Gene

KWMTBOMO09133

Pre Gene Modal

BGIBMGA007555

Annotation

PREDICTED:_twinkle_protein?_mitochondrial_[Amyelois_transitella]

Location

Bomo_Chr15(-):11866301-11872420      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 1.847 Nuclear   Reliability : 1.341

CDS

ATGCTACATTCCATAAGGATAAATAGATACATTAATAGTTTCAAATCAATAACAAGCAGAAATGATTGGAATTGTTATCAAAAACAAATACACAACATTGGTCTTCAGGATATTCCGAAAATTACAGTTACTGAAATACGAAAAGTATTGCGGCAGAAAGGTTTTGCCGTACAAGACGGATTCACGTCTATAACTACAAAATGTTCGATATGCTCAACAGAACAGAATTGCGAGGACAGCAAGGTTTATATTAACAAAACCACAGGTTATTTCTTATGCTCAAAATGCAACTTGCATGGAGACTGGACAATATTGGAAAGAATAGTCAAAAAGGCCAAAGTAGAAGTTTCAATTAAAGACTACATAGACAAACTACAGAACGATACGGCTTCATTTAAAAATGAATGGGAAAATGTTATCAAAGACACTATGTCTATGTCAGCCCTAAATGAAACTGAACTCTTGGATTTATTTAGGTTATATGAATTTCCTTTCCATTCTGAAGCTGGAAAGACACTTGCTGAGGTCAGAGTATCAGCAGACCGTACAGTATTATATTTTCCATTAAAAAACATTTTAAATCAAGTAGTAGGCTATCGTAAGTTGCAAGCTGGCAATGAAGATCAAATACAATGTTACGGCTTCCATAATGCTGGACTCTTTTCATGTCGAATACAAAGAGGAAGCCGGAGTGATCAAGCTATATTAGTGCCAACTGTTCAGGATGTTTTAAGTTTAGCAGCTCATAAAGTACCAGGTACATTTATTTGGCTCAGCAATTGTAGCCTACCACTAGTAGTATTGCCAACCTTAGAAAATCACCAAAAATTATATCTCTGGGGAGAATGGGACAACATGAGGGCCGTTGCTGAGAAACTTGGTGAAGAAAGATGTAGATTCGTGAGACCGACAGATGGGCTCGTGACAGCAACCGAAGCAGCTGGAGCCGGCTTATCATTGAAGACCCTGGTGTCAGATGCGAAGCCAGCGGCGCATCGATCTATCACGACCTTCGCTGCTCTCCGAGACGACGTTTATGCTGAACTCACGAATATTGATAAGGTTCGTGGAGTTAAATGGCGAAGATTTCCTGCACTAACTCGACTGCTAGGCGGCCATAGACGTGGGGAGCTGACGGTACTAACCGGTCCCACTGGATGCGGGAAGACCACACTCTGCGCCGAGATATCACTAGATCTTGCGCAACAAGGAATAAATACACTATGGGGCAGTTTCGAGATTAGGAATTCGCGACTAGCGCGCACCATGCTGCAGCAGTCCGCCGGCGTGCCTCTAGAACAGAACCTGCATAACTTCCAGAAGTACGCAGATGAATTTCAAAAACTACCGATTTACTATTTAGCCTTTCATGGCCAGCAACCGATCAAAGTTGTAATGGAGGCAGTGGAACACGCAAGATACATGCACGACATCGCGCACGTGGTGGTCGACAACGTGCAGTTCATGTTGGGGCTCGGCGAGGATCGCGACGGCGACCGTTACCTCCGGCAGGATGCCGTCATAGCCGCCTTCCGTACCTTCGCGACCGCCAGACATTGCCACGTCACGCTCGTCATGCACCCTAGAAAGGAAAGGGATTCGGAAGATCTTTCAACTAGCTCCATATTTGGTAGCGCTAAAGCATCGCAAGAAGCTGATAATGTCCTCATAATACAGGATAAACGGTTAACGGCCGTGCGCGGAAAGAAATTTTTACAAGTCGCTAAGAATAGATACAGTGGGGATCTTGGTATTGTTCCGCTGGATTTTGACAAGGACTCCCTTAGTTACCAAGCAAAAAAGAAAAACAAAATAAAACTAGAAGATTCTGAAAAAGTATTGGATGAAGAATATGCAGTCCCCGAACAAAACTATATAGATTTTAACGAAAAACCCCCGCGGCGTGTTTGGTAA

Protein

MLHSIRINRYINSFKSITSRNDWNCYQKQIHNIGLQDIPKITVTEIRKVLRQKGFAVQDGFTSITTKCSICSTEQNCEDSKVYINKTTGYFLCSKCNLHGDWTILERIVKKAKVEVSIKDYIDKLQNDTASFKNEWENVIKDTMSMSALNETELLDLFRLYEFPFHSEAGKTLAEVRVSADRTVLYFPLKNILNQVVGYRKLQAGNEDQIQCYGFHNAGLFSCRIQRGSRSDQAILVPTVQDVLSLAAHKVPGTFIWLSNCSLPLVVLPTLENHQKLYLWGEWDNMRAVAEKLGEERCRFVRPTDGLVTATEAAGAGLSLKTLVSDAKPAAHRSITTFAALRDDVYAELTNIDKVRGVKWRRFPALTRLLGGHRRGELTVLTGPTGCGKTTLCAEISLDLAQQGINTLWGSFEIRNSRLARTMLQQSAGVPLEQNLHNFQKYADEFQKLPIYYLAFHGQQPIKVVMEAVEHARYMHDIAHVVVDNVQFMLGLGEDRDGDRYLRQDAVIAAFRTFATARHCHVTLVMHPRKERDSEDLSTSSIFGSAKASQEADNVLIIQDKRLTAVRGKKFLQVAKNRYSGDLGIVPLDFDKDSLSYQAKKKNKIKLEDSEKVLDEEYAVPEQNYIDFNEKPPRRVW

Similarity

Belongs to the adaptor complexes medium subunit family.

Uniprot

H9JDF8   A0A2H1V7F5   A0A2A4JEX7   A0A194PL74   A0A437B8P4   A0A212EP18   + More
A0A194R8A4   A0A0C9R5I6   U4UJU4   D6WGI5   A0A154NYF6   N6UAK9   A0A026WN51   A0A336LLT4   A0A195FPE6   A0A232F730   A0A195CU62   A0A067QU82   A0A1Y1MRB5   A0A151WLR0   E9IMN8   A0A151JN03   K7J2C2   A0A1B0CBY0   A0A158NTS7   A0A195BNL0   E2B0V9   A0A1Q3EWD3   A0A2P8ZDH5   B0XE78   A0A0L7QS76   A0A088A3L9   A0A182I5Y2   A0A182G5H4   A0A2A3E4P8   A0A182JX93   A0A182KV31   A0A182RW75   A0A1S4H4T0   A0A182Q685   Q16JS5   A0A1B6FIR5   A0A182WXW1   A0A1J1HY28   A0A1J1HTP8   A0A182MEZ1   A0A182VD21   A0A182NW93   A0A182Y9M7   A0A1B6IJ43   A0A182PD96   A0A182TML1   A0A0M9A6W1   A0A084WNL0   A0A240PKK3   W5JI71   A0A182FVG4   A0A182WE47   W8BNG5   A0A0M4ENP9   A0A1B6KKY1   A0A1B6CH52   W8CCC6   B4JE32   A0A034WMA8   B4LRC5   A0A1B6ML71   B4KJD8   A0A0L0BQQ9   A0A1I8NMG8   A0A1A9W027   A0A146KLX8   A0A146KWB7   T1IE01   A0A034WNM4   B3MP19   A0A3B0JYZ8   A0A1A9V9M2   A0A1B0A510   A0A1W4W9T0   B4Q887   B4HWB5   Q29ND4   B3N8J2   B4MTK6   B4NYN0   A0A1B0BJH6   A0A1A9XGV5   Q9VL76   A0A293LL36   J9JQD9   A0A131YVV4   T1JJG6   E0VF57  

Pubmed

19121390    26354079    22118469    23537049    18362917    19820115    + More
24508170    30249741    28648823    24845553    28004739    21282665    20075255    21347285    20798317    29403074    26483478    20966253    12364791    17510324    25244985    24438588    20920257    23761445    24495485    17994087    25348373    26108605    26823975    22936249    15632085    17550304    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26830274    20566863   

EMBL

BABH01030072    BABH01030073    ODYU01001058    SOQ36768.1    NWSH01001662    PCG70501.1    + More
KQ459602    KPI93484.1    RSAL01000115    RVE46916.1    AGBW02013545    OWR43229.1    KQ460615    KPJ13734.1    GBYB01008042    JAG77809.1    KB632385    ERL94334.1    KQ971321    EFA00172.2    KQ434783    KZC04705.1    APGK01042762    APGK01042763    APGK01042764    KB741007    ENN75652.1    KK107148    QOIP01000009    EZA57455.1    RLU18917.1    UFQT01000051    SSX19022.1    KQ981382    KYN42333.1    NNAY01000754    OXU26664.1    KQ977279    KYN04067.1    KK853424    KDR07693.1    GEZM01023698    JAV88224.1    KQ982959    KYQ48786.1    GL764229    EFZ18165.1    KQ978878    KYN27874.1    AAZX01001560    AJWK01005955    ADTU01026128    KQ976435    KYM87086.1    GL444701    EFN60662.1    GFDL01015435    JAV19610.1    PYGN01000089    PSN54557.1    DS232809    EDS45911.1    KQ414758    KOC61492.1    APCN01003537    JXUM01146081    KQ570104    KXJ68455.1    KZ288403    PBC26236.1    AAAB01008848    AXCN02001080    CH477994    EAT34536.1    GECZ01019684    JAS50085.1    CVRI01000021    CRK91438.1    CRK91439.1    AXCM01001811    GECU01020771    JAS86935.1    KQ435724    KOX78465.1    ATLV01024620    KE525353    KFB51804.1    ADMH02001177    ETN63826.1    GAMC01003930    JAC02626.1    CP012523    ALC38325.1    GEBQ01027882    JAT12095.1    GEDC01024462    JAS12836.1    GAMC01003931    JAC02625.1    CH916368    EDW03552.1    GAKP01003183    JAC55769.1    CH940649    EDW64595.2    GEBQ01003326    JAT36651.1    CH933807    EDW12513.1    JRES01001511    KNC22351.1    GDHC01021520    JAP97108.1    GDHC01017838    JAQ00791.1    ACPB03000243    GAKP01003182    JAC55770.1    CH902620    EDV31185.1    OUUW01000010    SPP85652.1    CM000361    CM002910    EDX04409.1    KMY89347.1    CH480818    EDW52310.1    CH379060    EAL33408.2    CH954177    EDV58415.1    CH963852    EDW75445.1    CM000157    EDW88694.1    JXJN01015395    AE014134    AAF52820.1    GFWV01002790    MAA27520.1    ABLF02031578    GEDV01005224    JAP83333.1    JH432114    DS235101    EEB12013.1   

Proteomes

UP000005204    UP000218220    UP000053268    UP000283053    UP000007151    UP000053240    + More
UP000030742    UP000007266    UP000076502    UP000019118    UP000053097    UP000279307    UP000078541    UP000215335    UP000078542    UP000027135    UP000075809    UP000078492    UP000002358    UP000092461    UP000005205    UP000078540    UP000000311    UP000245037    UP000002320    UP000053825    UP000005203    UP000075840    UP000069940    UP000249989    UP000242457    UP000075881    UP000075882    UP000075900    UP000075886    UP000008820    UP000076407    UP000183832    UP000075883    UP000075903    UP000075884    UP000076408    UP000075885    UP000075902    UP000053105    UP000030765    UP000075880    UP000000673    UP000069272    UP000075920    UP000092553    UP000001070    UP000008792    UP000009192    UP000037069    UP000095300    UP000091820    UP000015103    UP000007801    UP000268350    UP000078200    UP000092445    UP000192221    UP000000304    UP000001292    UP000001819    UP000008711    UP000007798    UP000002282    UP000092460    UP000092443    UP000000803    UP000007819    UP000009046   

PRIDE

H9JDF8    Q9VL76   

Pfam

PF00227   Proteasome        + More
PF00459   Inositol_P
PF00928   Adap_comp_sub
PF01217   Clat_adaptor_s

Interpro

IPR027417   P-loop_NTPase        + More
IPR003593   AAA+_ATPase       
IPR007694   DNA_helicase_DnaB-like_C       
IPR034154   TOPRIM_DnaG/twinkle       
IPR000243   Pept_T1A_subB       
IPR001353   Proteasome_sua/b       
IPR023333   Proteasome_suB-type       
IPR029055   Ntn_hydrolases_N       
IPR016050   Proteasome_bsu_CS       
IPR000760   Inositol_monophosphatase-like       
IPR020550   Inositol_monophosphatase_CS       
IPR009056   Cyt_c-like_dom       
IPR027059   Coatomer_dsu       
IPR028565   MHD       
IPR011012   Longin-like_dom_sf       
IPR036168   AP2_Mu_C_sf       
IPR022775   AP_mu_sigma_su       

SUPFAM

SSF52540   SSF52540        + More
SSF56235   SSF56235       
SSF49447   SSF49447       
SSF64356   SSF64356       

Gene 3D

3.60.20.10    

CDD

cd01029  TOPRIM_primases

ProteinModelPortal

H9JDF8   A0A2H1V7F5   A0A2A4JEX7   A0A194PL74   A0A437B8P4   A0A212EP18   + More
A0A194R8A4   A0A0C9R5I6   U4UJU4   D6WGI5   A0A154NYF6   N6UAK9   A0A026WN51   A0A336LLT4   A0A195FPE6   A0A232F730   A0A195CU62   A0A067QU82   A0A1Y1MRB5   A0A151WLR0   E9IMN8   A0A151JN03   K7J2C2   A0A1B0CBY0   A0A158NTS7   A0A195BNL0   E2B0V9   A0A1Q3EWD3   A0A2P8ZDH5   B0XE78   A0A0L7QS76   A0A088A3L9   A0A182I5Y2   A0A182G5H4   A0A2A3E4P8   A0A182JX93   A0A182KV31   A0A182RW75   A0A1S4H4T0   A0A182Q685   Q16JS5   A0A1B6FIR5   A0A182WXW1   A0A1J1HY28   A0A1J1HTP8   A0A182MEZ1   A0A182VD21   A0A182NW93   A0A182Y9M7   A0A1B6IJ43   A0A182PD96   A0A182TML1   A0A0M9A6W1   A0A084WNL0   A0A240PKK3   W5JI71   A0A182FVG4   A0A182WE47   W8BNG5   A0A0M4ENP9   A0A1B6KKY1   A0A1B6CH52   W8CCC6   B4JE32   A0A034WMA8   B4LRC5   A0A1B6ML71   B4KJD8   A0A0L0BQQ9   A0A1I8NMG8   A0A1A9W027   A0A146KLX8   A0A146KWB7   T1IE01   A0A034WNM4   B3MP19   A0A3B0JYZ8   A0A1A9V9M2   A0A1B0A510   A0A1W4W9T0   B4Q887   B4HWB5   Q29ND4   B3N8J2   B4MTK6   B4NYN0   A0A1B0BJH6   A0A1A9XGV5   Q9VL76   A0A293LL36   J9JQD9   A0A131YVV4   T1JJG6   E0VF57  

PDB

2Q6T     E-value=0.00287158,     Score=98

KEGG

101738164    K17680 twinkle protein [EC:3.6.4.12] | (RefSeq) twinkle protein, mitochondrial

GO

GO:0005524   GO:0003678   GO:0006260   GO:0016021   GO:0005634   GO:0051603   GO:0004298   GO:0005839   GO:0046854   GO:0003697   GO:0042645   GO:0006264   GO:0043139   GO:0046872   GO:0020037   GO:0009055   GO:0030126   GO:0015031   GO:0006890   GO:0051537   GO:0051260   GO:0003690   GO:0000002   GO:0005739   GO:0019205   GO:0016776   GO:0006811   GO:0016020   GO:0016876   GO:0043039  

PANTHER

PTHR10121  

Subcellular location

Nucleus  

Length:

637

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00813999999999997

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00144

outside

1  -  637

 

 

Pi

255.583936

Theta

195.132678

Tajima's D

0.255631

CLR

0.656276

CSRT

0.44212789360532

Interpretation

Uncertain