Silkworm Genome Informatics Database

Gene

KWMTBOMO09091 Validated by peptides from experiments

Pre Gene Modal

BGIBMGA007518

Annotation

hypothetical_protein_KGM_10405_[Danaus_plexippus]

Location

Bomo_Chr15(+):11120299-11124887 View in EpiBrowser

Location in the cell

Cytoplasmic Reliability : 3.48

CDS

ATGGGCAGCAAAAGTGGATATAATGAAGATTTATTCGAATACGTAAAAGTCAGTGAAGATGAAGACGAAAATAATGCTGTGGAGATACCTTGTGAAGTAGACGGAACTCTTTTACTATCTACGCTTGTAGCTCAATTTCCCGGTACTTGCGGATTAAAATATCGACATCCAGATTCTAAATCAGTTCGAGGTATTCGTCTAAGCGACGGGAAATTACATCCCCCAAGTGAAGTAGGCTGGGGTAAAAACTTATACGTTTGCGTTTTTCCGAAAGAAAATAAACGTAAAATGGAGGACGTCTCGACAGATAATTCGGCTGCCAAAACTAAACGTTTGGAAAAAAAGTTAACTTGTTCAGACTTAATTTGCTTGGGATTACCGTGGAAGTCAACAGAAGAATCTATTAAACAATATTTTGAACAATTTGGAGAAGTCGTAATGGTTCAACTAAAAAAAGATAAAAGTGGCTGTTTTAAAGGATTTGGTTTCATCCGTTTTGCTACTTATGCCTCACAAATGAGAGCACTTGCTCAAAGACATAACATAGACGGCCGTTGGGTAGATGTCCGAATTCCTAATTCCAAGGAAGGAGTAGTGCCCCAAATGCCATGTAAAGTATTTGTTGGTAGATGTACAGAAGATATAACAGCTGAAGATCTTCGTGACTATTTTTCAAAGTTTGGTGAAGTTACTGATGTTTTTGTGCCTCGTCCATTTCGTGCATTTGGTTTTGTCACGTTTTTGGACCCAGAGGTAGCTCAGAGTCTTTGTGGAGAGGATCATGTAATAAAAGGTGCCTCTGTTTCTGTGTCTAGTGCTGCTCCAAAAGTCAAAACAAAATCTAACAGCAACTGGAAGGAAGACTCATACAGTCATAACAATTGGGAAGAGGTCCTGGAAATACTGGACCTAACTGGCAAGGGCCCTCTCATGGCAATTCAGGCAAAAATTGGAATAGTAACCAAAATTGGGGATCAAATGGCCCTCCTCCTTCATGGAATCAAGGGAACCAAGGAGGAAGTCAACAAGGTTGGAACGGAGGTGGAGGAGGTGGAAAAAATGGCAATTGGAATCAAAGTACTGGCTGGTCAGGCCCAGGAAACTGGAATAATAATGGTAATGGGAGTTCTGGGTCAGGGAATGGATGGAACAACAATAAGCCACAAACATGAGCCAGGCGTTAAGCGATTGCCACAGCTAATAAGTGGATTTCTCTCTCAAACCCTACAACGGTAA

Protein

MGSKSGYNEDLFEYVKVSEDEDENNAVEIPCEVDGTLLLSTLVAQFPGTCGLKYRHPDSKSVRGIRLSDGKLHPPSEVGWGKNLYVCVFPKENKRKMEDVSTDNSAAKTKRLEKKLTCSDLICLGLPWKSTEESIKQYFEQFGEVVMVQLKKDKSGCFKGFGFIRFATYASQMRALAQRHNIDGRWVDVRIPNSKEGVVPQMPCKVFVGRCTEDITAEDLRDYFSKFGEVTDVFVPRPFRAFGFVTFLDPEVAQSLCGEDHVIKGASVSVSSAAPKVKTKSNSNWKEDSYSHNNWEEVLEILDLTGKGPLMAIQAKIGIVTKIGDQMALLLHGIKGTKEEVNKVGTEVEEVEKMAIGIKVLAGQAQETGIIMVMGVLGQGMDGTTISHKHEPGVKRLPQLISGFLSQTLQR

Uniprot

H9JDC1 A0A212F056 A0A2H1WSU8 S4NNQ6 I4DL40 A0A194PKA0 + More
A0A0L7KS85

Pubmed

19121390 22118469 23622113 22651552 26354079 26227816 + More

EMBL

BABH01030125 AGBW02011160 OWR47129.1 ODYU01010804 SOQ56131.1 GAIX01013836 + More
JAA78724.1 AK402008 BAM18630.1 KQ459602 KPI93438.1 JTDY01006562 KOB65889.1

Proteomes

UP000005204 UP000007151 UP000053268 UP000037510

PRIDE

H9JDC1

Pfam

PF18694 TDP43_N + More
PF00076 RRM_1

Interpro

IPR012677   Nucleotide-bd_a/b_plait_sf        + More
IPR000504   RRM_dom
IPR035979   RBD_domain_sf
IPR041105   TDP43_N

SUPFAM

SSF54928 SSF54928

Gene 3D

3.30.70.330

ProteinModelPortal

H9JDC1 A0A212F056 A0A2H1WSU8 S4NNQ6 I4DL40 A0A194PKA0 + More
A0A0L7KS85

PDB

4BS2 E-value=3.23486e-52, Score=518

KEGG

101743353 no KO assigned | (RefSeq) TAR DNA-binding protein 43 pseudogene

GO

GO:0003723 GO:0003677 GO:0000166 GO:0003676 GO:0030246 GO:0006414 GO:0003924 GO:0010181 GO:0006811 GO:0016020 GO:0016876 GO:0043039

Length:

411

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.03272

Exp number, first 60 AAs:

0.00121

Total prob of N-in:

0.00988

outside

1 - 411

Pi

21.295431

Theta

20.318924

Tajima's D

0.084713

CLR

193.825081

CSRT

0.394430278486076

Interpretation

Uncertain

Source	Sequence	Identity	Evalue
26822097	GASVSVSSAAPK	100.00	2e-04
26280517	FGDSASDKPGPNPATTNVAEDVFMQFITSK	100.00	2e-04
25044914	FGEVMAR	100.00	2e-04

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics