Silkworm Genome Informatics Database

Gene

KWMTBOMO09130 Validated by peptides from experiments

Pre Gene Modal

BGIBMGA007541

Annotation

PREDICTED:_serine/arginine-rich_splicing_factor_4-like_[Amyelois_transitella]

Location

Bomo_Chr15(+):11856431-11859385 View in EpiBrowser

Location in the cell

Nuclear Reliability : 4.012

CDS

ATGGCAGATTCTGTTAATATGTCACTAGATGAGATAATAAAAAAGAATCAACAAAATCGTGCAAGCAGATCTAGAGGACGAGGTATTAACCGAGGTAGAGGACCTGGACGAGGAGGTGGCAGAGGTCGCGGACGTGGTAATAATGGACGCGGTCGTCCCCAGTCTCGCACAGCTAATCGAGGGTCTAGACAAGGACGTTCACAGTCACGTGGGCAGAGAGGTCGTTCTCAATCTAGATCACGATCACAATCACAGGCTAGATCTCGCTCTCGTCAATCTCGCCGATCGAACTCTCGCAACAGATCCAGGTCTCGATCACAGCTTAGAGCTTTAACTCCGAAGGGCCGGGCAGGATTAGAAGATCTACAAACTGGAATGCCTCCTTTGACAAGAAGTGGCAGATCTTTTAGAGGTGGAGCTCAAAAAAGGTTGCAACGTGCATATTCTAATCCCGATTTAAGAGGAAATGTTCATAGTAGACTAGGTGTTACAACACGCAGAGGTGGCATCAATTTGCGCAGACCCCTCGCTATTGCTAAACGAGGAGTTTCTAAAAGAGGAAGAGGTTTAAGCACTGGAAATAGATATAGCAATGTGGGATTGAGATCTGACCAAATCTTAAAAGAACAGAGGCAGAATATGATGTTAAAAAATAACATGATAAGATCACAGACATTCACACGATCAAGAAATAACTCTTTCAGTTCAGCTTCACAGTTAACAGTTAGTGTGGCTAATGATTTTGCTCGGAAAAGACGTAACAGTGTTGGAAGCACTGGTTATCTGAATAGGCAAAGTTTGGCACAGCTGAATAATCAACTAGGAAATTATAATTCAAGAAAAGGTCCAGGTAGTGTTCGATCAATGACGTCTAACAAATCTAACCGATCTGGAGGGTCCAACACAAGCTCAACGAGGTCAAGGGGTAGAGGTAGAGGCAGAGGCACTGGTCGAGGAGTCGGAAGAAAATTTATAAACAAGCAAATATTAAATGCGAAATTACAGAAAGAAATAGCTGCTATTCAGGGAAAAACATATGGAGGAAATGCTACTGAAGCTCCTAGTGGTGTTAATTTCGCTCCCACACCAGTTGCTACAGGGCAATCACTTCATCAACGATTTGCTAGCACTTAA

Protein

MADSVNMSLDEIIKKNQQNRASRSRGRGINRGRGPGRGGGRGRGRGNNGRGRPQSRTANRGSRQGRSQSRGQRGRSQSRSRSQSQARSRSRQSRRSNSRNRSRSRSQLRALTPKGRAGLEDLQTGMPPLTRSGRSFRGGAQKRLQRAYSNPDLRGNVHSRLGVTTRRGGINLRRPLAIAKRGVSKRGRGLSTGNRYSNVGLRSDQILKEQRQNMMLKNNMIRSQTFTRSRNNSFSSASQLTVSVANDFARKRRNSVGSTGYLNRQSLAQLNNQLGNYNSRKGPGSVRSMTSNKSNRSGGSNTSSTRSRGRGRGRGTGRGVGRKFINKQILNAKLQKEIAAIQGKTYGGNATEAPSGVNFAPTPVATGQSLHQRFAST

Uniprot

A0A2H1V7H7 A0A2A4JFA7 A0A437B9Y5 A0A212EP11 A0A194RCU6 S4PDT1 + More
A0A194PJH9 A0A1E1WSS4 A0A0L7LNU3

Pubmed

22118469 26354079 23622113 26227816

EMBL

ODYU01001058 SOQ36771.1 NWSH01001662 PCG70499.1 RSAL01000110 RVE47153.1 + More
AGBW02013545 OWR43232.1 KQ460615 KPJ13731.1 GAIX01004822 JAA87738.1 KQ459602 KPI93482.1 GDQN01000955 JAT90099.1 JTDY01000455 KOB77100.1

Proteomes

UP000218220 UP000283053 UP000007151 UP000053240 UP000053268 UP000037510 + More

Pfam

PF00856 SET

Interpro

IPR007728 Pre-SET_dom + More
IPR001214 SET_dom

ProteinModelPortal

A0A2H1V7H7 A0A2A4JFA7 A0A437B9Y5 A0A212EP11 A0A194RCU6 S4PDT1 + More
A0A194PJH9 A0A1E1WSS4 A0A0L7LNU3

KEGG

101738655 no KO assigned | (RefSeq) serine/arginine-rich splicing factor 4

GO

GO:0018024 GO:0005694 GO:0008270 GO:0005634

Subcellular location

Chromosome
Nucleus

Length:

377

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

5e-05

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00887

outside

1 - 377

Pi

236.167844

Theta

204.798391

Tajima's D

0.247134

CLR

76.746596

CSRT

0.437378131093445

Interpretation

Uncertain

Source	Sequence	Identity	Evalue
26280517	TYEANSVFIADINNVR	96.55	3e-14
28467696	TYGEFPETVR	96.55	3e-14

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics