Silkworm Genome Informatics Database

Gene

KWMTBOMO09161

Pre Gene Modal

BGIBMGA003373

Annotation

hypothetical_protein_RR48_10943_[Papilio_machaon]

Location

Bomo_Chr15(-):12491826-12492875 View in EpiBrowser

Location in the cell

Cytoplasmic Reliability : 1.092 Mitochondrial Reliability : 1.416 Nuclear Reliability : 1.627

CDS

ATGGCGGCGACGGCTCGTCGCGAGATAGACACCGGCGAGGAGGATATCGCGGCTATAGCCAGGCAGATATCCGACCATGCCGAGGCTATCTATCAGACGTGGAAAGCGCGCGGCTTGGCGCCTTCTGAGATCCTCTCTTGCAGACCTACATCCGGCATCAAGCTGACCGACAACCTACGGACCAAACCCAAACCAGAACCTAAGCCAGACCTGAAGCAAAGACCAGAACTCAGACGGGATCATCGCCCGGATCCTACTCGTGAGAGGGCGAGGAGGGAACTGAGACAAGAGCAAAGATCCGAACCTGATGGCGAAATTATGGATATCACTTTGCCTCCAGATTTAGTGCCTGAACGCAATGGAACAGGAACGACTTTAGTTGGAGGTAGGCGCGCTGATGCCGCTGCCATGAGATTAGAAGTAGCGCGCGAGGAGGAAAGATTGTTGAGAGCTCTTCGTACAGGGGGAGTTGTTGCAGAACGTCCTGCAGAGAGACCAGACGTGGTTCCGCCGGTCTCTCTCGTTGATTACGCAAAGAGCCGCTATCAGGATAAACTGGAAACCGGTGCGAGGAAGCCGGCTGCAGGGGCTGGAGGAGAGAGACGTGCCTCGCTTGGTTCTCACGTGACCGAAGCTCGATCCAAGTTCGAAGCTCGCGCTCGCAGGGCCTCCAGCGCCGGCACCGGTGAGCCGGTCTCCGCTGCGGGCACGACGCCCGTGCGACCGTTCCTCACGAGAGGATCTGTTGCTGAACGCGTGCTCATGTTCGAGAAATGCCCCAGCGAGGCTACTCTAGAGCTCGCCAAGAGGAAATCTCCAGCAGCAACGACATGGCGGGGACCGCACGACGTCATCAATAGAGCACAGGTACGTTTGTGA

Protein

MAATARREIDTGEEDIAAIARQISDHAEAIYQTWKARGLAPSEILSCRPTSGIKLTDNLRTKPKPEPKPDLKQRPELRRDHRPDPTRERARRELRQEQRSEPDGEIMDITLPPDLVPERNGTGTTLVGGRRADAAAMRLEVAREEERLLRALRTGGVVAERPAERPDVVPPVSLVDYAKSRYQDKLETGARKPAAGAGGERRASLGSHVTEARSKFEARARRASSAGTGEPVSAAGTTPVRPFLTRGSVAERVLMFEKCPSEATLELAKRKSPAATTWRGPHDVINRAQVRL

Uniprot

H9J1I6 A0A194R8D1 A0A194PJJ9 A0A2A4JEK4 A0A2H1VXT8 A0A212F7K2 + More
A0A3S2LAQ1 A0A0L7L915

Pubmed

19121390 26354079 22118469 26227816

EMBL

BABH01023697 KQ460615 KPJ13759.1 KQ459602 KPI93502.1 NWSH01001819 + More
PCG70024.1 ODYU01005105 SOQ45650.1 AGBW02009863 OWR49712.1 RSAL01000063 RVE49499.1 JTDY01002224 KOB71860.1

Proteomes

UP000005204 UP000053240 UP000053268 UP000218220 UP000007151 UP000283053 + More
UP000037510

PRIDE

H9J1I6

Pfam

PF17958 EF-hand_13 + More
PF13499 EF-hand_7

Interpro

IPR041534   EF-hand_13        + More
IPR011992   EF-hand-dom_pair
IPR002048   EF_hand_dom
IPR018247   EF_Hand_1_Ca_BS

SUPFAM

SSF47473 SSF47473

ProteinModelPortal

H9J1I6 A0A194R8D1 A0A194PJJ9 A0A2A4JEK4 A0A2H1VXT8 A0A212F7K2 + More
A0A3S2LAQ1 A0A0L7L915

KEGG

101739716 K11583 serine/threonine-protein phosphatase 2A regulatory subunit B'' | (RefSeq) serine/threonine-pr

PATHWAY

03015 mRNA surveillance pathway - Bombyx mori (domestic silkworm)

GO

Length:

292

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00129

Exp number, first 60 AAs:

0

Total prob of N-in:

0.13165

outside

1 - 292

Pi

217.507918

Theta

198.562186

Tajima's D

0.300325

CLR

0.107224

CSRT

0.454127293635318

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics