Silkworm Genome Informatics Database

Gene

KWMTBOMO09124

Annotation

PREDICTED:_E3_ubiquitin-protein_ligase_TRIP12_isoform_X1_[Bombyx_mori]

Location

Bomo_Chr15(+):11717911-11742985 View in EpiBrowser

Location in the cell

Nuclear Reliability : 4.794

CDS

ATGGCCGAGCAACACATCACACCGTCGTCGCACTCTGCACTCACGAGAGAGTCCAGCGGGTCTTCTCCTAGCAGGGTGGTGGGCGTGTACAGCCCCACGACCAGTAATCGGAAAGGCAAGAAACGAAAACGATCGCATCACCGATCTCTGTCCGGCAGGAAGAGTAGTTACCTGATCGACGACTACAAGAAAAGAGTTAAAATAGAGCCATCAGATTCAAGCGATACTGTTAGCAGCAAAACTTTTAGAAACGAGCCAGAAAAATTTGACAATACTACACCGCAAACTTCTTGTACGTATTTATTGCGAAACAGACATCACCGTGACCTCGGGCCGCCTACCTCAACGGTCGTCAGTGACAACACAGCGGTTTCATCGACCTGCGACACTGCTCATAATCAACCCGCCACTGAACAAAACAGTACTGCCGAAGGTAGAGTCATCTCGCCTCCGCCCTACAAAGACCTCCAAGAAGCGAGTTCATCGAAAGCACAGAACGCTGGGAGTAAACTGCTGATTGTACCACGTGACCTGCCATATCTACGTCAAACTAACGCTCGAAGGAGTATCGCAGCTGCGACGGGGGCTACTCTGGGAGCTTGCTTGACGCGGGGAGCCTCAGGCAATCAGCGCCAGAGACAGGATACGACTTCTAAAAGACAGGTACCATAA

Protein

MAEQHITPSSHSALTRESSGSSPSRVVGVYSPTTSNRKGKKRKRSHHRSLSGRKSSYLIDDYKKRVKIEPSDSSDTVSSKTFRNEPEKFDNTTPQTSCTYLLRNRHHRDLGPPTSTVVSDNTAVSSTCDTAHNQPATEQNSTAEGRVISPPPYKDLQEASSSKAQNAGSKLLIVPRDLPYLRQTNARRSIAAATGATLGACLTRGASGNQRQRQDTTSKRQVP

Catalytic Activity

S-ubiquitinyl-[E2 ubiquitin-conjugating enzyme]-L-cysteine + [acceptor protein]-L-lysine = [E2 ubiquitin-conjugating enzyme]-L-cysteine + N(6)-ubiquitinyl-[acceptor protein]-L-lysine.

Uniprot

A0A194PL69 A0A194R8Z6 S4PHN9 A0A437B0L8 A0A1E1WIU8 A0A2A4JZB4 + More
A0A212FCE6

Pubmed

26354079 23622113 22118469

EMBL

KQ459602 KPI93479.1 KQ460615 KPJ13725.1 GAIX01005730 JAA86830.1 + More
RSAL01000223 RVE43996.1 GDQN01004152 JAT86902.1 NWSH01000352 PCG77116.1 AGBW02009204 OWR51388.1

Proteomes

UP000053268 UP000053240 UP000283053 UP000218220 UP000007151

Pfam

PF02825 WWE + More
PF00632 HECT

Interpro

IPR016024   ARM-type_fold        + More
IPR035983   Hect_E3_ubiquitin_ligase
IPR004170   WWE-dom
IPR000569   HECT_dom
IPR018123   WWE-dom_subgr
IPR037197   WWE_dom_sf
IPR011989   ARM-like

SUPFAM

SSF56204   SSF56204        + More
SSF48371   SSF48371
SSF117839   SSF117839

Gene 3D

1.25.10.10 3.30.720.50

CDD

cd00078 HECTc

ProteinModelPortal

A0A194PL69 A0A194R8Z6 S4PHN9 A0A437B0L8 A0A1E1WIU8 A0A2A4JZB4 + More
A0A212FCE6

KEGG

101736311 K10590 E3 ubiquitin-protein ligase TRIP12 [EC:2.3.2.26] | (RefSeq) E3 ubiquitin-protein ligase TRIP1

GO

GO:0008270 GO:0016874 GO:0004842

Length:

223

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.38735

Exp number, first 60 AAs:

0

Total prob of N-in:

0.06420

outside

1 - 223

Pi

25.073098

Theta

20.58299

Tajima's D

-1.505157

CLR

255.53922

CSRT

0.0572971351432428

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics