SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO09136  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA007553
Annotation
C-type_lectin_16_precursor_[Bombyx_mori]
Location in the cell
Extracellular   Reliability : 3.965
 

Sequence

CDS
ATGAAGACATCAGTACTCGTATTAGCTGCGCTAGCGGTGGTGGCCCAGGCACAGTTCCCCAATGGACGCATCCTGGAGCCTCCGGTGCCTTCTTTGTGTGTACAGAGAAACATCCATGAGAGATACGCTGACAATAAAGGATACTTCTTCTCGTGGCGGGACCCAGCGCTCCGCGGCGTCGAAGAAGACTGGTTGAGCGCAAGAAACTACTGCCGACAACGCTGCATGGACCTAGTATCTCTCGAGACCAGCGATGAAAATGAATGGGTCAAAGCGCGTATTGTCCAGGACAAGATAAAGTACATTTGGACATCGGGCCGTCTTTGTGACTTCAAAGGATGCAACCGACCTGACTTACTACCTAACGAAATAAACGGTTGGTTCTGGACTGCTGAGCTGCAGAAGTTGGCTCCCACCACCAACCGTCAACAGAACGACTGGTCCGAAGGTGGCGGCATTGGAAAACCGCAACCTGATAACCGGGAGCTGATACAAGGAGGCGCTTCTGAGCACTGCGTCGCAATCTTAAACAACTTCTACAACGACGGTGTCCACTGGCACGACGTCGCCTGCCACCACCGCAAGCCATTCGTTTGCGAAGAAAACGACGCCCTCCTCAAATACGTCAGATATACCAATCCTAACTTAAGAGTTTAA
Protein
MKTSVLVLAALAVVAQAQFPNGRILEPPVPSLCVQRNIHERYADNKGYFFSWRDPALRGVEEDWLSARNYCRQRCMDLVSLETSDENEWVKARIVQDKIKYIWTSGRLCDFKGCNRPDLLPNEINGWFWTAELQKLAPTTNRQQNDWSEGGGIGKPQPDNRELIQGGASEHCVAILNNFYNDGVHWHDVACHHRKPFVCEENDALLKYVRYTNPNLRV

Summary

EMBL
DQ898219    ABI79325.1    BABH01030069    RSAL01000115    RVE46913.1    GQ120500    + More
ACR78452.1    NWSH01001662    PCG70494.1    KY111306    AQX37242.1    KQ459602    KPI93487.1    ODYU01004370    SOQ44179.1    KQ460615    KPJ13737.1    AK401235    BAM17857.1    AK402319    BAM18941.1    AGBW02013545    OWR43225.1    JTDY01000728    KOB76087.1    KX550114    AQY54431.1    UFQS01000016    UFQT01000016    SSW97457.1    SSX17843.1    KQ971322    EFA01339.2    APCN01002263    APCN01002264    AXCM01002383    AXCM01002384    LJIG01000514    KRT86426.1    AP017517    BBB06860.1    AXCN02000455    AAAB01008960    EAU76601.1    CVRI01000035    CRK92692.1    DS231886    EDS43382.1    GFDL01005515    JAV29530.1    NNAY01000478    OXU28106.1    DQ377067    ABD60991.1    KA648614    AFP63243.1    CH478126    CH478056    EAT33884.1    EAT34165.1    EJY58059.1    JXUM01090266    JXUM01090267    JXUM01090268    KQ563828    KXJ73210.1    GDHF01032441    JAI19873.1    GAKP01005243    GAKP01005242    JAC53709.1    JRES01000223    KNC33206.1    GBXI01001675    JAD12617.1    GL447755    EFN86014.1    CP012526    ALC46363.1    GAMC01003407    JAC03149.1    PYGN01000600    PSN43551.1    CH933806    EDW15580.1    CH964232    EDW81270.1    CH902617    EDV41951.1    CH940650    EDW66793.1    KK107185    QOIP01000012    EZA55812.1    RLU15747.1    CH954181    EDV49394.1    CH916373    EDV95085.1    OUUW01000008    SPP84433.1    CM000070    EAL28652.1    CH479182    EDW34481.1    KK853131    KDR10900.1    CM000364    EDX13240.1    CH480815    EDW42482.1    AE014297    BT030988    AAF54782.2    ABV82370.1    KQ981864    KYN34366.1    CM000160    EDW97072.1    KQ979568    KYN20773.1    KQ976662    KYM78428.1    ADTU01019320    KQ977115    KYN05608.1    GL442545    EFN63351.1    GL888818    EGI57793.1    GEMB01000604    JAS02528.1    NEVH01021953    PNF19019.1    FX985244    BAX07257.1    KQ982314    KYQ58021.1    FX985243    BAX07256.1    KZ288430    PBC25832.1    GL767119    EFZ14123.1    ACPB03000427    GECU01031519    JAS76187.1    KQ414657    KOC65801.1    GEDC01019781    JAS17517.1    GDHC01016215    JAQ02414.1    GBHO01042245    JAG01359.1    APGK01034109    KB740904    ENN78440.1    KQ760118    OAD61924.1    KQ434893    KZC10594.1    KQ435757    KOX75842.1    KB632006    ERL87951.1    GBRD01018165    JAG47662.1    APGK01003087    APGK01018482    APGK01018483    KB740076    KB735111    ENN81657.1    ENN83445.1    KB631643    ERL84921.1    PYGN01000830    PSN40257.1    KK852561    KDR21331.1    FX985238    BAX07251.1    ODYU01012907    SOQ59446.1   
Pfam
PF09497   Med12        + More
PF12145   Med12-LCEWAV
PF00059   Lectin_C
Interpro
IPR016186   C-type_lectin-like/link_sf        + More
IPR001304   C-type_lectin-like       
IPR018378   C-type_lectin_CS       
IPR016187   CTDL_fold       
IPR019035   Mediator_Med12       
IPR021990   Mediator_Med12_LCEWAV       
SUPFAM
SSF56436   SSF56436       
Gene 3D
PDB
5VC1     E-value=0.0119463,     Score=87

Ontologies

Topology

SignalP
Position:   1 - 17,         Likelihood:  0.998596
 
 
Length:
218
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.44215
Exp number, first 60 AAs:
0.44215
Total prob of N-in:
0.07732
outside
1  -  218
 
 

Population Genetic Test Statistics

Pi
262.123458
Theta
185.035012
Tajima's D
1.18638
CLR
1.411187
CSRT
0.710464476776161
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
Peptides ×
Source Sequence Identity Evalue
26822097 GVEEDWISAR 100.00 2e-07
24093152 QQIINYMNR 100.00 2e-07
29197581 KPFVCEENDAIIK 100.00 2e-07
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