SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO09129
Pre Gene Modal
BGIBMGA007540
Annotation
PREDICTED:_GTPase-activating_protein_isoform_X1_[Bombyx_mori]
Location
Bomo_Chr15(+):11820791-11850463      View in EpiBrowser
Location in the cell
Nuclear   Reliability : 3.95
 

Sequence

CDS
ATGAAAGAGATAAACAGTTATGGATTTAACATGGCGGACGATACGCGTAAAGTGCGAATCGAGGAAAGATTGAAAATAAAGATTGGTGAAGCAAAGAACTTGCCAGGTCGCAATCATGGTGCGGCGTGTCATCGAGACATATACTGCGTGCTGTCGCTCGATCAGGAGGAAATATTTCGTACGTCCACCATGGAGAGAACACTTAACCCATTTTTCGGAGAAGAGTTCCAGTTTGAAGTTCCCAGACGATTTCGGTACTTATCAATATACGTGTTCGATCGTGACAAACATCTCAAACAGGACAAAGTGCTCGGAAAAGTTGCAATCAAACGAGAAGACCTGCACCGATATAACAACACAGACCACTGGTTCGCGCTGCGACCGGTCGACGCAGACTCAGAGGTGCAGGGGAAAGCTTACATCGAACTCACCCTCGAGGATTCGAGAAAGCGGTTACGGATGGAGCCGAAGCCCCCCGACCCGGACCCGGCCGCCGACAACTGCTCGACGAAGAGCAAACAGAACAATCTCGTGAGATTATCGGAGTATTGTAAGGAGAGCATGAGATTAGGATCTTGCTCGAGCTCGACGAGCAAGAAGCTGCTGAGCGTGGCGACAGAGCCCGCCATGTCTCTGTCGCGGTCGGAGAGCCTGAAGGATCGAGCACAGCTGACGTCACGCTCGAAGCCGCCCCTGCACGCGATGCCAGAGACCGACACCTCGCCCACTCCCACCGCCGCCGACTACTGGTCCGACCCGGAGCGGCACTGCGCGGCCAGGGTCGGCTACGACACCATACGCCTGCGAGTGCTCGAATGCTCCGAGCTCACCACCAAGAATGGACAGTGCGACCCCTTCGCTCTCGTCACGTTACTCTACTCGAACGGACGGAGAGTCGAGAAACGCACCAAACCCAAAAAGAAGACTGTCAACCCTCAATTTGATGAAATATTTTGTTTTGATCTCGTAATGGAAGCGGACCCAAAAGACAAAGACGGCTCCCAAACGGCCGGCTTAGCGTGCGAAGCTAGAGTGTCGGTGTGGCACGATGCGACCACGCCCATATTTCTTGGCGAAGTGCGACTTCAGCTGCGGCAACCGACGCCCTCGCCCTTGCGAGCTTGGTTCTTCCTGACGTCGCGCGCGGGCGGCGCCCTGTCCCGCGGCGCCACCCCGCCCGGCACGCGGCTGTCGGCGGCGGGCAGCGCCACGCTGGGCTCGCTGAGGCTGCTGCTGCAGTACACCGTCGACCACGTCTTCCCCAAGAACCACTACCGCAGCCTCGAGGAACTCTTCCTCCGAAGTGTGCATCAGAAGCCCACGACAGCGTCGGCGGTGTACATCCTGGGCGAGATTGTTGCGAGCAAGACGGACGCAGCCCAACCCCTAGTAAGACTGTTTATGCATCACGATCTCATCGTTCCCATCGTCAAAGAACTCGCCGATTCCGAAATATCGGCTCTTACTGATGCGACCACAATATTCAGAGGCAACACACTGGTGTCTAAAATGATGGACGAGGCGATGCGGCTCAGCGGCGCGTCTTACTTACGTGCCGTGCTGCGGCCCACTCTCGCTGCTGTGCTCGCAGAGAAGCGACCCTGCGAGATAGACCCGGCCAGGGTCAAACCCTCTGCCGCTATTACCGCTAATTTGACCAACTTGAAAGACTACGTTGAACGGGTGTTCGGTGCGATAACGTCGTCGTACGCGATGTGCCCGGCCACGATGTGCAGACTGTTCGACGCGCTGCGGCAATGTGCGGCGCGACACTTCCCCAGGAACGCGGAAGTGCGGTATTCTGTCGTCTCGGGATTCATTTTCTTGAGATTCTTTGCGCCCGCCATACTCGGACCCAGGCTGTTTGACCTCACAACAGAACAAATTGATCCGCAAACCAACAGAACCTTGACATTGATCTCTAAGACGATCCAGTCGCTGGGGAACTTGGTGAGCAGTAGGTCTGCGCAGCAGGTCTGTAAGGAGGAGTACATGGCTGAACTGTACAGAAGCTTCTGCACGCCAAGACATGTGCAAGCAATAAAGCAGTTTCTAGAAATAATATCAACGAGCACAGACACACAGAACAACAACGTACAAGAGACGCCTGTATTACTTAAAGAAGGGACGATGATCAAACGTTCTGAAGGAGTGCGGGGCGGCGGCTCGCCCCGACGTCGCTGGACTCGCGCTCCGCACGCGCACGCCAAGCGGAGGCACTTCCGACTCACGAGCGGCGAGCTGGTGTGGTCCCGGTGCGGGGCGCGCGGCGGCGCCCAGCGACTGTCGCTGTCGGGCGTGCTCGCCGTGGCGCCCGTGGACTGTCCGCCGGCCGGCGCGCCGCTCGGGACCAACAACATATTTCAGATAGTGCACCACGAGCGCGTGATGTTTGTCCAGGCGAGTAACTGCGTGGAGCGAGCCGAGTGGGTGCGCATGTTGCTGGCGCTGTGCCGCCGCTCGCCCGCCGCGCCGCTGCACACCGGCTACTACGCAGACACGCACTGGACCTGTTGCGGTCGCACGGAAGCAGTAGCGGAAGGTTGCGGTGGGACAGAGAACGGCATGGAGGCGGGGGACGGCACCGCGGCTGGCGTCGCTCTGGCGCTGCGGCTCGACCCGGCGCGGGACCTGCAGCGGCTGCACGCGCTGCTCGTCTCGCACGCCGCCGCACTCGACGACAGGCTACACCGACCTCAACTAACTACGAGTATAGAAGAACGTGAGGCAGAAGCGGCTACCCTACGAGAGTTGCAAGAGGCTATGTTTAACCTAGAGCACCAGCATCGAATATACCGACGGTCGCTAGCTCGAGAAACTAAATACGGAAGCAAACAAGCGCCAATAGGTGACGACAACTATTTACACTTAGCCGGAGCAGGAGGGGTGGACTGCGGCGGGTTGCCGTGGCGAAATTGGCGCAGCGACGCTGCGGTCGATCTCGACGGTAAGCCGCTGCGGCGCAACGACATGACTTCGAGCACAGAGTCGCTGCGCCGGCACGCCGACGAGCGCTCGTCCGGTAAGTCGACGCGCTCCGCCGGCAGCGGGTACCTCGCCATGTCCTGCTTGCGGCACGAGCCGGCCGACGACAGCGACGCGTCGGAGCGACCCGCTCGGCCGCCCAAACCGGCACGACTATCGCCTCCCCGCGCCTTCATCGACCCTCCTGCCGACTATGTGCCGGTTGAACCTCCGCCGCGATGTCGAGAGTACGAGCTGATGTCAGACTTCGTGAGTCGGGCCCGCGCTCTTGATGATGAGCCTCCTCCCGCGGTGCCGCCCCGCACCCGTCCCCGCCCCGTCGAGCCGCCGCGTCCCTCTAGCGCTGCCGACGCCGTCTCCACAGATGACAGTTTGATCGATGAACTACAACGCGGATCATACTGTGTGCTCAGAGTGTGCGAAGACGAATCTCCAGTACCGGAGAACTTTGGGGAGGAGGCTTCGGAGGCCGTCGACCAATCTAATGAACCGTTCCAACGTTCGAGCGTACAGCGGAAATCAAACCCGACCCGATCTCGGATCAGTCCGACTCGACCCCTCAAAACATCCAGTTCGACTTCTAACGTGCCGGAAGCAGCTCGCACCGCTTCCTCATCGCGGCTTTTCGCTGAACGTCTAACTCCCTTTTTTTTTAAACGGAAACAAAAACCTCTTGAAGAGGCGACGGGCAACTCCCGACGTGAAGAAAAAGACAACATGTTCGGGCGCTTGACTCCGCGTTTCGGTCAAGCGAGGCTGACGGGGCGCGGACGGTCGCTGGAGCTGACTGCGGAGGAGGCTCGTCCGCGGCGCATCGAGCGCTCCGCCACCACAGTCAACATCCCCCCGCGCCCCATGAACTCATCGATCGTCGCCAACTTGAAGTTCCTGAGTCTGCACAGGTACGGGCCGCAGGAGGCGAACCGAAAGTCCCCAGGCGAGGCGGAAGGTGCGTCGTGGCGGCCGCAGCATTCCGCCTCGCTGTTGGCCACAGCCTCTACCGACATCCGCCTTTAA
Protein
MKEINSYGFNMADDTRKVRIEERLKIKIGEAKNLPGRNHGAACHRDIYCVLSLDQEEIFRTSTMERTLNPFFGEEFQFEVPRRFRYLSIYVFDRDKHLKQDKVLGKVAIKREDLHRYNNTDHWFALRPVDADSEVQGKAYIELTLEDSRKRLRMEPKPPDPDPAADNCSTKSKQNNLVRLSEYCKESMRLGSCSSSTSKKLLSVATEPAMSLSRSESLKDRAQLTSRSKPPLHAMPETDTSPTPTAADYWSDPERHCAARVGYDTIRLRVLECSELTTKNGQCDPFALVTLLYSNGRRVEKRTKPKKKTVNPQFDEIFCFDLVMEADPKDKDGSQTAGLACEARVSVWHDATTPIFLGEVRLQLRQPTPSPLRAWFFLTSRAGGALSRGATPPGTRLSAAGSATLGSLRLLLQYTVDHVFPKNHYRSLEELFLRSVHQKPTTASAVYILGEIVASKTDAAQPLVRLFMHHDLIVPIVKELADSEISALTDATTIFRGNTLVSKMMDEAMRLSGASYLRAVLRPTLAAVLAEKRPCEIDPARVKPSAAITANLTNLKDYVERVFGAITSSYAMCPATMCRLFDALRQCAARHFPRNAEVRYSVVSGFIFLRFFAPAILGPRLFDLTTEQIDPQTNRTLTLISKTIQSLGNLVSSRSAQQVCKEEYMAELYRSFCTPRHVQAIKQFLEIISTSTDTQNNNVQETPVLLKEGTMIKRSEGVRGGGSPRRRWTRAPHAHAKRRHFRLTSGELVWSRCGARGGAQRLSLSGVLAVAPVDCPPAGAPLGTNNIFQIVHHERVMFVQASNCVERAEWVRMLLALCRRSPAAPLHTGYYADTHWTCCGRTEAVAEGCGGTENGMEAGDGTAAGVALALRLDPARDLQRLHALLVSHAAALDDRLHRPQLTTSIEEREAEAATLRELQEAMFNLEHQHRIYRRSLARETKYGSKQAPIGDDNYLHLAGAGGVDCGGLPWRNWRSDAAVDLDGKPLRRNDMTSSTESLRRHADERSSGKSTRSAGSGYLAMSCLRHEPADDSDASERPARPPKPARLSPPRAFIDPPADYVPVEPPPRCREYELMSDFVSRARALDDEPPPAVPPRTRPRPVEPPRPSSAADAVSTDDSLIDELQRGSYCVLRVCEDESPVPENFGEEASEAVDQSNEPFQRSSVQRKSNPTRSRISPTRPLKTSSSTSNVPEAARTASSSRLFAERLTPFFFKRKQKPLEEATGNSRREEKDNMFGRLTPRFGQARLTGRGRSLELTAEEARPRRIERSATTVNIPPRPMNSSIVANLKFLSLHRYGPQEANRKSPGEAEGASWRPQHSASLLATASTDIRL

Summary

Uniprot
H9JDE3   A0A212EP22   A0A2H1V8N7   A0A194PJ78   A0A0L0CI42   A0A1I8N0B6   + More
A0A1I8N0A6   A0A1A9UJE1   A0A1A9Z2P5   A0A1A9WTH6   A0A1B0ES62   A0A1B0GJZ0  
Pubmed
19121390    22118469    26354079    26108605    25315136   
EMBL
BABH01030074    BABH01030075    BABH01030076    BABH01030077    AGBW02013545    OWR43233.1    + More
ODYU01001058    SOQ36772.1    KQ459602    KPI93481.1    JRES01000364    KNC31906.1    CCAG010000568    AJWK01022464    AJWK01022465    AJWK01022466   
Proteomes
UP000005204    UP000007151    UP000053268    UP000037069    UP000095301    UP000078200    + More
UP000092445    UP000091820    UP000092444    UP000092461   
PRIDE
H9JDE3   
Pfam
PF00616   RasGAP        + More
PF00168   C2
PF00169   PH
PF00779   BTK
Interpro
IPR035892   C2_domain_sf        + More
IPR008936   Rho_GTPase_activation_prot       
IPR001562   Znf_Btk_motif       
IPR011993   PH-like_dom_sf       
IPR023152   RasGAP_CS       
IPR039360   Ras_GTPase       
IPR000008   C2_dom       
IPR001936   RasGAP_dom       
IPR001849   PH_domain       
SUPFAM
SSF48350   SSF48350       
Gene 3D
2.30.29.30     2.60.40.150    
ProteinModelPortal
H9JDE3   A0A212EP22   A0A2H1V8N7   A0A194PJ78   A0A0L0CI42   A0A1I8N0B6   + More
A0A1I8N0A6   A0A1A9UJE1   A0A1A9Z2P5   A0A1A9WTH6   A0A1B0ES62   A0A1B0GJZ0  
PDB
1WQ1     E-value=2.74186e-32,     Score=352

Ontologies

KEGG
101738793    K12380 Ras GTPase-activating protein 3 | (RefSeq) GTPase-activating protein
PATHWAY
04013    MAPK signaling pathway - fly - Bombyx mori (domestic silkworm)
GO
GO:0043087   GO:0035556   GO:0005096   GO:0007165   GO:0005515   GO:0019205   GO:0005739   GO:0016776   GO:0006811   GO:0016020   GO:0016876   GO:0043039  
PANTHER
PTHR10194  

Topology

Length:
1333
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.490410000000001
Exp number, first 60 AAs:
0
Total prob of N-in:
0.00090
outside
1  -  1333
 
 

Population Genetic Test Statistics

Pi
19.447571
Theta
163.09301
Tajima's D
0.469291
CLR
0.671651
CSRT
0.509624518774061
Interpretation
Uncertain
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