Gene

KWMTBOMO09174  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA003365

Annotation

PREDICTED:_integrator_complex_subunit_4_[Amyelois_transitella]

Location

Bomo_Chr15(-):12626732-12637715      View in EpiBrowser

Full name

Integrator complex subunit 4      

Location in the cell

Cytoplasmic   Reliability : 1.43 Golgi   Reliability : 1.324 Nuclear   Reliability : 1.005

CDS

ATGGCTGCAGTTTTAAAGAAGAGAGCCCTGGCAGAATACAATAAATCATTTCAGGATGCTCCACCATCGAAGAAGCTGCATTTGGCAAAGAAGCCGTTAATAGGTAGTTCTGCTGCTGCCTTTGTGGGTCTTCTAGAGAAATGCAAGTCCAGCGATGAAGCGTTGCAGTTTTTACTCAGAATATCCGACTGTCTTCAGTTCCAAGAGTCCGACGTAGAGGAAGCAATAAAGAAGTTGTCAAAACATTTTCAGTCGGAAGAAGAGTCTGTAGTCAGAGTAAAAATACTATGGCTTTTTTGTGACATAGGCTTGGAGGTTCCCTGTGCAAACTTGAATAACTTGATAGATGAAACCATACATTTAATAAAAAACGAAACGTCACACAAGGTTATCGGTCAAGGAATAGCAACACTGACAAAACTTGCCAAGAAATTGAGTGACGATAAAATTTTAATGATGAGGCTAGTTGGTGTTGCTAAAGACAATTTGAAAGATACTAGCCATCAGGTGAAATGTAGGTGTCTACAGCTCATCAGTGAGTTGTACCCTATACATCCGGACTCTGATAGAACATCTGAGATGACAGCAGAGGCTGAAGCTATTGTAAAACTTCTTGGAGATTATTCTAATTCTGAGGATGCCAGAGTGCGTTGTGAAGCATTTCAAGCACTGTTAACACTTCATCAAAGAGGACAGATCTTAGGATCTAATTTGTACGAACATGTTTGTGTTGCTCTGTCCGATGACTATGAAATAGTAAGAGAAGTTGCCCTAAAGTTGATTTGGGTACTTGGAAATAAATACCCAGAAAATGTAATAACGTTACAAGATGACGAGACCACGATACGAATGGTCGATGACGCTTTTGTTCGCATATGTTCGGCCGTGAACGATCTATGCATGCAAGTGCGAGCGCTCGCCTGCACGCTGCTCGGCACCACGCGCGCCGTTTCCGATCGCTTCCTGTTGCAGACCCTCGATAAACAACTAATGAGTAACATGAAGAAAAAGCGCACAGCACACGAGCGCGGCGCGGAGCTGGTCCGCAGCGGCGCGTGGGCGAGCGGGCGGCGCTGGGCGGACGACGCGCCCGGCGCGCTGGTGCCGTCCGCCGCCGTGCAGCTGCTGCCGGGCGGGGCGGCCGGCGCCTTTGTGCACGGACTCGAGGACGAACTCATGGAGGTGCGCACGGCAGCCGTCGAAGCATTGTGTCAACTCTCACTAGAAAACCCGGTGTTCGCGACCACCTCCCTCGACTTTTTGGTGGACATGTTCAATGACGAGATCGAGGAAGTGCGGCTGCGAGCCATCGACGCCCTCACGAGGATCTCGCATCATATCGTACTTAGAGAAGACCTACTGGAGACCATACTAGGAGCCTTGGAGGATTATTCAATGGACGTCAGGGAAGGTCTACACAGACTGCTGGGCTCGTGTACAGTCGCGTCCAAAACATGCCTGGAGATGTGCATTGATAAAATTCTGGAGAATCTCAAAAGATATCCACAGGATAAGCGTTCGACATTCCGTTGCGTGCAGCGGCTGGGCAGCTCGCACGCGACCCTGGTGCTGCCGCTGACCACGAGGCTGCTGGCCGTGCACCCTTTCTTCGACATGCCTGAGCCAGATGTTGAGGATCCAGCTTATATGTGCGTTTTGATCCTGGTGTTGAACGCGGCGCAGCACTGCACCACCATGCTGCCGCTGTTCGAGGAGCACACCATCAAGCATTACACGTATCTGCGGGACACCATGCCTCATCTCGTGCCGCATCTGCCCATCGGCGAACAGCAATCAAGCGCGGAGAAGATAGAGGCTGCGATGGACGACAGCGCCGTGAGACGGTTCTTCGACTGCGTGCTGCAGCACATCGACAACGGGACCCTCTCCACCGCCGTGAGGCTGAACATGCTGCGCTCGGCCGAGGAACAACTTAACAAGTTGTCGGAGATGGAGCCGGCGGTGTGCGGCGCGGCGCAGCGGACGGCACTGTTCGCGCGCTGCGTGCGGGCGCTGCATGACGCGCTGCAGTGCGCCGCGCCGCCGCAGCACGCGCTGCGCTCCCTGCACGCAGACTGTCTCCGGTCGGTAGCCTCCATCATTACATAA

Protein

MAAVLKKRALAEYNKSFQDAPPSKKLHLAKKPLIGSSAAAFVGLLEKCKSSDEALQFLLRISDCLQFQESDVEEAIKKLSKHFQSEEESVVRVKILWLFCDIGLEVPCANLNNLIDETIHLIKNETSHKVIGQGIATLTKLAKKLSDDKILMMRLVGVAKDNLKDTSHQVKCRCLQLISELYPIHPDSDRTSEMTAEAEAIVKLLGDYSNSEDARVRCEAFQALLTLHQRGQILGSNLYEHVCVALSDDYEIVREVALKLIWVLGNKYPENVITLQDDETTIRMVDDAFVRICSAVNDLCMQVRALACTLLGTTRAVSDRFLLQTLDKQLMSNMKKKRTAHERGAELVRSGAWASGRRWADDAPGALVPSAAVQLLPGGAAGAFVHGLEDELMEVRTAAVEALCQLSLENPVFATTSLDFLVDMFNDEIEEVRLRAIDALTRISHHIVLREDLLETILGALEDYSMDVREGLHRLLGSCTVASKTCLEMCIDKILENLKRYPQDKRSTFRCVQRLGSSHATLVLPLTTRLLAVHPFFDMPEPDVEDPAYMCVLILVLNAAQHCTTMLPLFEEHTIKHYTYLRDTMPHLVPHLPIGEQQSSAEKIEAAMDDSAVRRFFDCVLQHIDNGTLSTAVRLNMLRSAEEQLNKLSEMEPAVCGAAQRTALFARCVRALHDALQCAAPPQHALRSLHADCLRSVASIIT

Description

Component of the Integrator complex, a complex involved in the small nuclear RNAs (snRNA) U1 and U2 transcription and in their 3'-box-dependent processing.

Subunit

Belongs to the multiprotein complex Integrator.

Similarity

Belongs to the Integrator subunit 4 family.

Keywords

Nucleus   Repeat  

Feature

chain  Integrator complex subunit 4

Uniprot

A0A2H1WH17   A0A3S2NAW5   A0A194R938   A0A194PJB0   H9J1H8   A0A2A4JG33   + More
A0A2J7PTS3   A0A1B6L0V8   A0A1B6E309   A0A1Y1KGH3   D6WNP8   A0A1B6FTP8   A0A069DWU3   A0A023F1P2   A0A0V0GA73   T1HLK5   A0A224XIX8   A0A0A9XLV2   E0VWN5   N6T0P4   U4U0A7   A0A2R7WQR2   A0A182GIB1   A0A182JG55   Q17LI2   A0A182VHR8   A0A182M153   A0A1Q3F7B9   A0A182PRP9   A0A182X9J0   A0A182L8R1   A0A182UJ60   A0A182HKH3   A0A182NQM0   A0A182QT24   A0A182K522   A0A182VVV1   A0A084VXS1   A0A1B0CCD7   A0A182RVR1   A0A182YBF8   A0A1B0D7Z6   A0A224YTP1   A0A131Z4A6   L7M7B4   B0X7L2   Q7PX93   A0A2M4AHN6   A0A182FRM5   W5J837   A0A2R5LJB7   A0A336L9B2   A0A336LYV8   A0A147BQL0   A0A023GLA3   A0A1E1XBR9   A0A0P6B3A9   A0A0P5ZH62   A0A0P6EJX1   A0A0P4Y679   A0A0N8CNJ6   A0A0P5W2Y5   A0A293LIB9   A0A0N8D876   A0A0P5W899   A0A0P4XS64   A0A0N8CKH6   A0A131XES2   A0A1E1XM30   A0A0P5U6C4   E9HE00   A0A0A1WXA9   V5HG76   V3ZV05   A0A034V2J9   A0A0K8U138   C3Z8B9   A0A0P5Z5T2   W8BMN1   A0A1J1IDZ5   W5MHD2   A0A151N5H4   A0A151N4X6   Q68F70   A0A1A9X5K4   A0A3Q0FVC5   A0A1U7SVQ9   F6UCW4   A0A3Q0FQW1   A0A0P6E5N1   A0A1B0A5E6   A0A2Y9RFT3   B3NVG4   A0A240SWV1   A0A452EWM9   W5P9W4   K7F963  

Pubmed

26354079    19121390    28004739    18362917    19820115    26334808    + More
25474469    25401762    26823975    20566863    23537049    26483478    17510324    20966253    24438588    25244985    28797301    26830274    25576852    12364791    14747013    17210077    20920257    23761445    29652888    28503490    28049606    29209593    21292972    25830018    25765539    23254933    25348373    18563158    24495485    22293439    20431018    17994087    20809919    17381049   

EMBL

ODYU01008620    SOQ52359.1    RSAL01000300    RVE42754.1    KQ460615    KPJ13770.1    + More
KQ459602    KPI93511.1    BABH01023717    BABH01023718    BABH01023719    NWSH01001620    PCG70668.1    NEVH01021221    PNF19738.1    GEBQ01022716    JAT17261.1    GEDC01005019    JAS32279.1    GEZM01088909    JAV57837.1    KQ971342    EFA03749.1    GECZ01016201    JAS53568.1    GBGD01000361    JAC88528.1    GBBI01003798    JAC14914.1    GECL01001444    JAP04680.1    ACPB03014046    GFTR01007884    JAW08542.1    GBHO01021907    GDHC01006813    JAG21697.1    JAQ11816.1    DS235823    EEB17791.1    APGK01049450    APGK01049451    APGK01049452    APGK01049453    APGK01049454    APGK01049455    KB741154    ENN73654.1    KB630450    KB631015    KB631016    KB631106    ERL83607.1    ERL84006.1    ERL84007.1    ERL84111.1    KK855304    PTY21912.1    JXUM01065564    KQ562354    KXJ76091.1    CH477215    EAT47554.1    AXCM01000928    GFDL01011593    JAV23452.1    APCN01000830    AXCN02001514    ATLV01018205    KE525224    KFB42765.1    AJWK01006638    AJVK01034900    GFPF01009149    MAA20295.1    GEDV01002962    JAP85595.1    GACK01005277    JAA59757.1    DS232454    EDS42024.1    AAAB01008987    EAA01205.5    GGFK01006969    MBW40290.1    ADMH02002105    ETN59025.1    GGLE01005389    MBY09515.1    UFQS01002143    UFQT01002143    SSX13317.1    SSX32753.1    UFQT01000194    SSX21437.1    GEGO01002364    JAR93040.1    GBBM01000726    JAC34692.1    GFAC01002539    JAT96649.1    GDIP01021913    JAM81802.1    GDIP01044587    JAM59128.1    GDIQ01061693    LRGB01002451    JAN33044.1    KZS07644.1    GDIP01235762    JAI87639.1    GDIP01114279    JAL89435.1    GDIP01105828    JAL97886.1    GFWV01002869    MAA27599.1    GDIP01059239    JAM44476.1    GDIP01103085    JAM00630.1    GDIP01237366    JAI86035.1    GDIP01122839    JAL80875.1    GEFH01003739    JAP64842.1    GFAA01003383    JAU00052.1    GDIP01121235    JAL82479.1    GL732626    EFX70011.1    GBXI01010805    JAD03487.1    GANP01001823    JAB82645.1    KB203083    ESO86380.1    GAKP01022250    GAKP01022248    JAC36704.1    GDHF01032264    JAI20050.1    GG666593    EEN51243.1    GDIP01061229    JAM42486.1    GAMC01006528    JAC00028.1    CVRI01000047    CRK98495.1    AHAT01003066    AKHW03004037    KYO31849.1    KYO31848.1    BC079973    AAMC01059354    AAMC01059355    GDIP01170020    GDIQ01082079    JAJ53382.1    JAN12658.1    CH954180    EDV46356.1    CCAG010000014    CCAG010000015    LWLT01000026    AMGL01060853    AMGL01060854    AMGL01060855    AMGL01060856    AMGL01060857    AMGL01060858    AMGL01060859    AMGL01060860    AGCU01145919    AGCU01145920    AGCU01145921   

Proteomes

UP000283053    UP000053240    UP000053268    UP000005204    UP000218220    UP000235965    + More
UP000007266    UP000015103    UP000009046    UP000019118    UP000030742    UP000069940    UP000249989    UP000075880    UP000008820    UP000075903    UP000075883    UP000075885    UP000076407    UP000075882    UP000075902    UP000075840    UP000075884    UP000075886    UP000075881    UP000075920    UP000030765    UP000092461    UP000075900    UP000076408    UP000092462    UP000002320    UP000007062    UP000069272    UP000000673    UP000076858    UP000000305    UP000030746    UP000001554    UP000183832    UP000018468    UP000050525    UP000091820    UP000189705    UP000008143    UP000092445    UP000248480    UP000008711    UP000092444    UP000291000    UP000002356    UP000007267   

PRIDE

H9J1H8   

Pfam

PF01602   Adaptin_N        + More
PF02985   HEAT
PF12717   Cnd1
PF12765   Cohesin_HEAT

Interpro

IPR016024   ARM-type_fold        + More
IPR011989   ARM-like       
IPR002553   Clathrin/coatomer_adapt-like_N       
IPR000357   HEAT       
IPR032682   Cnd1_C       
IPR026003   Cohesin_HEAT       

SUPFAM

SSF48371   SSF48371       

Gene 3D

1.25.10.10    

ProteinModelPortal

A0A2H1WH17   A0A3S2NAW5   A0A194R938   A0A194PJB0   H9J1H8   A0A2A4JG33   + More
A0A2J7PTS3   A0A1B6L0V8   A0A1B6E309   A0A1Y1KGH3   D6WNP8   A0A1B6FTP8   A0A069DWU3   A0A023F1P2   A0A0V0GA73   T1HLK5   A0A224XIX8   A0A0A9XLV2   E0VWN5   N6T0P4   U4U0A7   A0A2R7WQR2   A0A182GIB1   A0A182JG55   Q17LI2   A0A182VHR8   A0A182M153   A0A1Q3F7B9   A0A182PRP9   A0A182X9J0   A0A182L8R1   A0A182UJ60   A0A182HKH3   A0A182NQM0   A0A182QT24   A0A182K522   A0A182VVV1   A0A084VXS1   A0A1B0CCD7   A0A182RVR1   A0A182YBF8   A0A1B0D7Z6   A0A224YTP1   A0A131Z4A6   L7M7B4   B0X7L2   Q7PX93   A0A2M4AHN6   A0A182FRM5   W5J837   A0A2R5LJB7   A0A336L9B2   A0A336LYV8   A0A147BQL0   A0A023GLA3   A0A1E1XBR9   A0A0P6B3A9   A0A0P5ZH62   A0A0P6EJX1   A0A0P4Y679   A0A0N8CNJ6   A0A0P5W2Y5   A0A293LIB9   A0A0N8D876   A0A0P5W899   A0A0P4XS64   A0A0N8CKH6   A0A131XES2   A0A1E1XM30   A0A0P5U6C4   E9HE00   A0A0A1WXA9   V5HG76   V3ZV05   A0A034V2J9   A0A0K8U138   C3Z8B9   A0A0P5Z5T2   W8BMN1   A0A1J1IDZ5   W5MHD2   A0A151N5H4   A0A151N4X6   Q68F70   A0A1A9X5K4   A0A3Q0FVC5   A0A1U7SVQ9   F6UCW4   A0A3Q0FQW1   A0A0P6E5N1   A0A1B0A5E6   A0A2Y9RFT3   B3NVG4   A0A240SWV1   A0A452EWM9   W5P9W4   K7F963  

KEGG

101739991    K13141 integrator complex subunit 4 | (RefSeq) integrator complex subunit 4

GO

GO:0016180   GO:0032039   GO:0006886   GO:0030117   GO:0016192   GO:0005634   GO:0034472   GO:0005488   GO:0004672   GO:0006468   GO:0005524   GO:0005739   GO:0016776   GO:0006811   GO:0016020   GO:0016876   GO:0043039  

Subcellular location

Nucleus  

Length:

702

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.06404

Exp number, first 60 AAs:

0.00152

Total prob of N-in:

0.00134

outside

1  -  702

 

 

Pi

214.24123

Theta

183.182724

Tajima's D

0.63782

CLR

0.347667

CSRT

0.551322433878306

Interpretation

Uncertain