Silkworm Genome Informatics Database

Gene

KWMTBOMO09118

Pre Gene Modal

BGIBMGA007535

Annotation

PREDICTED:_RNMT-activating_mini_protein_isoform_X2_[Amyelois_transitella]

Location

Bomo_Chr15(+):11550421-11554120 View in EpiBrowser

Location in the cell

Nuclear Reliability : 3.131

CDS

ATGGCATCCGAAACCTTATCTGAAGCTGACAAAGAATTTCTAGAAACATGTGAAGAGGAGTTAAAAGATAGATATACAGAAAATGATGAAGAATTTATGAAAGTATTTAATGCAGAGCCTTCCGTTCCTCCGATCGTAGATCCGTGGTGGGTACCCAATTCCAGAAGGAACGATCGCCGTCACAGCAGGCGTAGCCATCCGTATGAAAGACCTAGTAACAGGGGCGGAAGATATCAAAACAGAGATGATTCTGGACGTGGTTACAATGATTATAGCAGAGAGCAAGGAGGGTACGGCAGTCAACGAAGAAGATATTATTAG

Protein

MASETLSEADKEFLETCEEELKDRYTENDEEFMKVFNAEPSVPPIVDPWWVPNSRRNDRRHSRRSHPYERPSNRGGRYQNRDDSGRGYNDYSREQGGYGSQRRRYY

Uniprot

A0A2A4JKN1 A0A1E1WTB5 A0A194PQR3 A0A212FCM5 A0A194R7B5 S4PWX9 + More
A0A2P8ZCZ9 V5FXD4 W5J3L4 V5HNQ2

Pubmed

26354079 22118469 23622113 29403074 20920257 23761445 + More
25765539

EMBL

NWSH01001151 PCG72379.1 GDQN01009540 GDQN01000779 JAT81514.1 JAT90275.1 + More
KQ459602 KPI93470.1 AGBW02009176 OWR51467.1 KQ460615 KPJ13718.1 GAIX01006008 JAA86552.1 PYGN01000097 PSN54379.1 GALX01006141 JAB62325.1 ADMH02002109 ETN58947.1 GANP01007221 JAB77247.1

Proteomes

UP000218220 UP000053268 UP000007151 UP000053240 UP000245037 UP000000673 + More

Pfam

PF15320 RAM

Interpro

IPR028271   RAMAC        + More
IPR013087   Znf_C2H2_type
IPR036236   Znf_C2H2_sf
IPR001214   SET_dom

SUPFAM

SSF57667 SSF57667

ProteinModelPortal

A0A2A4JKN1 A0A1E1WTB5 A0A194PQR3 A0A212FCM5 A0A194R7B5 S4PWX9 + More
A0A2P8ZCZ9 V5FXD4 W5J3L4 V5HNQ2

KEGG

101740047 K18708 RNMT-activating mini protein | (RefSeq) protein cereblon homolog

GO

GO:0106005 GO:0005845 GO:0003723 GO:0032259 GO:0019205 GO:0005739 GO:0016776 GO:0006811 GO:0016020 GO:0016876 GO:0043039

Length:

106

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00179

Exp number, first 60 AAs:

0.00179

Total prob of N-in:

0.33435

outside

1 - 106

Pi

138.962843

Theta

165.718281

Tajima's D

-1.375617

CLR

40.040598

CSRT

0.0766961651917404

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics