Gene

KWMTBOMO09171  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA003367

Annotation

stromal_cell-derived_factor_2_precursor_[Bombyx_mori]

Location

Bomo_Chr15(-):12609741-12611465      View in EpiBrowser

Location in the cell

Extracellular   Reliability : 3.11

CDS

ATGGAAAATACAAAAATCCTTTCAATTGCGACTTTAGTCACTGTGGTGTTTCTCATTTCTATTATAAGTGAAAAAACGGAAGCTGCGAAGAATGAATTTGTGACGTGTGGATCAATATTAAAACTCATCAACACAGACTTGAAGTTAAGACTTCATTCGCATGATGTAAAGTATGGGTCTGGATCAGGACAGCAGTCTGTGACGGCGGTTGAGGTCTCTGATGATAACAATAGTCACTGGCTGGTTCGCCCTATGACAGGAGAAACCTGCAAGCGTGGTGCTCCGATAAAATGTAACACCAACATTAGACTTCAGCATGTAGCTACAAAGAAGAACTTGCATTCACATTTTTTTACCTCACCCCTCTCTGGCAATCAAGAGGTATCATGTTATGGAGACGATGAGGGTGAAGGGGACAGTGGAGACAATTGGACTGTGGTCTGCAACAATGACTACTGGAGGAGAGATACACCAGTAAAATTTAGACATGTTGATACTGGATCGTATCTTGCAGGCTCCGGGCGAACATTTGGTCGTCCCATCAATGGTCAAGGCGAGATTGTCGGAGTGAGTTCACAATATGGTGCTTACACTGACTGGCAAGCAAGTGAAGGTCTCTTTGTTCATCCTGGAGAACTATTACCACATCAGCATGCTGTACATACAGAGTTATAA

Protein

MENTKILSIATLVTVVFLISIISEKTEAAKNEFVTCGSILKLINTDLKLRLHSHDVKYGSGSGQQSVTAVEVSDDNNSHWLVRPMTGETCKRGAPIKCNTNIRLQHVATKKNLHSHFFTSPLSGNQEVSCYGDDEGEGDSGDNWTVVCNNDYWRRDTPVKFRHVDTGSYLAGSGRTFGRPINGQGEIVGVSSQYGAYTDWQASEGLFVHPGELLPHQHAVHTEL

Similarity

Belongs to the mitochondrial carrier (TC 2.A.29) family.

Uniprot

Q2F5L6   A0A194PL98   A0A194R7G3   I4DKU9   A0A2A4JFC4   A0A2H1VUB8   + More
F1C4B9   A0A1E1WVI1   A0A437AX71   A0A212F763   A0A0L7L1D3   S4PDU7   A0A1L8DVW8   A0A1Q3F9F0   B0XAX9   Q1HQT2   A0A1B0CKB7   A0A182G6G4   A0A023EJX9   D7EK01   A0A1J1IKE7   A0A023EJZ0   A0A182QCJ1   A0A084W306   A0A1Y1MXS6   Q17HC4   A0A1B0D2S3   A0A182ILY5   A0A182NLI9   A0A182VRS6   A0A1W4XKK7   A0A182LA67   Q7PY52   A0A182HLR6   A0A182VG04   A0A1L8EH29   W5JM99   A0A182WSW2   A0A2M4AAG7   A0A182XV01   A0A182UH10   A0A2M4C015   A0A2M4BYW4   A0A1I8NPT5   A0A182RPC8   A0A2M4BZ07   N6UH43   A0A182FNK5   T1DRB3   A0A2M3Z7M0   A0A1A9VG41   A0A1B0A1N2   D3TKL8   A0A1A9Y8D8   K7J8I9   A0A1B6J7F6   A0A182T8L8   A0A232FCB1   A0A182K8P0   A0A182MNK8   A0A182P2M3   A0A1B6FVD8   A0A1A9WX57   A0A023EJY1   A0A195E4T8   B3M181   A0A151X1N3   A0A336KR54   A0A034WLT9   A0A158NFK1   A0A0A1WMJ0   A0A0K8WHE2   B4QWA5   A0A3L8D480   A0A3B0JW14   B4JSN6   A0A026VVJ3   A0A1B0BMS4   B4M4W7   A0A195EUA4   A0A336MWV8   B3P2B7   A0A0M4ENN0   B4KC08   W8C9F1   A0A1I8MMV1   A0A0L0CDT9   A0A067QWG5   Q9VNA3   U5EJF4   B4I3Y7   A0A195CLG6   A0A1W4UWL4   Q296B4   B4GFD8   A0A0N0BIY4   A0A2A3ECT2   V9IBI0   C4WRN8   F4W484  

Pubmed

19121390    26354079    22651552    22118469    26227816    23622113    + More
17204158    26483478    24945155    18362917    19820115    24438588    28004739    17510324    20966253    12364791    14747013    17210077    20920257    23761445    25244985    23537049    20353571    20075255    28648823    17994087    25348373    21347285    25830018    30249741    24508170    24495485    25315136    26108605    24845553    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    15632085    21719571   

EMBL

BABH01023713    DQ311407    ABD36351.1    KQ459602    KPI93509.1    KQ460615    + More
KPJ13768.1    AK401917    BAM18539.1    NWSH01001620    PCG70671.1    ODYU01004208    SOQ43834.1    HQ199329    ADX30520.1    GDQN01000015    JAT91039.1    RSAL01000300    RVE42752.1    AGBW02009919    OWR49573.1    JTDY01003700    KOB69121.1    GAIX01003496    JAA89064.1    GFDF01003512    JAV10572.1    GFDL01010902    JAV24143.1    DS232602    EDS43949.1    DQ440362    ABF18395.1    AJWK01015969    JXUM01045030    JXUM01045031    KQ561423    KXJ78631.1    GAPW01004187    JAC09411.1    DS497724    EFA12948.1    CVRI01000051    CRK99550.1    GAPW01004166    JAC09432.1    AXCN02000143    ATLV01019767    KE525279    KFB44600.1    GEZM01021945    JAV88806.1    CH477250    EAT46082.1    AJVK01023107    AAAB01008987    EAA00948.3    APCN01000911    GFDG01000821    JAV17978.1    ADMH02000703    ETN65276.1    GGFK01004434    MBW37755.1    GGFJ01009187    MBW58328.1    GGFJ01009144    MBW58285.1    GGFJ01009165    MBW58306.1    APGK01026291    KB740624    ENN79956.1    GAMD01000700    JAB00891.1    GGFM01003750    MBW24501.1    CCAG010009176    EZ421950    EZ424301    ADD18246.1    ADD20577.1    GECU01012614    JAS95092.1    NNAY01000478    OXU28103.1    AXCM01005967    GECZ01015650    JAS54119.1    GAPW01004186    JAC09412.1    KQ979609    KYN20178.1    CH902617    EDV44351.1    KQ982585    KYQ54309.1    UFQS01000733    UFQT01000733    SSX06471.1    SSX26820.1    GAKP01002406    JAC56546.1    ADTU01001535    GBXI01014431    JAC99860.1    GDHF01001738    JAI50576.1    CM000364    EDX11704.1    QOIP01000013    RLU15265.1    OUUW01000008    SPP84632.1    CH916373    EDV94776.1    KK107796    EZA47665.1    JXJN01017038    CH940652    EDW59678.1    KQ981979    KYN31459.1    UFQT01002491    SSX33569.1    CH954181    EDV47867.1    CP012526    ALC47252.1    CH933806    EDW15860.1    GAMC01002209    JAC04347.1    JRES01000531    KNC30406.1    KK853286    KDR08963.1    AE014297    AY118807    AAF52043.1    AAM50667.1    GANO01002254    JAB57617.1    CH480821    EDW54930.1    KQ977642    KYN00929.1    CM000070    EAL28544.1    CH479182    EDW34323.1    KQ435726    KOX78222.1    KZ288282    PBC29583.1    JR039030    AEY58493.1    ABLF02038286    AK339848    BAH70558.1    GL887491    EGI71080.1   

Proteomes

UP000005204    UP000053268    UP000053240    UP000218220    UP000283053    UP000007151    + More
UP000037510    UP000002320    UP000092461    UP000069940    UP000249989    UP000007266    UP000183832    UP000075886    UP000030765    UP000008820    UP000092462    UP000075880    UP000075884    UP000075920    UP000192223    UP000075882    UP000007062    UP000075840    UP000075903    UP000000673    UP000076407    UP000076408    UP000075902    UP000095300    UP000075900    UP000019118    UP000069272    UP000078200    UP000092445    UP000092444    UP000092443    UP000002358    UP000075901    UP000215335    UP000075881    UP000075883    UP000075885    UP000091820    UP000078492    UP000007801    UP000075809    UP000005205    UP000000304    UP000279307    UP000268350    UP000001070    UP000053097    UP000092460    UP000008792    UP000078541    UP000008711    UP000092553    UP000009192    UP000095301    UP000037069    UP000027135    UP000000803    UP000001292    UP000078542    UP000192221    UP000001819    UP000008744    UP000053105    UP000242457    UP000007819    UP000007755   

PRIDE

Q2F5L6    Q9VNA3   

Pfam

PF02815   MIR        + More
PF00153   Mito_carr
PF15012   DUF4519

Interpro

IPR016093   MIR_motif        + More
IPR036300   MIR_dom_sf       
IPR023395   Mt_carrier_dom_sf       
IPR018108   Mitochondrial_sb/sol_carrier       
IPR027960   DUF4519       

SUPFAM

SSF82109   SSF82109        + More
SSF103506   SSF103506       

Gene 3D

1.50.40.10    

ProteinModelPortal

Q2F5L6   A0A194PL98   A0A194R7G3   I4DKU9   A0A2A4JFC4   A0A2H1VUB8   + More
F1C4B9   A0A1E1WVI1   A0A437AX71   A0A212F763   A0A0L7L1D3   S4PDU7   A0A1L8DVW8   A0A1Q3F9F0   B0XAX9   Q1HQT2   A0A1B0CKB7   A0A182G6G4   A0A023EJX9   D7EK01   A0A1J1IKE7   A0A023EJZ0   A0A182QCJ1   A0A084W306   A0A1Y1MXS6   Q17HC4   A0A1B0D2S3   A0A182ILY5   A0A182NLI9   A0A182VRS6   A0A1W4XKK7   A0A182LA67   Q7PY52   A0A182HLR6   A0A182VG04   A0A1L8EH29   W5JM99   A0A182WSW2   A0A2M4AAG7   A0A182XV01   A0A182UH10   A0A2M4C015   A0A2M4BYW4   A0A1I8NPT5   A0A182RPC8   A0A2M4BZ07   N6UH43   A0A182FNK5   T1DRB3   A0A2M3Z7M0   A0A1A9VG41   A0A1B0A1N2   D3TKL8   A0A1A9Y8D8   K7J8I9   A0A1B6J7F6   A0A182T8L8   A0A232FCB1   A0A182K8P0   A0A182MNK8   A0A182P2M3   A0A1B6FVD8   A0A1A9WX57   A0A023EJY1   A0A195E4T8   B3M181   A0A151X1N3   A0A336KR54   A0A034WLT9   A0A158NFK1   A0A0A1WMJ0   A0A0K8WHE2   B4QWA5   A0A3L8D480   A0A3B0JW14   B4JSN6   A0A026VVJ3   A0A1B0BMS4   B4M4W7   A0A195EUA4   A0A336MWV8   B3P2B7   A0A0M4ENN0   B4KC08   W8C9F1   A0A1I8MMV1   A0A0L0CDT9   A0A067QWG5   Q9VNA3   U5EJF4   B4I3Y7   A0A195CLG6   A0A1W4UWL4   Q296B4   B4GFD8   A0A0N0BIY4   A0A2A3ECT2   V9IBI0   C4WRN8   F4W484  

PDB

1T9F     E-value=6.98539e-45,     Score=452

KEGG

692974    no KO assigned | (RefSeq) stromal cell-derived factor 2 precursor

GO

GO:0016020   GO:0016757   GO:0071712   GO:0004169   GO:0005789   GO:0035269   GO:0016021   GO:0012505   GO:0004672   GO:0006468   GO:0005524   GO:0005739   GO:0016776   GO:0006811   GO:0016876   GO:0043039  

SignalP

Position:   1 - 28,         Likelihood:  0.911355

 

 

Length:

224

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

11.95706

Exp number, first 60 AAs:

11.95683

Total prob of N-in:

0.43286

POSSIBLE N-term signal

sequence

outside

1  -  224

 

 

Pi

187.951377

Theta

167.866448

Tajima's D

0.500233

CLR

0.064188

CSRT

0.511174441277936

Interpretation

Uncertain