Silkworm Genome Informatics Database

Gene

KWMTBOMO09092

Pre Gene Modal

BGIBMGA007576

Annotation

E3_ubiquitin-protein_ligase_RNF168_[Papilio_xuthus]

Location

Bomo_Chr15(-):11127146-11132248 View in EpiBrowser

Location in the cell

Nuclear Reliability : 4.76

CDS

ATGGCGGCCAAGTCAAAGAAGCGGCTGTCTAAAATTGATAATAAATTGTTAAAATTAGATAAATTAGAATTAAAAGATCTGATTTGCTCCATTTGTCAATCAATATTAGTAGAACCAGTGACATTACCTTGTTTTCATGATTTTTGTCATCGTTGTTTCAATGGAAGTGTTGAAAATAATGCCTTGTGCTGTCCTCTCTGTCGATTAAGAATTGGATCCTGGCTCAGGACGGCCACAAAGCGAAAAACTTTAGTAAATCTTGAGTTGTGGAGCTTCATTCAAAATAAATTTCCTCAAGAAATAGATATTAAATCAAGAGGCGATGACATCGTTCTTCCAGAAGAAAAACCTGTAACCAGGCTAAGTTTGCCTGGTGAAATCAGATTAGAATATGAAGAGGAACTTCAGCGCCTTAAAGCAGAGAGAGAACGGCTTGAAGAAAAACACATTGAGGAAACTGAGTTACTGATTAAAAAAATTCAACAAGAAGAAGAAGAAGCACATAAGAAATATATTGAAAATCTAAAACAAGATGAAGTTTTGGCCTTGAAAATCCAGAAAGAGCACATGGATAATGCAGCTTCATCTACAAATGCACACACAAGGCAAAATCAAAGAGAGGCAATGAAATTCAAACTGAAAACAGCAAAAATTGATGGTTACCTATCTAAAATGAAAACTACCATCATTAAAGAACCTGCAACAACAGCCAGTAGTTCATGCAATAATTTAACACCAGCAACGACCAGTGAAAAAAAAGTAACATCCAGGTCACCGGAATTAATTTCTTCTTATGGTAAATTAATCAAAGATTTCATAGACAAGAAAGTGTGGAACAAAGAAAATGGAGAGAAACATAAGGATAAAGTCAGTGAGAAAGCATTAGGTGATACAGTAAAACCAAAGTTTAAAAATTCTTTGCTTGTATCTTTACCTCTGCCTTGCACTGGAATTCGTCAAAAGGTCAATGCTTCTGAAAATCACAGGAGTAAAGAGACTGGAAGTGTGGATTCAATGCAACAAGAATTATGTTATTTCAAACCGATTGAAGGAACTAAACCAACTAGTGGGAGAAAAGGATTTCCACTGCGGATACCGTGCCGACGAATCGACAAAGAAATCGCGCCATTGAAGGAAAATGCCCCTACTCGTGCACAATACCTGGAAGGACTGTGCCGACTCCGAAACGTTTCACTATCAAAAAATTTACCATCTGCTTTTGTTATTACCCTAAACTTATTAGCTGTAAAAAAGGGCAATATTGTGAAACGTGAAACTGCAAGACAAGAAACAACAACAAGATTGAAAGAGAAGAGGACAACATGCCGAAATACAACTGAACCGGTACTAAGAAGATATCCTAGTCGTAATAAAAATAATATACATATTGACGGTATTTCTAAATTTAATAACGAGACAAATCTGCGACGAACTAGATCAATGGGAAGTATAAATGACGAAGAAACCGTGTCAACGCCCAAGAAAGCAAAAATTAACCAGAGGAAGGTGTGCTCAGAACGAAAACCACATTTGAGAAGTGATTCGAAAAAGATTAATTGTGGTAACTTGTCCAGCACTTCTCCTTGTGACTCAAAGCCTATTAATAATAATAAAATCAATTTAGTTGTTAAAAATTTGTCTAGTCCTCTACAAAACTGTGATGTTAAGCATATTTTGCAAGAACAATTGAGGATCGAGGAAATAATTGAACAAGAGAAGAGTGATTTTGAACTTGCCTGTAAGATAGAAGCAGAATGGAACGGAAGGAGACAGCCGCGGCGAGCTGCCATCAAGCGACAAGTTTCGATTAACTATGCGCTGAGGCCAGCAAAAAAATTAAAAGTGTAA

Protein

MAAKSKKRLSKIDNKLLKLDKLELKDLICSICQSILVEPVTLPCFHDFCHRCFNGSVENNALCCPLCRLRIGSWLRTATKRKTLVNLELWSFIQNKFPQEIDIKSRGDDIVLPEEKPVTRLSLPGEIRLEYEEELQRLKAERERLEEKHIEETELLIKKIQQEEEEAHKKYIENLKQDEVLALKIQKEHMDNAASSTNAHTRQNQREAMKFKLKTAKIDGYLSKMKTTIIKEPATTASSSCNNLTPATTSEKKVTSRSPELISSYGKLIKDFIDKKVWNKENGEKHKDKVSEKALGDTVKPKFKNSLLVSLPLPCTGIRQKVNASENHRSKETGSVDSMQQELCYFKPIEGTKPTSGRKGFPLRIPCRRIDKEIAPLKENAPTRAQYLEGLCRLRNVSLSKNLPSAFVITLNLLAVKKGNIVKRETARQETTTRLKEKRTTCRNTTEPVLRRYPSRNKNNIHIDGISKFNNETNLRRTRSMGSINDEETVSTPKKAKINQRKVCSERKPHLRSDSKKINCGNLSSTSPCDSKPINNNKINLVVKNLSSPLQNCDVKHILQEQLRIEEIIEQEKSDFELACKIEAEWNGRRQPRRAAIKRQVSINYALRPAKKLKV

Uniprot

H9JDH9 A0A2H1WT18 A0A437BRJ6 A0A194R859 A0A194PL33 A0A212F050 + More
A0A1E1VXA5 A0A1E1WRC7

Pubmed

19121390 26354079 22118469

EMBL

BABH01030125 ODYU01010804 SOQ56132.1 RSAL01000017 RVE52935.1 KQ460615 + More
KPJ13689.1 KQ459602 KPI93439.1 AGBW02011160 OWR47128.1 GDQN01011722 JAT79332.1 GDQN01001693 JAT89361.1

Proteomes

UP000005204 UP000283053 UP000053240 UP000053268 UP000007151

PRIDE

H9JDH9

Pfam

PF00097 zf-C3HC4

Interpro

IPR018957   Znf_C3HC4_RING-type        + More
IPR013083   Znf_RING/FYVE/PHD
IPR001841   Znf_RING

Gene 3D

3.30.40.10

ProteinModelPortal

H9JDH9 A0A2H1WT18 A0A437BRJ6 A0A194R859 A0A194PL33 A0A212F050 + More
A0A1E1VXA5 A0A1E1WRC7

PDB

3L11 E-value=5.29003e-21, Score=251

KEGG

101737677 K20779 E3 ubiquitin-protein ligase RNF168 [EC:2.3.2.31] | (RefSeq) E3 ubiquitin-protein ligase RNF16

GO

GO:0046872 GO:0016874 GO:0005515 GO:0008270 GO:0006414 GO:0003924 GO:0010181 GO:0006811 GO:0016020 GO:0016876 GO:0043039

Length:

615

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.02646

Exp number, first 60 AAs:

0.00531

Total prob of N-in:

0.00310

outside

1 - 615

Pi

187.588011

Theta

163.293189

Tajima's D

-1.314981

CLR

1006.887547

CSRT

0.0847957602119894

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics