SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO09162
Pre Gene Modal
BGIBMGA003372
Annotation
PREDICTED:_tigger_transposable_element-derived_protein_6-like_isoform_X3_[Pogonomyrmex_barbatus]
Location in the cell
Nuclear   Reliability : 3.045
 

Sequence

CDS
ATGAGGACATATAAAAGAAAAACGGAGCGTGGCAAAATATCAAAAGATGTTTACGAACAAGCCGCGGTTATATTGGAGGAAGATGAGTCAAAAAAAATTCGTGGCATCGCAAAAGATTTCGGATTATGTCATATGTCGCTAACGAGATATATGAGGAAAAGTAAAGATGCAAAACAGAAGGGTATACCTATAGAATCACTCACAATAGGATACAAGAAGAATCGTCAAGTATTCAGTGGTGAACAGGAAGCAATTTTAGTGAGTTATTTGATTAAATGTAGCCAAATTTATTACGGCTTAACTCCAAAAGACGTCAGACAACTTGCATTTGATTGCGCACTAAAGCACAATATTGCGATACCAAAATCGTGGCTTGACAATAAAGAGGCAGGTGTAGATTGGCTGACAGCGTTTTTAAAACGCAACCCGTCTTTATCTATACGGTCGCCAGAAGCTACAAGCTTGAGCAGAGCCACATCATTCAATAAAACGAATGTTGACAATTTCTTTTCTAAGTTGACTGACGTGTTAGACAGATATAGATTTTCTGCATCACGTATATGGAATGTGGACGAGACAGGTGTCACCACGGTGCTGAAACCCAGAAAAATTTTAGCTGCAAAGGGTTCTAAACAAGTTGGTTCAATTACATCAGCCGAGAGAGGGACTCTTGTGACTCTCTGCGTCGCAGTAAATGCAGTGGGAAATTCGGTGCCTTGTATGTTCATCTTTCCACGAATTAAATATAGAGAATATTTTGTTCGCGATGGACCACCTGGTTCAATTGGTGCAGGCAACTCAAGTGGCTGGATGACAGGGCGAGAATTTAAAATTTTTATGAAACATTTTATAGATAATGTGAAACCATCTCCATCCGATCCTGTGCTCTTATTATTAGACAATCATACTTCGCATTTGGATATTGAAGTCATTGAAACAGCCAAAGACAATAATGTAGTGTTACTCTCCTTTCCACCACACTGCTCACATAAGCTCCAGCCCTTGGATGTGGGGGTTTATGGTCCATTAAAAAATTACTGTGCCAGTCAGCAAGATTCTTGGCTTAGAAACAATCCAGGGAAAACAATGTCTATTCATGACATTCCATCTATAGTGAATAAAGCTTTACCCTTAGCATTGAATCCAGCTAACATTATCAATGGATTTAAAAATACTGGCATCGCACCATTTAATAAAGATATATTCCAGGAAGATGACTTCTTATCGGCTTTTGTAACTGATAGACCAATAGACGACGAAGTGCCTAATGCAAACATTGAAAGTTGCCCTGTTACAACGCAGAATAAAGAGACAGAAACTCCAGTTTCACCTTCTTGCCATCGCCCCATAATAAGCCCTATAACAGAAGCCAATAGGTCAATTTATACCAGCCCAGTTGCGGGATGTTCTAAAGACATTGAAAATACTTTTTCTCCTGCAAATATTCGACCTTATCCAAAAGCAGCTGCCAGAAAAAGCAAATTAACTCGGAAAACTCGCAAATCCGCTATTTTAACTGATACACCGGAAAAAAATGCTTTGGCTTTGGAACAAGAGAAAAGGAACGATATTAAATCTAAAAAGGGAAAGTTAACTAAAAGATTAAAGTCAAAATCAAGTTCCGAGAAGACAGATAAACAAAATGTGAAGAAAATAAGAAAAACAATTAAGCAAATAAAACAGTTAGTAGTTAAGAAGAAGATATTACATGAAACTGATGAAGAAATCGTAGAAGATGAATATTTTTGTCTGATATGTTGTGACCCATTTGATCCCAAGAAAGCTGGTGAGGAATGGATAGAGTGTATTGTTTGCAAAAATTGGTCACATGTGAAATGTATCCGAGGAAATATTATACAATACGTTTGTTTAAATTGCGAAAGTGACCATTCAGATTACAGTGACTAA
Protein
MRTYKRKTERGKISKDVYEQAAVILEEDESKKIRGIAKDFGLCHMSLTRYMRKSKDAKQKGIPIESLTIGYKKNRQVFSGEQEAILVSYLIKCSQIYYGLTPKDVRQLAFDCALKHNIAIPKSWLDNKEAGVDWLTAFLKRNPSLSIRSPEATSLSRATSFNKTNVDNFFSKLTDVLDRYRFSASRIWNVDETGVTTVLKPRKILAAKGSKQVGSITSAERGTLVTLCVAVNAVGNSVPCMFIFPRIKYREYFVRDGPPGSIGAGNSSGWMTGREFKIFMKHFIDNVKPSPSDPVLLLLDNHTSHLDIEVIETAKDNNVVLLSFPPHCSHKLQPLDVGVYGPLKNYCASQQDSWLRNNPGKTMSIHDIPSIVNKALPLALNPANIINGFKNTGIAPFNKDIFQEDDFLSAFVTDRPIDDEVPNANIESCPVTTQNKETETPVSPSCHRPIISPITEANRSIYTSPVAGCSKDIENTFSPANIRPYPKAAARKSKLTRKTRKSAILTDTPEKNALALEQEKRNDIKSKKGKLTKRLKSKSSSEKTDKQNVKKIRKTIKQIKQLVVKKKILHETDEEIVEDEYFCLICCDPFDPKKAGEEWIECIVCKNWSHVKCIRGNIIQYVCLNCESDHSDYSD

Summary

Pfam
PF03184   DDE_1        + More
PF03221   HTH_Tnp_Tc5
PF05225   HTH_psq
Interpro
IPR004875   DDE_SF_endonuclease_dom        + More
IPR013083   Znf_RING/FYVE/PHD       
IPR011011   Znf_FYVE_PHD       
IPR006600   HTH_CenpB_DNA-bd_dom       
IPR001965   Znf_PHD       
IPR007889   HTH_Psq       
IPR002219   PE/DAG-bd       
IPR009057   Homeobox-like_sf       
IPR019787   Znf_PHD-finger       
SUPFAM
SSF57903   SSF57903        + More
SSF46689   SSF46689       
Gene 3D

Ontologies

Topology

Subcellular location
Nucleus  
Length:
635
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
7.95834999999999
Exp number, first 60 AAs:
0.00035
Total prob of N-in:
0.36149
outside
1  -  635
 
 

Population Genetic Test Statistics

Pi
151.115543
Theta
170.627656
Tajima's D
1.080577
CLR
0
CSRT
0.684815759212039
Interpretation
Uncertain
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