SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO09141
Pre Gene Modal
BGIBMGA014213
Annotation
hypothetical_protein_TcasGA2_TC002200_[Tribolium_castaneum]
Location in the cell
Nuclear   Reliability : 4.495
 

Sequence

CDS
ATGGGTATTAAAGTATTGTCTCCCATAACATTCATGAAAGTGGGCATCCCGGACCCTGGTTTTTCACACATTATGAGCTTTAGGAGACAAGTATACGTTTCCCCTGAGGATGAAAAAAGATTACCAGAATCGATGCAAATTAACTATGATGAAACCAATTATTGGATTTATATTACAAACGAAACAATGAAATGTCTTGTATGTAATGGAATGGGACACTTGGCAAAATACTGTCCGCAAAGCAGTCAACAGGTTCTTGGTACCAAAGGCCCTAACAACCTCACGCAAGACAATTCAACTACTTCCAATGACACTACAGTCGAATCCAACAAGCTACCGTCACAGTCTCTCAATTCTACAATTAATCTTGAATATGAAATAAACCAAATCTACCCCCCTACTGAAATTTCCAAACCGCAAATACCAACAAACTTACTACCACACAATAAATTTGACATATACAAAGGTGTTAAGCGGATTCATCCATCTACCTCTTCAGAACCATCACAACCGGAAATAAATCAAGCTGAACCTACCTTAGATGACAGTAATATTATAGTCAGTGATTACACGGATGAAACCGACAGCAATTGGTCTCTGGACGAAGAACTAAAGAAGACCCCTAAGTCACTCAAGAAGAAGAAGAAAACTCTCGATGACAGAAGTGAAGAACAAGTTTGGAAGGATATTAAAACAGAGCTGGATCAGTCAGAAACACAACCTCACTTCCCACTCACCTTAGACCAGTTTATTAGTTTTTTAGATAATTCCCGTAGCAAACAAAATCTTCAAGAACTTATCAAAGACTATACGGATGATATCCCGGAACTAATTGATATGTGCACGTTTCTCCGCACTAAAATGAATTTAAATAGGAACCTCAAAAATAGATGTACAAGATTAGTTAAGAAACTAGAACTTATCAAACTGTTAGAAACCAGTAACAAGCCATAG
Protein
MGIKVLSPITFMKVGIPDPGFSHIMSFRRQVYVSPEDEKRLPESMQINYDETNYWIYITNETMKCLVCNGMGHLAKYCPQSSQQVLGTKGPNNLTQDNSTTSNDTTVESNKLPSQSLNSTINLEYEINQIYPPTEISKPQIPTNLLPHNKFDIYKGVKRIHPSTSSEPSQPEINQAEPTLDDSNIIVSDYTDETDSNWSLDEELKKTPKSLKKKKKTLDDRSEEQVWKDIKTELDQSETQPHFPLTLDQFISFLDNSRSKQNLQELIKDYTDDIPELIDMCTFLRTKMNLNRNLKNRCTRLVKKLELIKLLETSNKP

Summary

Pfam
PF00098   zf-CCHC
Interpro
IPR036875   Znf_CCHC_sf        + More
IPR001878   Znf_CCHC       
SUPFAM
SSF57756   SSF57756       

Ontologies

Topology

Length:
317
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.01906
Exp number, first 60 AAs:
0.01819
Total prob of N-in:
0.00977
outside
1  -  317
 
 

Population Genetic Test Statistics

Pi
0
Theta
0
Tajima's D
-0.842063
CLR
0.435653
CSRT
0
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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