15(-):12667550-12671365      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 1.057

CDS

ATGCCTTTATTTAGTGGACGATGTTTAAGCACAGTAAAGTTGGTCGGTAAAACTGCACTGATCACTGGCTGCAACACCGGAATAGGGAAGGAAACCGCTCTGGATTTTTACAAAAGAGGTGCTCGTGTTATTATGGCATGTCGCAGCTTAGAAAGAGCAGAAGAAGCTAAAGCTGACATTGAAAAGTCCTGTAATAATATAAATGAAACTGGGCATCTGGTAATAGCCAAGTGTGATCTCACATCCTTAAAGTCTGTACGAGAATTTGCACAAAACATTTTGGATACCGAACCACAAATCAATATCCTTGTTAACAATGCCGGAGTGATGATGTGTCCCAAGGGAGAAACTGAAGATGGTTTCGAAATACAGTTTGCTACAAACCATTTAGCTCATTTTCTTTTAACACTGTTGCTTTTACCTAGAATTCGAAACAGTAAACCGGCTAGGGTTGTAACTGTATCCTCCAGAGCTCATATTCGATATGGCATCAATTTTGATGATTTGAATTACAAAAATCGACCATATGTTCCTGCTGAAGCGTATTCCCAAAGCAAGATTGCCAATATTTTATTTTCTATGGAACTGGCTAAGAAGTTGAAAGAGTATGACATTGAAGGAGTAAACACCTACAGTCTTCATCCAGGTGTGATAAAAACTGAATTAGGTCGTCACCTAAATGCTACCCTGTTCAGAGGTGCAAGATCTCTGATTGGCTTCTTTTTGTCTCCATTTATGAAGTCCCCACAATTAGGAGCACAAACTACAATATACTGTGCGATTGATGAAAAATGTGCAAACGAAACTGGACTATATTATAGTGACTGCGCTGTAACTAATCCTGCTAAAGTTATAAACGAAGAGAATGCACAAAAGCTGTGGGAGATTTCATGTGAGTTAGTAGGCCTCGGAGACTACAACCCGTTTACTGCCGAAGACCTCACAAATCTCAAAAATATATCGTAG

Protein

MPLFSGRCLSTVKLVGKTALITGCNTGIGKETALDFYKRGARVIMACRSLERAEEAKADIEKSCNNINETGHLVIAKCDLTSLKSVREFAQNILDTEPQINILVNNAGVMMCPKGETEDGFEIQFATNHLAHFLLTLLLLPRIRNSKPARVVTVSSRAHIRYGINFDDLNYKNRPYVPAEAYSQSKIANILFSMELAKKLKEYDIEGVNTYSLHPGVIKTELGRHLNATLFRGARSLIGFFLSPFMKSPQLGAQTTIYCAIDEKCANETGLYYSDCAVTNPAKVINEENAQKLWEISCELVGLGDYNPFTAEDLTNLKNIS

Similarity

Belongs to the short-chain dehydrogenases/reductases (SDR) family.

Uniprot

A0A2A4ITW6   A0A437AX65   A0A2H1WH72   A0A194R7Z6   A0A194PKI1   S4NY00   + More
A0A212F8A4   A0A212F8B8   A0A1B6EAX4   D6W7S0   K7J0E8   A0A1B6KSJ8   A0A1B6EKV3   A0A2S2Q592   A0A232EYD2   A0A1Y1LK58   A0A2S2R6R4   A0A1Y1MXQ9   A0A067QZN5   J3JXR8   A0A067R7Z1   A0A2S2NBC2   J9JRH1   A0A2H8TH63   A0A1B6J1P9   A0A2J7PC98   C4WVV5   E0VWS3   E2AS81   C4WWA5   A0A1B6DDS3   U4TTW8   A0A2J7PCB7   J9JWP9   A0A1S3D1P6   A0A3Q0IS06   A0A1S3D0B4   A0A1B6HEC2   E2AS80   A0A1B6HVA5   E9IUK5   A0A2J7QJH6   A0A1B6EJL3   A0A1B6GXS5   A0A1B6G533   A0A0A9XCV2   A0A3P9IAR0   A0A3Q1GTQ2   A0A067QZM7   A0A3B3CX44   A0A3P9K5N4   H2LVY0   J9JSH7   A0A437DAI9   G3PVU7   A0A1B6CK19   A0A3Q1FR38   A0A2A4IS58   A0A3Q1GTP1   A0A1A8V2V5   E9IEV6   A0A3P8VWS7   A0A3P8VWS4   A0A1A8I8V9   A0A3Q1FR10   A0A1A8AEJ3   A0A1A8PT10   A0A1A8FQH6   A0A3Q1CWX9   A0A2J7QJJ5   A0A3Q1AQG3   A0A3Q1BPQ0   A0A3Q1EP65   A0A3Q3B3C5   A0A3Q1G8M4   A0A3P8RPP6   A0A3P8RMT8   W4XPK0   A0A3B4THU3   A0A2S2QMX4   A0A1A7YTY4   A0A3Q3KWW6   A0A146NMV4   A0A3B4WP00   A0A3B4ZYZ8   A0A067QT19   A0A3Q2NS51   A0A3Q2TZ83   A0A1W4ZR02   A0A3Q2WVA1   A0A3P9D6V4   A0A3Q3WK15   A0A3Q4HXI5   A0A3Q2WGP4   A0A3P8PS94   A0A3P9BNR6   A0A2A4ITM5  

Pubmed

26354079    23622113    22118469    18362917    19820115    20075255    + More
28648823    28004739    24845553    22516182    20566863    20798317    23537049    21282665    25401762    17554307    29451363    24487278    25186727   

EMBL

NWSH01008300    PCG62612.1    RSAL01000300    RVE42757.1    ODYU01008651    SOQ52419.1    + More
KQ460615    KPJ13772.1    KQ459602    KPI93513.1    GAIX01011957    JAA80603.1    AGBW02009767    OWR49972.1    OWR49971.1    GEDC01002226    JAS35072.1    KQ971307    EFA11339.1    GEBQ01025582    JAT14395.1    GECZ01031210    JAS38559.1    GGMS01003693    MBY72896.1    NNAY01001637    OXU23355.1    GEZM01057458    GEZM01057457    JAV72325.1    GGMS01016445    MBY85648.1    GEZM01017808    JAV90444.1    KK853066    KDR11852.1    BT128039    AEE63000.1    KK852818    KDR15656.1    GGMR01001861    MBY14480.1    ABLF02021413    GFXV01001565    MBW13370.1    GECU01014602    JAS93104.1    NEVH01027063    PNF13961.1    AK341695    BAH72025.1    DS235824    EEB17829.1    GL442229    EFN63711.1    ABLF02021412    AK341946    BAH72175.1    GEDC01013455    JAS23843.1    KB631647    ERL84999.1    PNF13983.1    GECU01034666    GECU01029309    JAS73040.1    JAS78397.1    EFN63710.1    GECU01029087    JAS78619.1    GL765979    EFZ15759.1    NEVH01013555    PNF28745.1    GECZ01031652    JAS38117.1    GECZ01002549    JAS67220.1    GECZ01012225    JAS57544.1    GBHO01025776    GBHO01025775    GBRD01005778    JAG17828.1    JAG17829.1    JAG60043.1    KK853067    KDR11839.1    ABLF02036863    CM012442    RVE71877.1    GEDC01023454    JAS13844.1    PCG62615.1    HAEJ01014213    SBS54670.1    GL762722    EFZ20898.1    HAED01007709    SBQ93921.1    HADY01015032    SBP53517.1    HAEI01002890    HAEH01008320    SBR82291.1    SBR84147.1    HAEB01015103    HAEC01004534    SBQ61630.1    PNF28748.1    AAGJ04035927    AAGJ04035928    AAGJ04035929    GGMS01009830    MBY79033.1    HADW01007856    HADX01011421    SBP33653.1    GCES01153264    JAQ33058.1    KK852974    KDR13065.1    PCG62614.1   

Proteomes

UP000218220    UP000283053    UP000053240    UP000053268    UP000007151    UP000007266    + More
UP000002358    UP000215335    UP000027135    UP000007819    UP000235965    UP000009046    UP000000311    UP000030742    UP000079169    UP000265200    UP000257200    UP000261560    UP000265180    UP000001038    UP000007635    UP000265120    UP000257160    UP000264800    UP000265080    UP000007110    UP000261420    UP000261640    UP000261360    UP000261400    UP000265000    UP000192224    UP000264840    UP000265160    UP000261620    UP000261580    UP000265100   

Pfam

PF00106   adh_short        + More
PF10780   MRP_L53

Interpro

IPR002347   SDR_fam        + More
IPR036291   NAD(P)-bd_dom_sf       
IPR019716   Ribosomal_L53_mit       

SUPFAM

SSF51735   SSF51735       

ProteinModelPortal

A0A2A4ITW6   A0A437AX65   A0A2H1WH72   A0A194R7Z6   A0A194PKI1   S4NY00   + More
A0A212F8A4   A0A212F8B8   A0A1B6EAX4   D6W7S0   K7J0E8   A0A1B6KSJ8   A0A1B6EKV3   A0A2S2Q592   A0A232EYD2   A0A1Y1LK58   A0A2S2R6R4   A0A1Y1MXQ9   A0A067QZN5   J3JXR8   A0A067R7Z1   A0A2S2NBC2   J9JRH1   A0A2H8TH63   A0A1B6J1P9   A0A2J7PC98   C4WVV5   E0VWS3   E2AS81   C4WWA5   A0A1B6DDS3   U4TTW8   A0A2J7PCB7   J9JWP9   A0A1S3D1P6   A0A3Q0IS06   A0A1S3D0B4   A0A1B6HEC2   E2AS80   A0A1B6HVA5   E9IUK5   A0A2J7QJH6   A0A1B6EJL3   A0A1B6GXS5   A0A1B6G533   A0A0A9XCV2   A0A3P9IAR0   A0A3Q1GTQ2   A0A067QZM7   A0A3B3CX44   A0A3P9K5N4   H2LVY0   J9JSH7   A0A437DAI9   G3PVU7   A0A1B6CK19   A0A3Q1FR38   A0A2A4IS58   A0A3Q1GTP1   A0A1A8V2V5   E9IEV6   A0A3P8VWS7   A0A3P8VWS4   A0A1A8I8V9   A0A3Q1FR10   A0A1A8AEJ3   A0A1A8PT10   A0A1A8FQH6   A0A3Q1CWX9   A0A2J7QJJ5   A0A3Q1AQG3   A0A3Q1BPQ0   A0A3Q1EP65   A0A3Q3B3C5   A0A3Q1G8M4   A0A3P8RPP6   A0A3P8RMT8   W4XPK0   A0A3B4THU3   A0A2S2QMX4   A0A1A7YTY4   A0A3Q3KWW6   A0A146NMV4   A0A3B4WP00   A0A3B4ZYZ8   A0A067QT19   A0A3Q2NS51   A0A3Q2TZ83   A0A1W4ZR02   A0A3Q2WVA1   A0A3P9D6V4   A0A3Q3WK15   A0A3Q4HXI5   A0A3Q2WGP4   A0A3P8PS94   A0A3P9BNR6   A0A2A4ITM5  

PDB

3RD5     E-value=1.83491e-36,     Score=381

KEGG

101740262    no KO assigned | (RefSeq) retinol dehydrogenase 12

GO

GO:0016630   GO:0016021  

Length:

321

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.0511

Exp number, first 60 AAs:

0.00684

Total prob of N-in:

0.00392

outside

1  -  321

 

 

Pi

254.708738

Theta

178.582026

Tajima's D

1.397959

CLR

21.86086

CSRT

0.761161941902905

Interpretation

Uncertain