The Silkworm Genome Information Database

Gene

KWMTBOMO09146

Annotation

hypothetical_protein_M513_07274_[Trichuris_suis]

Location

Bomo_Chr15(+):12157218-12157929 View in EpiBrowser

Location in the cell

Cytoplasmic Reliability : 1.915 Nuclear Reliability : 1.238

CDS

ATGCTTGATCGTTTACACCTTGCAAAAATTGTTCGTGATCCAGCAATAGAAAAAATGGAAGTGGCGTTGTCATTTTGGATTGAAGACTGCAACCAAAAAAGGGTGCCTCTGAGTGGTGCAATGGTCCGGGAGAAGGCGAAGCGTCTTTACGCACATTTTAAAGAACCTGATGGTAGGTGTGGTGGTGGTGAATGTACAGATGGAGGATTTCAAGCATCGGAAGGTTTAAGAATGGCAAATGAGCTTTGTGATTTCTTTATGAAAATTGATCCATCTATGGAACGAAGTCTTATTTTTAAAAAGCAAATTGCTAATGCCACTGCTGAATATCAGTCTGAATTGATGGAGCTTTTAAAAACTGCCAAGCAAGAAAAAATTACAAAATTATTTAATCCATTTCTGAAGCCTGAAGATAAAAAATAA

Protein

MLDRLHLAKIVRDPAIEKMEVALSFWIEDCNQKRVPLSGAMVREKAKRLYAHFKEPDGRCGGGECTDGGFQASEGLRMANELCDFFMKIDPSMERSLIFKKQIANATAEYQSELMELLKTAKQEKITKLFNPFLKPEDKK

Uniprot

H9JDF2 A0A1A9VDB6

Pubmed

19121390

EMBL

BABH01030051

Proteomes

UP000005204 UP000078200

PRIDE

H9JDF2

Pfam

PF03221 HTH_Tnp_Tc5

Interpro

IPR006600 HTH_CenpB_DNA-bd_dom + More
IPR009057 Homeobox-like_sf

SUPFAM

SSF46689 SSF46689

ProteinModelPortal

H9JDF2 A0A1A9VDB6

KEGG

NA

GO

GO:0003677 GO:0016021 GO:0006508 GO:0015074 GO:0005739 GO:0016776 GO:0006811 GO:0016020 GO:0016876 GO:0043039

Length:

140

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0

Exp number, first 60 AAs:

0

Total prob of N-in:

0.11735

outside

1 - 140

Pi

194.839856

Theta

199.82017

Tajima's D

-0.103792

CLR

0

CSRT

0.334033298335083

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics