SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO09134
Pre Gene Modal
BGIBMGA007554
Annotation
PREDICTED:_mediator_of_RNA_polymerase_II_transcription_subunit_12-like_isoform_X1_[Papilio_xuthus]
Location in the cell
Nuclear   Reliability : 3.595
 

Sequence

CDS
ATGTACGAAAAGCGTCCGCTAAAAAGGCCGAGACTTGGACCTCCGGACGTGTACCCCCAAGAGCCGAGACAAAAAGAAGACGAACTAACTTCCACAAACGTAAAACATGGATTTTCTACAACTCCTCAGTCGAGTGATGAATTTGGAACTGCTAGGAATTACAATTATTCTACAGCCAAGATTGGTCAGTTTTTCTCTGGTATTTTATCAAAGAAAGAAGAGTTGAATACATTACCTGACTGTGGTAGAAAGAGACAGCAAGTAAACCCAAAAGATAACTTTTGGCAAGCCACAGCCAGAACTAAACCACAAATTGAAGTATGGTTCAAAGATCTTGCAGGAAACAAACCTCTAGCTCAACTTGCAAAAAGAGCTCCTAATTTCAACAAAAAAGAAGATATTTTTATCACACTGACTGAGTACCAAGTTCCCATGCCAAGAGCAGCATGGTTCATTAAACTTAGTTCTGCATATACTGTGGCAGTTTCAGAAGCTAAGATTAAAAAAAGACAGTTACCAGATCCCACTACAGAATGGACTACTACTTTAATAAAGTTCCTTAAAGACCAGATACCAAAACTTAGTGAATACTACCAGAGCGTAGCACCTGGTAATATTTCTGATAAAACACCTCCTTCACAATCAGGACCAGGCACCCCAAGTCATAACTCATCAGGCAATGCTCCTGGCAACTCCACACCAAATTCCACAGTTCCAAACAGCCTACATTCCCCAGGAAATTCAGCAAACATGGGATCGTCAACTCCTGGGAATGAAAGCACAGATTGGCGACAGGCGCTCAAATTGTGGCACTACTGCTGTCGTCTCGCTAAGTACTTGCTTGATGAAGGGCTCCTTGATAGACACGATTTCTTAACTTGGGTTATTGAGTTGCTTGATAAAAGGATGCCTGATGATGGACTTTTAAGATTATTTCTCCCCCTGACCTTACAGCACATGAATGAGTTTGTGGACTGTGAAGGTCTATCGCGGAGACTGGCTACCACTTGTGCTAAAAAAGCCGCCGCAATATGCTCAGTACTATCGGAAGCCACACTACGCGCACTAAACCAACCGGCTGTATTCAACAGACCTGCCGAGAAGAGTACAGAATCAAACACTCAGCCAATGTCACCAGCGCCTGAGAGTAACGGCGATGTAAAACCTAATATAGCCCAAATAAAGCGTTCAGGCACACCAGCAGAGCAGAGTCAGGGCACTCCCAACCCTAACCATTCAATGGGCACTCCAAACCCGAACCATTCTATCGGAACCCCAAACCCACAGCAACCTATGGAGGTACAAGGGAAGGAAGACAGTGTATCACCACCTCGTGACGTGAAGACTACAGTGAACACTGTAATAAACGCATCGATGAACCCAGTTCAAGTTGGGTTCGGTGAAATCTTGAATTGTTCATTTCATAGAGATGTCATCATCCAGCTTGCCACCATATTGCAGGTTATTTGTGTCGATTGTCCAACGGCAATGGTTTGGTCCGGGTGTGGATCTTCACTCCAAGGGTCTCCCCTGGACTTGCTACCGGTACCACCATCGTCATTACCGATGCCTCACATGGATTCTGAGATAACAGAAGAACACAGACGCTTAGTGTATGAAGCTGAACAAGAAATATCTGCTAGAAGTAAAAAAGCAGAAAGCAAGTGGTGCACCGACAAATGGCAGACAAGTTCACAAGCTCGAGTGTTGGCTGTGCTGGAGGCACTGGACAGGCACTGCTTTGATCGCGTCGATCCGAATAACAACCTGGATACACTCTACAAAGAAGTGTTTATAAATTGCACGCCCCCTTCCAAAGACGGGGCCATTGACACGAAAGATCCGGAGTGGGCGTGTTCGTACGCAGTGGTGCGTGTGCTGTGCGAGTGGGCGGTGTGCGGCGCACGTTGGGGCGAGCACCGCGCGCTCGCCGCCGCCGCGCTGCTGGACCGGAGACAGCAGCAGCTGCAGCACCTACATCACGACCACCATGCCACCGGTTCGGATGACAAAGAGTCTGTGAGTTCTGGCACCGGAATTTGTAGCGGTCCACCGATCTTCCAAAACCTCCTGCTACGGTTTTTGGATAACGATGCGCCTGTACTAGACGAAAGCCCGAACGCTCCTCCTGGTAATAGACAACAATTCGCGAATTTAGTTCATCTGTTCGGAGAGTTGATAAGGCGGGACGTCTTCTCACACGATGCCTATATGTGCACTTTGATTTCAAGAGGTGATTTAATATCGCCGACCGAGCCCACGTCGACGATCGGCAACAGTATCCAAACGGTGGCGCCACCTGCCAGCAGCTCGGGAACCAATCACAATGTGAACGACGAAATCTTCGCGGGAATCGATCTGAAACCTAAAATGGAGGAAAACGTGCGAATGGACTTGGACGATTCCAGAATAGACGACGATCTCGACAAATTGCTCCAGCACATAAAAGAAGATCAACAGAATTCTATGGACGCTCCAGACAGTCCCAAAGACCCCGGCGAAACATCTCACAGTGTTAATTCGCCGATGATGGGGCCGGGTGGTATGACGATACCGGGGATACCGTCCATAGGAATGGGGCCGATGTCTGTGCCCGGGATACGCACCGGCAGCGCGGGTCCCTCGAGCGCGGGCGGCTGCGCGGCGGCGTCTCGGCACTACCACTACACCATGCACTTCCCGCTGCCGCCCGCCGAGCCCGACCACGCGCCGCACGACGCCAACCAGCGCCACATCCTGCTCTACGGAGTCGGCAGGCAGAGGGACGAAGCCAAACACGCCGTCAAGAAGATGACTAAAGAAATCTGTAAGTTATACTCGAAGAAGTTCTCGATCGATGTCGCGGAAGGGGGAAAGATCAAGAAACATTCCCGCAGCGAATTTAATTTTGAAGCCGTCACGCAAAAATTTCAAGCGATGTCGATGTACGAGCAAGGCGCCGTGTCGTGGGCCGTGGGCGGCGCCGTGTGCGAGGCGCTGGCGGCGTACGCGGCCGGAGCAACCACGTACTTGCCTCAGCCCGAGCACGTGGCCTTCGCTTTAGACCTCATGGAAATTGCGCTCAACGTACACGGCCTCATCGAGACCTGCATCCAGATACTAAAAGAATTGTCGGAAGTTGAAGGAGTATTAATAACACGAGGCACGCCCAGCAGTGGGATCGCGACCCCGCGGGCGTACACGTCTGCACTGGCGCTGTACACCGTCGGAGCGCTCCGCAGATATCACTCGTGTCTACTGCTGTGCGTGGAACAAACGTCGGCTGTGTTCGAGCAGCTGTGCCGGCTTATGAAGTCGGTCGGCAACCCGGACGACTGCGGCTCGGCGGAGCGCTGCGTGCTGGCTCTGCTTCACGACCTGTACAAGGCGGCCGCGCATCTGTGCCACGCGCCGCACGCCGACACCTTCGCGAACGCATACCCGAAAATCAAGCAAGCCCTGTACTCCCCGCTGCAACCAATACCTTCAAACTACGTATACAACCCTGAGTTCTTGAGTGACTTCTTCACGAATCCGCGGAAAGGAAAAATGGAGATATCATGGGCGCGTCAAATCGCCGAATCGCCTTCGAACCGATACAGCTTTGTGTGTTCAGCGATGCTCGCCGTTTGTCGAGAAGTTGACAATGATCGAGTGAACGAGTTGGGCGTGGTGTGCGCGGAGATGACGGCGTGGTGCAGCGGGCTGGCGGCGGAGTGGCTGGGCGCGCTGGTGGCGCTGTGCGGCGCGCAGCACTACCCCGGCGGCACTGCGCCGCACCCGCCGCTGTACCCCGACCTGCTGCGCCAGCGCGACCTGCACGACGCCAGCGCGCACGACGCGCTCGCCGTCTTCACCTGCATCCTCGTCGCCCGGCACTGTTTCTCGCTGGAGGATTTCATGCGTCACGCCGCGCTGCCGTCCCTGCTGAAGGCGTGCGGCGGCGGCGGCTCGACCGGCAACCCCGCCAACGCGCCCTCGACCGACACGGGCGGCCGGCTCACGTGCCATCTCTTGCTTAGATTGTTCAAAACGGTCGACACTCCACAGCCCGGTTTGTATTCAGTGTCGACGTCGCCCGGTCCCGGCGGCGCCGCGGCGGGCGTGCGGCTGTCGTGCGACCGCCACCTGCTCGCCGCCGCGCACAAGAACATCGGCGTCGCACCCGTCCTCGCTACGCTTAAAGCCATACTCATGGTCGGTGATTCGGCGCGTGACGGCGGCAAGATAGGCAAGAAGTCATGTGAACTGTCGCACATACTGGGCACGAGCGACGCGGTGCCAAGCGACGCGCAGCTCGACCTCTTGTCGATGGTAGATTCAGAGATGAGTGGGGGCCATAGAACTCCTAGAGGGGGCGGCGGAGTTGGGTCGTCTTTGCTAGATTCGTCGCAGTCGCTTTCCTCGTTTGCCAGGAAAGTGCTAGCGGAAATATGCTCCGAAGAATGGGTGCTGCAGAAGTGCCTTCAGAATCCGGATGAGCTGTACCAGACTGGCATGCTGCTCGATTCCATGATCACTCCAAAACAAGCGCAGAGGTTATTGCATATGATCTGTTATCCGGATTCAGCGAGTCACACACATCCGGACTTGGATCAGAAGACTATGATCACTCGATTATTAGAGAACCTAGAACAATGGTCACTAAGAATGTCGTGGCTAGACCTTCAGTTGATGTTCAAGCAGTTCCCCGGCGGTTCCCCGGAACTGTCGGCGTGGCTGGACACGGTAGCGCGGGCCATCATCAATGTCTTCCAGCAGCCAGCGCCGCCACCGCCAGACAAGGACAGAATGGGAACAGACCGCGGAGTCGTCAGCACCAGTAAGTGGTCGGACTCTGTCTGGTTGGTGGCGCCGCTCGTCGCCAAGCTGCCTCCGGCGGTACAGGGCCGTGTTCTCAAGCAGGCCGGTCAGATCTTAGAGAACGGCTGGGGCGCCGGGTGCAGCGGCAACTGTGCGGGGGGGAGCGGCGGAGGGGGAGGCTCTCATCGGGATTGTAAAAGCCACCAAAGCCCTAGTTACAAAGGATCCTCGACGGGCGGCAGCGGCGGTAAGCGCGGCGTGAGCAGCGGCGCGTGCGGCGGCGGCTGCGCGTGCGGCGGCAGCAACGCCGTCAGACTCGCCAACGAGCCCCTGCTGTCCCTCGTGCTCACATGCCTGAGGAACCAAGATGATCAGAAGGAAAGCCTGTTGAGTTCGATCCACGCGCAACTGCAGCACTACCTGACGCACGCGCGCGACCACGAGCGCTCCGCGTGCAACGACACGTGGCACGACGAGGTGGCCCCCGAGGCGCTGCAGCTGCGCTTCTCGCTGGCCGGCGGGATGTTCGACGCGATACGCCGCTCCTACCAGCTCACCTCCGACTGGGCCGTGCTGCTCACTCAGCTGGTCGCGCACCAGGTGGTCGACGCGTACAACAACAGTCTGTGTCGCAGCAACCTCTTCAACACTTTGATCGACATGCTGGCCACTCTGATACACTCGACCCTCGCGGACGGGGGCGACGACAACAACAGGAAACACTACCAGAACCTCATGAAGAAACTGAAGAAGGAGATAGGAGACCGGCACGGGCCCTCCGTGCAGTGCGTCAAACAGCTCCTACCGCTCTCTAAGAACACCATCATTGAGGTGATCGCATGCGAGCCACTCGGCTGTCTGGTCGACCAGAAGGGAAACAAAATCACCGGCTTCGACAGCGACAAGAAACAGGGACTACGTTTGACGGAGAAGCAGCGCGTGTCGGTGTGGGAGCTGGTGGAGGGCGGGCGGAACCCGGCGCCACTGTCCTGGGCGTGGTTTGCGGCCACCAAGATCGAACGGAAACCACTCACCTACGAAAATGCTCACAAATTACTGAAGTTCCACACGCACAGCATGGTGAAGCCGCTGAGTTACTACCTGGAGCCCTTGCCCCTGCCCCCCGAGGACCTCGAGACGAATGATAATAAACAGGACAATGAGAGCCTCGAATCGAGCCCGACCGGCGCCGGTAAATCAAGATCGAGATCGGTGTCCGGGAAGAATATAAAGAAGATGAAACCATCGACACCGACAAACAGCTTAAATGGAAACGGAATGGCGGGCGGGCCCAGCAACATGGCGCCGGCCACCGCACAGCAGCCGCAGTTCATGCACCAACAACAGCAGTGGTTTCCGCCTCCAGGACAAAACTATTACAACCAACCAGCCGGTGTAAACACCCGCGGCGTCGCCCCGCCCTCCAATACCCAGTCGAAACAAGCGCTCAGCAACATGCTTCGGCAACGCGTACCGTTCAATCAGATGACACAAATGCAGCAGGGCACCGGATATCCCGCAGCACCGCATAGAGGTCCATTCCCGCCCCGGCAGAGCATTAGGCCGATGCAACCAAATCAAATGGGCACAATGCAGGCGCAGCAAATGAATCCAATGGGGGGCATGGGCGGCATGGGACCGATGAATCAAATGGGAGGGGTACAGATGCCAGCACAAATGGCCGGAGGGCAAATGAGTTCGGCCCCGATGGGCGGTGCACAAATGGGCGCCGGACAGATGGGCGGTATGGGCGGACAGATGTTCGGCGGACAGTACGGCGGTATGCAACAAAGCTACGCCGGCTACGGGCAACAGATGATGCAGGGCGGACAGCAACAGATGATGTCTCAAGGAATGGGACAGAGCGTTAGCCAAATGGGACAACAAGTCAACGCCATGGGTCAAAGTGTCAATTCTATGGGACAGAATGTCCCCCAAATGAATCAGGGTGTTGGTCAATCTGCACAAATGCCACAAGGCATGAGTCAGATGAACCAAAGCATGGCTCAAATGGGTCAACCTATGAGTCAGATGGGTCAAATGGGTCAAGCTACTGGTATGGGCGGCATGAATACGCAGGCTGGTTCAATGGGTCCTCAAGCTGGCAATGGCATGGGAGCGTTCGCTGGACAACAATCATTCCAGCAGAACATGATGGGTGGTCGCGCCACACAAGAAGCCTATTTAGCACAACAAAGACAAACCGCTCGACCGCCGTACATGCAGCAGGCGCCGAACGTGACGATGGGCGGCATGGGCGGCCCCGCCCCGCCCTACCCGCGCGGCATGCAGCCCCAGCAGAGCACGCAGTACCAGCAACAGATGACGCAGCAACGCATGCGGCAACAGATGCTGGCGATGCAACAGCAACAGCAACAAGGGCCGCTCGTACAGCACCTGCAGCGGCAACAGCAATATCAACCGCCCTATTGA
Protein
MYEKRPLKRPRLGPPDVYPQEPRQKEDELTSTNVKHGFSTTPQSSDEFGTARNYNYSTAKIGQFFSGILSKKEELNTLPDCGRKRQQVNPKDNFWQATARTKPQIEVWFKDLAGNKPLAQLAKRAPNFNKKEDIFITLTEYQVPMPRAAWFIKLSSAYTVAVSEAKIKKRQLPDPTTEWTTTLIKFLKDQIPKLSEYYQSVAPGNISDKTPPSQSGPGTPSHNSSGNAPGNSTPNSTVPNSLHSPGNSANMGSSTPGNESTDWRQALKLWHYCCRLAKYLLDEGLLDRHDFLTWVIELLDKRMPDDGLLRLFLPLTLQHMNEFVDCEGLSRRLATTCAKKAAAICSVLSEATLRALNQPAVFNRPAEKSTESNTQPMSPAPESNGDVKPNIAQIKRSGTPAEQSQGTPNPNHSMGTPNPNHSIGTPNPQQPMEVQGKEDSVSPPRDVKTTVNTVINASMNPVQVGFGEILNCSFHRDVIIQLATILQVICVDCPTAMVWSGCGSSLQGSPLDLLPVPPSSLPMPHMDSEITEEHRRLVYEAEQEISARSKKAESKWCTDKWQTSSQARVLAVLEALDRHCFDRVDPNNNLDTLYKEVFINCTPPSKDGAIDTKDPEWACSYAVVRVLCEWAVCGARWGEHRALAAAALLDRRQQQLQHLHHDHHATGSDDKESVSSGTGICSGPPIFQNLLLRFLDNDAPVLDESPNAPPGNRQQFANLVHLFGELIRRDVFSHDAYMCTLISRGDLISPTEPTSTIGNSIQTVAPPASSSGTNHNVNDEIFAGIDLKPKMEENVRMDLDDSRIDDDLDKLLQHIKEDQQNSMDAPDSPKDPGETSHSVNSPMMGPGGMTIPGIPSIGMGPMSVPGIRTGSAGPSSAGGCAAASRHYHYTMHFPLPPAEPDHAPHDANQRHILLYGVGRQRDEAKHAVKKMTKEICKLYSKKFSIDVAEGGKIKKHSRSEFNFEAVTQKFQAMSMYEQGAVSWAVGGAVCEALAAYAAGATTYLPQPEHVAFALDLMEIALNVHGLIETCIQILKELSEVEGVLITRGTPSSGIATPRAYTSALALYTVGALRRYHSCLLLCVEQTSAVFEQLCRLMKSVGNPDDCGSAERCVLALLHDLYKAAAHLCHAPHADTFANAYPKIKQALYSPLQPIPSNYVYNPEFLSDFFTNPRKGKMEISWARQIAESPSNRYSFVCSAMLAVCREVDNDRVNELGVVCAEMTAWCSGLAAEWLGALVALCGAQHYPGGTAPHPPLYPDLLRQRDLHDASAHDALAVFTCILVARHCFSLEDFMRHAALPSLLKACGGGGSTGNPANAPSTDTGGRLTCHLLLRLFKTVDTPQPGLYSVSTSPGPGGAAAGVRLSCDRHLLAAAHKNIGVAPVLATLKAILMVGDSARDGGKIGKKSCELSHILGTSDAVPSDAQLDLLSMVDSEMSGGHRTPRGGGGVGSSLLDSSQSLSSFARKVLAEICSEEWVLQKCLQNPDELYQTGMLLDSMITPKQAQRLLHMICYPDSASHTHPDLDQKTMITRLLENLEQWSLRMSWLDLQLMFKQFPGGSPELSAWLDTVARAIINVFQQPAPPPPDKDRMGTDRGVVSTSKWSDSVWLVAPLVAKLPPAVQGRVLKQAGQILENGWGAGCSGNCAGGSGGGGGSHRDCKSHQSPSYKGSSTGGSGGKRGVSSGACGGGCACGGSNAVRLANEPLLSLVLTCLRNQDDQKESLLSSIHAQLQHYLTHARDHERSACNDTWHDEVAPEALQLRFSLAGGMFDAIRRSYQLTSDWAVLLTQLVAHQVVDAYNNSLCRSNLFNTLIDMLATLIHSTLADGGDDNNRKHYQNLMKKLKKEIGDRHGPSVQCVKQLLPLSKNTIIEVIACEPLGCLVDQKGNKITGFDSDKKQGLRLTEKQRVSVWELVEGGRNPAPLSWAWFAATKIERKPLTYENAHKLLKFHTHSMVKPLSYYLEPLPLPPEDLETNDNKQDNESLESSPTGAGKSRSRSVSGKNIKKMKPSTPTNSLNGNGMAGGPSNMAPATAQQPQFMHQQQQWFPPPGQNYYNQPAGVNTRGVAPPSNTQSKQALSNMLRQRVPFNQMTQMQQGTGYPAAPHRGPFPPRQSIRPMQPNQMGTMQAQQMNPMGGMGGMGPMNQMGGVQMPAQMAGGQMSSAPMGGAQMGAGQMGGMGGQMFGGQYGGMQQSYAGYGQQMMQGGQQQMMSQGMGQSVSQMGQQVNAMGQSVNSMGQNVPQMNQGVGQSAQMPQGMSQMNQSMAQMGQPMSQMGQMGQATGMGGMNTQAGSMGPQAGNGMGAFAGQQSFQQNMMGGRATQEAYLAQQRQTARPPYMQQAPNVTMGGMGGPAPPYPRGMQPQQSTQYQQQMTQQRMRQQMLAMQQQQQQGPLVQHLQRQQQYQPPY

Summary

Pfam
PF12145   Med12-LCEWAV        + More
PF09497   Med12
Interpro
IPR021990   Mediator_Med12_LCEWAV        + More
IPR019035   Mediator_Med12       

Ontologies

Topology

Length:
2404
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.0186699999999999
Exp number, first 60 AAs:
8e-05
Total prob of N-in:
0.00023
outside
1  -  2404
 
 

Population Genetic Test Statistics

Pi
251.134244
Theta
182.394406
Tajima's D
0.514833
CLR
0.384571
CSRT
0.517974101294935
Interpretation
Uncertain
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