Gene

KWMTBOMO09162

Pre Gene Modal

BGIBMGA003372

Annotation

PREDICTED:_tigger_transposable_element-derived_protein_6-like_isoform_X3_[Pogonomyrmex_barbatus]

Location

Bomo_Chr15(-):12497882-12500275      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 3.045

CDS

ATGAGGACATATAAAAGAAAAACGGAGCGTGGCAAAATATCAAAAGATGTTTACGAACAAGCCGCGGTTATATTGGAGGAAGATGAGTCAAAAAAAATTCGTGGCATCGCAAAAGATTTCGGATTATGTCATATGTCGCTAACGAGATATATGAGGAAAAGTAAAGATGCAAAACAGAAGGGTATACCTATAGAATCACTCACAATAGGATACAAGAAGAATCGTCAAGTATTCAGTGGTGAACAGGAAGCAATTTTAGTGAGTTATTTGATTAAATGTAGCCAAATTTATTACGGCTTAACTCCAAAAGACGTCAGACAACTTGCATTTGATTGCGCACTAAAGCACAATATTGCGATACCAAAATCGTGGCTTGACAATAAAGAGGCAGGTGTAGATTGGCTGACAGCGTTTTTAAAACGCAACCCGTCTTTATCTATACGGTCGCCAGAAGCTACAAGCTTGAGCAGAGCCACATCATTCAATAAAACGAATGTTGACAATTTCTTTTCTAAGTTGACTGACGTGTTAGACAGATATAGATTTTCTGCATCACGTATATGGAATGTGGACGAGACAGGTGTCACCACGGTGCTGAAACCCAGAAAAATTTTAGCTGCAAAGGGTTCTAAACAAGTTGGTTCAATTACATCAGCCGAGAGAGGGACTCTTGTGACTCTCTGCGTCGCAGTAAATGCAGTGGGAAATTCGGTGCCTTGTATGTTCATCTTTCCACGAATTAAATATAGAGAATATTTTGTTCGCGATGGACCACCTGGTTCAATTGGTGCAGGCAACTCAAGTGGCTGGATGACAGGGCGAGAATTTAAAATTTTTATGAAACATTTTATAGATAATGTGAAACCATCTCCATCCGATCCTGTGCTCTTATTATTAGACAATCATACTTCGCATTTGGATATTGAAGTCATTGAAACAGCCAAAGACAATAATGTAGTGTTACTCTCCTTTCCACCACACTGCTCACATAAGCTCCAGCCCTTGGATGTGGGGGTTTATGGTCCATTAAAAAATTACTGTGCCAGTCAGCAAGATTCTTGGCTTAGAAACAATCCAGGGAAAACAATGTCTATTCATGACATTCCATCTATAGTGAATAAAGCTTTACCCTTAGCATTGAATCCAGCTAACATTATCAATGGATTTAAAAATACTGGCATCGCACCATTTAATAAAGATATATTCCAGGAAGATGACTTCTTATCGGCTTTTGTAACTGATAGACCAATAGACGACGAAGTGCCTAATGCAAACATTGAAAGTTGCCCTGTTACAACGCAGAATAAAGAGACAGAAACTCCAGTTTCACCTTCTTGCCATCGCCCCATAATAAGCCCTATAACAGAAGCCAATAGGTCAATTTATACCAGCCCAGTTGCGGGATGTTCTAAAGACATTGAAAATACTTTTTCTCCTGCAAATATTCGACCTTATCCAAAAGCAGCTGCCAGAAAAAGCAAATTAACTCGGAAAACTCGCAAATCCGCTATTTTAACTGATACACCGGAAAAAAATGCTTTGGCTTTGGAACAAGAGAAAAGGAACGATATTAAATCTAAAAAGGGAAAGTTAACTAAAAGATTAAAGTCAAAATCAAGTTCCGAGAAGACAGATAAACAAAATGTGAAGAAAATAAGAAAAACAATTAAGCAAATAAAACAGTTAGTAGTTAAGAAGAAGATATTACATGAAACTGATGAAGAAATCGTAGAAGATGAATATTTTTGTCTGATATGTTGTGACCCATTTGATCCCAAGAAAGCTGGTGAGGAATGGATAGAGTGTATTGTTTGCAAAAATTGGTCACATGTGAAATGTATCCGAGGAAATATTATACAATACGTTTGTTTAAATTGCGAAAGTGACCATTCAGATTACAGTGACTAA

Protein

MRTYKRKTERGKISKDVYEQAAVILEEDESKKIRGIAKDFGLCHMSLTRYMRKSKDAKQKGIPIESLTIGYKKNRQVFSGEQEAILVSYLIKCSQIYYGLTPKDVRQLAFDCALKHNIAIPKSWLDNKEAGVDWLTAFLKRNPSLSIRSPEATSLSRATSFNKTNVDNFFSKLTDVLDRYRFSASRIWNVDETGVTTVLKPRKILAAKGSKQVGSITSAERGTLVTLCVAVNAVGNSVPCMFIFPRIKYREYFVRDGPPGSIGAGNSSGWMTGREFKIFMKHFIDNVKPSPSDPVLLLLDNHTSHLDIEVIETAKDNNVVLLSFPPHCSHKLQPLDVGVYGPLKNYCASQQDSWLRNNPGKTMSIHDIPSIVNKALPLALNPANIINGFKNTGIAPFNKDIFQEDDFLSAFVTDRPIDDEVPNANIESCPVTTQNKETETPVSPSCHRPIISPITEANRSIYTSPVAGCSKDIENTFSPANIRPYPKAAARKSKLTRKTRKSAILTDTPEKNALALEQEKRNDIKSKKGKLTKRLKSKSSSEKTDKQNVKKIRKTIKQIKQLVVKKKILHETDEEIVEDEYFCLICCDPFDPKKAGEEWIECIVCKNWSHVKCIRGNIIQYVCLNCESDHSDYSD

Uniprot

A0A1W4WAP5   A0A2A4JQE1   A0A151IRD9   A0A2A4J1E0   A0A1W4XA29   A0A2S2NP39   + More
A0A2A4K4E0   A0A2H1VA32   A0A151IB56   A0A3N0Y1T9   A0A0J7KEH1   A0A2W1B5C9   X1WJ54   A0A0P6I744   A0A0P5JU33   A0A1Y1N139   A0A1Y1MZ46   X1XKW0   X1XDD3   A0A2L2YKN8   J9K539   A0A2H1W686   A0A0P5M4C5   A0A3P8NPX0   A0A147BB25   A0A164L4P2   J9K2D5   A0A0P5JXG0   A0A0P6HDU5   X1WM14   A0A146KPT3   A0A3P8XDA2   L7MAV6   A0A1Y1L3N3   A0A1Y1MAV5   A0A151X7P4   A0A0P5Q3E2   E9H8A3   A0A2H1VRL1   J9KKA5   A0A1B6L3T1   A0A0P5BKE5  

Pubmed

28756777    28004739    26561354    29652888    26823975    25069045    + More
25576852    21292972   

EMBL

NWSH01000827    PCG73986.1    KQ981133    KYN09256.1    NWSH01003711    PCG65895.1    + More
GGMR01006341    MBY18960.1    NWSH01000193    PCG78522.1    ODYU01001473    SOQ37710.1    KQ978123    KYM96896.1    RJVU01053773    ROL23530.1    LBMM01008804    KMQ88629.1    KZ150321    PZC71419.1    ABLF02029656    GDIQ01010354    JAN84383.1    GDIQ01193792    JAK57933.1    GEZM01020578    JAV89247.1    GEZM01020579    JAV89246.1    ABLF02018523    ABLF02018527    ABLF02023249    ABLF02023256    IAAA01031058    LAA08688.1    ABLF02011603    ODYU01006608    SOQ48601.1    GDIQ01164503    JAK87222.1    GEGO01007436    JAR87968.1    LRGB01003206    KZS03791.1    ABLF02010860    ABLF02010863    GDIQ01193793    JAK57932.1    GDIQ01020929    JAN73808.1    ABLF02007358    ABLF02007359    ABLF02007364    ABLF02037183    GDHC01020924    JAP97704.1    GACK01003884    JAA61150.1    GEZM01066092    GEZM01066091    JAV68194.1    GEZM01039017    JAV81445.1    KQ982443    KYQ56383.1    GDIQ01126265    JAL25461.1    GL732603    EFX72035.1    ODYU01004023    SOQ43475.1    ABLF02006839    GEBQ01021595    JAT18382.1    GDIP01183765    JAJ39637.1   

Proteomes

UP000192223    UP000218220    UP000078492    UP000078542    UP000036403    UP000007819    + More
UP000265100    UP000076858    UP000265140    UP000075809    UP000000305   

Pfam

PF03184   DDE_1        + More
PF03221   HTH_Tnp_Tc5
PF05225   HTH_psq

Interpro

IPR004875   DDE_SF_endonuclease_dom        + More
IPR013083   Znf_RING/FYVE/PHD       
IPR011011   Znf_FYVE_PHD       
IPR006600   HTH_CenpB_DNA-bd_dom       
IPR001965   Znf_PHD       
IPR007889   HTH_Psq       
IPR002219   PE/DAG-bd       
IPR009057   Homeobox-like_sf       
IPR019787   Znf_PHD-finger       

SUPFAM

SSF57903   SSF57903        + More
SSF46689   SSF46689       

Gene 3D

3.30.40.10    

ProteinModelPortal

A0A1W4WAP5   A0A2A4JQE1   A0A151IRD9   A0A2A4J1E0   A0A1W4XA29   A0A2S2NP39   + More
A0A2A4K4E0   A0A2H1VA32   A0A151IB56   A0A3N0Y1T9   A0A0J7KEH1   A0A2W1B5C9   X1WJ54   A0A0P6I744   A0A0P5JU33   A0A1Y1N139   A0A1Y1MZ46   X1XKW0   X1XDD3   A0A2L2YKN8   J9K539   A0A2H1W686   A0A0P5M4C5   A0A3P8NPX0   A0A147BB25   A0A164L4P2   J9K2D5   A0A0P5JXG0   A0A0P6HDU5   X1WM14   A0A146KPT3   A0A3P8XDA2   L7MAV6   A0A1Y1L3N3   A0A1Y1MAV5   A0A151X7P4   A0A0P5Q3E2   E9H8A3   A0A2H1VRL1   J9KKA5   A0A1B6L3T1   A0A0P5BKE5  

KEGG

101739992    no KO assigned | (RefSeq) tigger transposable element-derived protein 6-like

GO

GO:0046872   GO:0003676   GO:0016021   GO:0003677   GO:0035556   GO:0005634   GO:0004523   GO:0000287   GO:0015074   GO:0005739   GO:0016776   GO:0006811   GO:0016020   GO:0016876   GO:0043039  

Subcellular location

Nucleus  

Length:

635

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

7.95834999999999

Exp number, first 60 AAs:

0.00035

Total prob of N-in:

0.36149

outside

1  -  635

 

 

Pi

151.115543

Theta

170.627656

Tajima's D

1.080577

CLR

0

CSRT

0.684815759212039

Interpretation

Uncertain