Gene

KWMTBOMO09150  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA003377

Annotation

replication_factor_C4_[Bombyx_mori]

Location

Bomo_Chr15(+):12185508-12191141      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 1.581 Mitochondrial   Reliability : 1.01 Nuclear   Reliability : 1.418

CDS

ATGCAAGCATTTCTTAAGACTGGAAAGATATCTGCAGGAGACAAAGCGTCAACTTCTGGAGTTAAAACTACAAATAAGAAAAAACCTCCAGCTCCATGGGTCGAAAAATATAGACCGAAGACAATAGACGATATAGTGGACCAAGGAGAGGTTGTTCAAGTGCTAAGGGAATGTTTATCCGGTGGAGATCTACCGCATTTACTATTTTATGGACCGCCGGGTACCGGTAAAACGAGTGCCATACTTGCCGCTGCAAAGCAACTCTTCGGAGATATCAGTCGAGACCGCGTGTTGGAATTAAATGCATCCGATGAACGCGGTATACAAGTCGTTAGAGATAAAGTTAAAGCATTTGCCCAGCTTACAGTTAGCGGAAAAAGAGCTGATGGTCGACCATGTCCCTCATACAAACTGGTCATTCTGGATGAAGCAGACTCGATGACTACAGCAGCTCAAGCGGCACTTCGACGCACTATGGAACGCGAGACTCGTACTACACGGTTCTGTCTCATCTGCAACTATGTGTCAAGGATCATACCGCCAATCACGAGTCGCTGTTCAAAATTTCGCTTTAAGCCATTAGCTAGAGAGAATGTTATTAAACGGTTACGTGAGATATGTGAAGCCGAAAATGTGGATGTCGGTGAAGGTGAGATTCTAAACCAAGCAGTGGATACTTGTGAAGGTGATCTGCGCAGAGCGCTAACAGCACTACAGTGTTGCCAAAGGTTGTACGGCAGGATCACTGCTGATGGACTAATTGAGGTGACTGGACTTGTTCCTGAAAAATTGGTTAATGAGTACCTAAGCATCAAGAACTATTCAGAATTGGAGGAATTTGTTCAGAATTTCCTGATGCGAGCGTATTCGGCATCGCAGCTTCTGGAACAGTTGAGTGCCACGGTTGTGGCGGCTGGACATCTAACGAATAAACAGAAATGCGCCATAAGTGAGAAGACGGCCGTCTGTCTGCATCGTCTGCTCGACGGAGGATCGGAATTCATGCAACTAACTGATTTAGGGTGCACCCTAATTATGGCCAACAATAATCCTTGA

Protein

MQAFLKTGKISAGDKASTSGVKTTNKKKPPAPWVEKYRPKTIDDIVDQGEVVQVLRECLSGGDLPHLLFYGPPGTGKTSAILAAAKQLFGDISRDRVLELNASDERGIQVVRDKVKAFAQLTVSGKRADGRPCPSYKLVILDEADSMTTAAQAALRRTMERETRTTRFCLICNYVSRIIPPITSRCSKFRFKPLARENVIKRLREICEAENVDVGEGEILNQAVDTCEGDLRRALTALQCCQRLYGRITADGLIEVTGLVPEKLVNEYLSIKNYSELEEFVQNFLMRAYSASQLLEQLSATVVAAGHLTNKQKCAISEKTAVCLHRLLDGGSEFMQLTDLGCTLIMANNNP

Uniprot

Q1HPL1   A0A2H1VJU9   A0A3S2NXB4   A0A212F0F0   A0A194PQT7   S4PBU7   + More
A0A194R7E3   A0A2A4JDE2   A0A0L0BWA7   A0A0A1X358   A0A034WIH9   A0A0K8W9Y1   A0A1I8NPA6   B4JFV6   A0A1I8M652   W8C534   A0A2J7PEN3   A0A0M4EV34   B4LY35   B4KB53   A0A2Z5TRE3   A0A0A9W4U9   A0A1Y1NK32   A0A0Q9WQT7   A0A1B0DL14   A0A1B6DZ74   B4GW04   A0A182T024   A0A1B6L631   Q29G67   A0A1Q3EVT6   A0A1A9X2B5   A0A1B6ELG5   A0A1Y9H9H4   D2A2P4   A0A1A9XUN4   A0A1B0AZQ5   B0W3L3   B4NEB6   A0A336K6C7   A0A182JYA3   A0A182XVN7   A0A1B0GDG7   A0A182N6N1   A0A1W4VLT2   B4Q2K7   A0A067RGL1   A0A182M2D5   A0A1A9ZHV5   A0A182P2Z7   Q9VX15   A0A182W0E0   A0A1I8JVY7   A0A1C7CZU8   A0A182HIZ5   Q7QBM4   A0A1A9UIK0   A0A182RXB5   B3NWY0   A0A182GWB8   A0A0T6B3I3   A0A182G459   A0A1S3CZ52   T1IN72   W5J729   A0A3B0JQG1   Q1HQP1   A0A182IWD7   A0A1S4E9F1   K7IZT6   A0A2R7WFW9   E0W2F5   A0A2R5LFN6   A0A182FKR6   A0A293M3C4   A0A232F328   B3MQX5   A0A023GLD4   C3Z899   R4WQH8   G3MPW0   E9HJL3   A0A1Z5L5W4   A0A146KNQ4   A0A182TEW2   A0A131YRE2   A0A2H8TVZ7   L7LTI3   A0A0P6FY37   A0A0P5XLQ0   A0A3R7MMM1   A0A2S2QCJ7   A0A0P6CW20   J9K5U8   A0A224YXW4   A0A182V2C6   A0A147BP73   A0A2A3ELX4   A0A084W501   W4Z837  

Pubmed

19121390    22118469    26354079    23622113    26108605    25830018    + More
25348373    17994087    25315136    24495485    26760975    25401762    28004739    15632085    18362917    19820115    25244985    17550304    24845553    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    20966253    12364791    14747013    17210077    26483478    20920257    23761445    17204158    17510324    20075255    20566863    28648823    18563158    23691247    22216098    21292972    28528879    26823975    26830274    25576852    28797301    29652888    24438588   

EMBL

BABH01023670    DQ443391    ABF51480.1    ODYU01002691    SOQ40524.1    RSAL01000115    + More
RVE46903.1    AGBW02011130    OWR47171.1    KQ459602    KPI93495.1    GAIX01005742    JAA86818.1    KQ460615    KPJ13748.1    NWSH01001887    PCG69786.1    JRES01001243    KNC24313.1    GBXI01008730    JAD05562.1    GAKP01004468    JAC54484.1    GDHF01004316    JAI47998.1    CH916369    EDV93587.1    GAMC01002002    JAC04554.1    NEVH01026090    PNF14797.1    CP012526    ALC47080.1    CH940650    EDW66901.1    CH933806    EDW15757.1    FX985799    BBA93686.1    GBHO01043719    GBRD01004016    JAF99884.1    JAG61805.1    GEZM01000903    JAV98251.1    KRF82987.1    AJVK01016159    GEDC01006312    JAS30986.1    CH479193    EDW26849.1    GEBQ01020886    GEBQ01018217    JAT19091.1    JAT21760.1    CH379064    EAL32243.1    GFDL01015620    JAV19425.1    GECZ01030995    JAS38774.1    AXCN02000299    KQ971338    EFA02756.1    JXJN01006433    DS231832    EDS31799.1    CH964239    EDW82085.1    UFQS01000118    UFQT01000118    SSX00021.1    SSX20401.1    CCAG010011880    CM000162    EDX02648.1    KK852521    KDR22128.1    AXCM01005162    AE014298    AY069598    AAF48768.2    AAL39743.1    APCN01002105    AAAB01008879    EAA08477.3    CH954180    EDV46527.1    JXUM01092913    KQ564019    KXJ72923.1    LJIG01016095    KRT81629.1    JXUM01042313    KQ561319    KXJ78997.1    JH431152    ADMH02002044    ETN59781.1    OUUW01000003    SPP77700.1    DQ440403    CH477406    ABF18436.1    EAT41594.1    KK854768    PTY18542.1    DS235878    EEB19811.1    GGLE01004021    MBY08147.1    GFWV01010515    MAA35244.1    NNAY01001176    OXU24863.1    CH902622    EDV34180.1    GBBM01001505    JAC33913.1    GG666593    EEN51223.1    AK417941    BAN21156.1    JO843911    AEO35528.1    GL732663    EFX68037.1    GFJQ02004285    JAW02685.1    GDHC01021304    JAP97324.1    GEDV01006734    JAP81823.1    GFXV01005533    MBW17338.1    GACK01009929    JAA55105.1    GDIQ01052031    JAN42706.1    GDIP01070259    JAM33456.1    QCYY01001051    ROT80914.1    GGMS01006254    MBY75457.1    GDIQ01087712    JAN07025.1    ABLF02019633    GFPF01011301    MAA22447.1    GEGO01002830    JAR92574.1    KZ288215    PBC32707.1    ATLV01020439    KE525302    KFB45295.1    AAGJ04017767   

Proteomes

UP000005204    UP000283053    UP000007151    UP000053268    UP000053240    UP000218220    + More
UP000037069    UP000095300    UP000001070    UP000095301    UP000235965    UP000092553    UP000008792    UP000009192    UP000092462    UP000008744    UP000075901    UP000001819    UP000091820    UP000075886    UP000007266    UP000092443    UP000092460    UP000002320    UP000007798    UP000075881    UP000076408    UP000092444    UP000075884    UP000192221    UP000002282    UP000027135    UP000075883    UP000092445    UP000075885    UP000000803    UP000075920    UP000076407    UP000075882    UP000075840    UP000007062    UP000078200    UP000075900    UP000008711    UP000069940    UP000249989    UP000079169    UP000000673    UP000268350    UP000008820    UP000075880    UP000002358    UP000009046    UP000069272    UP000215335    UP000007801    UP000001554    UP000000305    UP000075902    UP000283509    UP000007819    UP000075903    UP000242457    UP000030765    UP000007110   

PRIDE

Q1HPL1    Q9VX15   

Pfam

PF00004   AAA        + More
PF08542   Rep_fac_C
PF00071   Ras
PF00514   Arm

Interpro

IPR008921   DNA_pol3_clamp-load_cplx_C        + More
IPR027417   P-loop_NTPase       
IPR013748   Rep_factorC_C       
IPR003959   ATPase_AAA_core       
IPR003593   AAA+_ATPase       
IPR003578   Small_GTPase_Rho       
IPR001806   Small_GTPase       
IPR005225   Small_GTP-bd_dom       
IPR011989   ARM-like       
IPR000225   Armadillo       
IPR028435   Plakophilin/d_Catenin       
IPR016024   ARM-type_fold       
IPR028446   JAC-1       

SUPFAM

SSF48019   SSF48019        + More
SSF52540   SSF52540       
SSF48371   SSF48371       

Gene 3D

1.25.10.10    

ProteinModelPortal

Q1HPL1   A0A2H1VJU9   A0A3S2NXB4   A0A212F0F0   A0A194PQT7   S4PBU7   + More
A0A194R7E3   A0A2A4JDE2   A0A0L0BWA7   A0A0A1X358   A0A034WIH9   A0A0K8W9Y1   A0A1I8NPA6   B4JFV6   A0A1I8M652   W8C534   A0A2J7PEN3   A0A0M4EV34   B4LY35   B4KB53   A0A2Z5TRE3   A0A0A9W4U9   A0A1Y1NK32   A0A0Q9WQT7   A0A1B0DL14   A0A1B6DZ74   B4GW04   A0A182T024   A0A1B6L631   Q29G67   A0A1Q3EVT6   A0A1A9X2B5   A0A1B6ELG5   A0A1Y9H9H4   D2A2P4   A0A1A9XUN4   A0A1B0AZQ5   B0W3L3   B4NEB6   A0A336K6C7   A0A182JYA3   A0A182XVN7   A0A1B0GDG7   A0A182N6N1   A0A1W4VLT2   B4Q2K7   A0A067RGL1   A0A182M2D5   A0A1A9ZHV5   A0A182P2Z7   Q9VX15   A0A182W0E0   A0A1I8JVY7   A0A1C7CZU8   A0A182HIZ5   Q7QBM4   A0A1A9UIK0   A0A182RXB5   B3NWY0   A0A182GWB8   A0A0T6B3I3   A0A182G459   A0A1S3CZ52   T1IN72   W5J729   A0A3B0JQG1   Q1HQP1   A0A182IWD7   A0A1S4E9F1   K7IZT6   A0A2R7WFW9   E0W2F5   A0A2R5LFN6   A0A182FKR6   A0A293M3C4   A0A232F328   B3MQX5   A0A023GLD4   C3Z899   R4WQH8   G3MPW0   E9HJL3   A0A1Z5L5W4   A0A146KNQ4   A0A182TEW2   A0A131YRE2   A0A2H8TVZ7   L7LTI3   A0A0P6FY37   A0A0P5XLQ0   A0A3R7MMM1   A0A2S2QCJ7   A0A0P6CW20   J9K5U8   A0A224YXW4   A0A182V2C6   A0A147BP73   A0A2A3ELX4   A0A084W501   W4Z837  

PDB

1SXJ     E-value=2.20973e-70,     Score=674

KEGG

733023    K10755 replication factor C subunit 2/4 | (RefSeq) replication factor C4

PATHWAY

03030    DNA replication - Bombyx mori (domestic silkworm)
03420    Nucleotide excision repair - Bombyx mori (domestic silkworm)
03430    Mismatch repair - Bombyx mori (domestic silkworm)

GO

GO:0003677   GO:0006260   GO:0005524   GO:0016021   GO:0031391   GO:0006261   GO:0005663   GO:0005634   GO:0003743   GO:0003887   GO:0016787   GO:0003924   GO:0007264   GO:0005525   GO:0032956   GO:0045296   GO:0098609   GO:0010172   GO:0005913   GO:0015074   GO:0005739   GO:0016776   GO:0006811   GO:0016020   GO:0016876   GO:0043039  

PANTHER

PTHR10372:SF27   PTHR10372  

Length:

351

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.02625

Exp number, first 60 AAs:

0

Total prob of N-in:

0.01665

outside

1  -  351

 

 

Pi

22.856014

Theta

18.964469

Tajima's D

0.365893

CLR

0.989178

CSRT

0.48137593120344

Interpretation

Uncertain