SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO09073
Pre Gene Modal
BGIBMGA007581
Annotation
PREDICTED:_protein_ECT2_isoform_X3_[Bombyx_mori]
Location
Bomo_Chr15(-):10859731-10900984      View in EpiBrowser
Location in the cell
Nuclear   Reliability : 4.259
 

Sequence

CDS
ATGGACGAATTGTCTAAGGGCATGACACAAACAGGAAGCGCCGCTACAACTGACAAAATTCAAGAAAATGATGGCTCGTCGAATCCGGTAGTGTATGTGAATGGTTCATGCTTGGAATGCGAAAGGGTACGTGCCGCCTGTGAACGGCTCGGCATCGTGGAGGTGGCACCGGAGCCCGATGCATTGCCGACACTGCTGCAACCGACTGCACCGCCATGTTACCTCGTCACATCTCCCTTCGAAGGCGAACTCTTCGACACAGCACACAGAGCCAAATACAGAGTGTTGGGACCGACTGCAGTTCTGCAACTGGCGGAACGCGACGAGCCTCCTCCAGCAAATGCACGGCCGCTCTACTCGTTGGCCATGCGGGGCGCCGTCATATGTTTCTCCGGATTTAGGAAAAAGGATGAACTTACGTACCTGATAACGTTAATACACTACATGGGCGGCTCGATCCGTAAGGACATGTCGAGCAAGGTGACGCACCTGATCGCGGCCGCAGCTACGGGCGAGAAGTACAGGTACGCGTCCGGGTTCGGCCTGCCCGTGCTCGCGCGCTCCTGGGTCGACGCGTGCTGGGAACGGCGAGACGACCCCGCCTGTCTCGCGACCGACGATGTCATAATTAAAGAACATAAATTGAAAGTTTTCGCCGGAGCGAGGGTGTGCTTCGTCGGCTTCCCGGAGGATGAGACCCAACACATGGGCGAGGTGCTCGCCAGCAACGGAGGCGCCGTCTGTCCACTCGACGATCCGGACTGTACGCACGTCGTTATGGCCAATGGGGAGACTTTCGGTCGTTCGCTTATCCTATCGCCTCACCAGACCACTCCGAGCTCCTCTTCTAAACCATCCCGATCGACTCCCAATCGTTCTCAGTCCACTCCAAAGACTTCGTTATACCGTAGACTATCGGCACGGCTGTCAGGATGCCGCGCTAGTCCTGTCAAACATGCAGCCGATACTAGCCATGAAGTTCTCCACGATGAAAAGGACAAACGCATACAGCGAGCTTTAAGTGAAATTCGAGAAAAACAATACACATCCAAAGATAAATTAGCTGATAGTTTAGTAGGGAAATCGTATACAGACGATTTTTATTCTTATAAAGAAGAAAAAAATAGTTCACACGGTGAACGTATAGAGTACCGAAAACATAGTAACGGCGGCAAAGAAAATAAAGATTCCCAAACGAGCCACGGATCTTTGAAATGTAACGTAAAAGATAAACGAGAAGTATTTCGTAACAAATCTATGAATGTATTTAATCTAGTCGATTGTTTCAACGAAGTTGGCTCTCTCCATTCTTCTCTCACTAAGAGCTTATGTGATCTTGATCCTAAAGGTGAATTCTTGTTGCCGACCCCCACTCGAAATAAAGAATTGCAACAATCTACGACCACTATTTCATCTGGTAAAAAAAGAAGTCGCAATTCGACTGATACAAATTTTCAAGAAAGCACCGTCGATGTGAATTTATCTCCTGATAAATGTGATGAGAATAATTGTAAATCCATAAAAAGGTTGAAAATTAAAGATTCCTTCAAATTTAAAACTAAACCAACGATTTTCAAAAAATCTAAAAGAGAATCTCTCACCAAACCCACAGGCGACATAATAGTGGAGCCAGTAAGTCCAGAAAACGTTAAACCAACAGATCCAGCTGGGGAATTCATCGCTTCTACCTCTTCTCCCATCAGATCGGAAGACGATAACGCATCTATATGCTCTATGAATACGATTAAACAATCGGGCTTTTTTGATATATCGTTCGCATCGTTAAGAAGTTCTAAAACAGCAAAGTCTGCTTCTAAATTAAGACGAAGCGTCAAATCATTTACCGCGTCGTTTAGAAGTGAACGTAAAAAGAAATACGAGAAGAGAGCCGAACGCAATACAGTCGAAGTGGATCCGTCTCACTTGCCTTCAAATTTGAAAAATGTTTCAACACCGAAAAGAGAACTGGACGAAATGAAGTTTGATATTTCTCCCGTGCAAGTCGATACAGTAGACAGTACTGAAATGACACCACCAGTCAAACGTGCAGATCTTGATGAACTGGATGATTCTGCTGTATTCAAAACTCCTCAGAGTGTGTGGTTGCGCGCTCAGCGTCATTCTATTTGCGGCAGCATAGAGTTGCGGAAAGCCGCAGGTCCCCCCTCCCCCAGCGTCCGTCCCTCTCCCACCCCCGCTTCCGTCCCCGCGCACCCGTTCGTTCTCGAGCAGCCGCCGCCCGCCTCGACGCCTCCCATCCAAGACGCCCGCGCCATTTCGCAATGCCATGGAATATCGCTACCGGTGGTCGACGAACACAACACCGTGGTGGCTCCCGAGTGCTCATCGCGTGTTCACGTCGTCAAGGCCGAATGGTTTTGGGCATCCGTGCAAAATGAAGAGGCACAAGATGAGGGAGATTTTCTTTTCAAAGATTACCTGGAGGAGATGTCGCGGCGGTCGTCTGTAGGTGGTGCGGGCGCCGGTGTGGCGACGCCGGGCGCGGCGGGAGCGGCGGGCGGCGGGGAGGAGGCGGGCGGCGCGTGCACGCCCGCGCACCTACAGCGGCTGCGAAAACGGAAACTACGCGGTGGCGACTCCGCACTGCACAAACGTCGCTCCTCGGTGGGCGATGCTGTGCTGCTCAACCTTTCTAGGACTCTGCTCGACTGTACAACTTCCCCTGATGGGAAACCGATCCTTGAAGAATCCGAAGTTTCCGACAATGTGGTCCGAAAATTGATGTCTCCGCGACAACAAGTCTTTATGGAGTTGCTCCAGACAGAGTCGAATTATGTTGGAATATTACATACAATAGTTACGATGTTCAAGCAACCCTTAGAAGAAATGGCTGAAGAAGACAATAGTAACGGGAAAAATCAAGCACTGCTCAATAATACAGAATTAAAAATAATATTTGGAAATTTACCACCGATCTATGAACTTCATCAGCGCATGTTAGAAGAACTTCGGTACACGCAAGCACATTGGAGCGAAGAGAAGAGCATAGGTCAGCTCGTGCTGCAGTACACACCCGACATGGTGAAGGCGTACCCACCGTTTGTCAACTTCTTCGAGAACACAAAAGAAATGCTGCAACAATGCGACCGTGAGAACCCAAGATTTCATGCATTCCTGAAAATATGTCAAACAAAACCAGAGTGTGGTAGACAAAGTTTACAGGAGCTACTTATAAGACCAGTGCAGCGATTACCTAGCATAAGCTTACTACTTGATGATATACTGAAGCACACCCACAAGTCGAACCCGGACCACGCGGCGCTGACCAAGGCGCTGGCCGGGCTGCGCGAGGTCATGTCGCACATCAACGAGGACAAGCGCAAGACCGAGGGGCAGCTGCAGATGTTCGACATATACAACGAAATCGACCAGTGCCCGGCTCATCTTGTTTCGTCGCATCGGTCTTTCGTTTCGCGGTGCGAAGTCGTAGAACTATCTAAAGAACTCTCAGGAAGAGGGGATCACCTAGTATTGTTTTTGTTTACTGATACTATGGAAGTTTGCAAGAAGAGGTCTAAAGCTTTCAATAGCAAAAGTCCAACGAATGGCACGGGCACCATGAGGATAGGGTCAAGCAAACCCTACAGACATATATCCTTAATGCCACTCAGTACTGTGAAGCGAGTTGTCGACATTAGAGAAGCTGAAGATTGTCACAATGTGTTCGCATTAATGTGCCGGAATAACCAAGAACTCAAGGAAAAGCTGTATTCGTTTATGATTACTGATGAAACGGTAGACAAGTCACATTTCCTGAGGCAACTCTGCAGACAAATGGCGAACACCGTTTGTAAGGCGGATGCTGACAAATTCCTGGCATGCCTAGAGTCGCATCAAATGGACATCGACACTAGTGACCTCGCCCTTAGCACGCTATCCAAAGTCTCGAAATTCGCAGCTAGAACCAGAATAAAGGTCGGGCGTGCTCTATCGTTCAACAAGACCCCTTCGAAACTGAAGCGAGCCATGTCGTCGATGATATCGCCGTTCGGCTCGACGTCCAACCTGACGCCCGCGTCGCAGCTCGCGCAGATGAGACTGGCCAGCTGCAACAACATTAACGAGATGGGCGGGTGCTCGGGCGGCGCGGCGGGCGCGTCGGGCGGCGTGCTGGTGGCGCCGCTGTCGGTGCAGCCCACGCGCAAGGCCGCGCCCGGCGCCGCGCACGCGCTGCGTCGGTTCTGA
Protein
MDELSKGMTQTGSAATTDKIQENDGSSNPVVYVNGSCLECERVRAACERLGIVEVAPEPDALPTLLQPTAPPCYLVTSPFEGELFDTAHRAKYRVLGPTAVLQLAERDEPPPANARPLYSLAMRGAVICFSGFRKKDELTYLITLIHYMGGSIRKDMSSKVTHLIAAAATGEKYRYASGFGLPVLARSWVDACWERRDDPACLATDDVIIKEHKLKVFAGARVCFVGFPEDETQHMGEVLASNGGAVCPLDDPDCTHVVMANGETFGRSLILSPHQTTPSSSSKPSRSTPNRSQSTPKTSLYRRLSARLSGCRASPVKHAADTSHEVLHDEKDKRIQRALSEIREKQYTSKDKLADSLVGKSYTDDFYSYKEEKNSSHGERIEYRKHSNGGKENKDSQTSHGSLKCNVKDKREVFRNKSMNVFNLVDCFNEVGSLHSSLTKSLCDLDPKGEFLLPTPTRNKELQQSTTTISSGKKRSRNSTDTNFQESTVDVNLSPDKCDENNCKSIKRLKIKDSFKFKTKPTIFKKSKRESLTKPTGDIIVEPVSPENVKPTDPAGEFIASTSSPIRSEDDNASICSMNTIKQSGFFDISFASLRSSKTAKSASKLRRSVKSFTASFRSERKKKYEKRAERNTVEVDPSHLPSNLKNVSTPKRELDEMKFDISPVQVDTVDSTEMTPPVKRADLDELDDSAVFKTPQSVWLRAQRHSICGSIELRKAAGPPSPSVRPSPTPASVPAHPFVLEQPPPASTPPIQDARAISQCHGISLPVVDEHNTVVAPECSSRVHVVKAEWFWASVQNEEAQDEGDFLFKDYLEEMSRRSSVGGAGAGVATPGAAGAAGGGEEAGGACTPAHLQRLRKRKLRGGDSALHKRRSSVGDAVLLNLSRTLLDCTTSPDGKPILEESEVSDNVVRKLMSPRQQVFMELLQTESNYVGILHTIVTMFKQPLEEMAEEDNSNGKNQALLNNTELKIIFGNLPPIYELHQRMLEELRYTQAHWSEEKSIGQLVLQYTPDMVKAYPPFVNFFENTKEMLQQCDRENPRFHAFLKICQTKPECGRQSLQELLIRPVQRLPSISLLLDDILKHTHKSNPDHAALTKALAGLREVMSHINEDKRKTEGQLQMFDIYNEIDQCPAHLVSSHRSFVSRCEVVELSKELSGRGDHLVLFLFTDTMEVCKKRSKAFNSKSPTNGTGTMRIGSSKPYRHISLMPLSTVKRVVDIREAEDCHNVFALMCRNNQELKEKLYSFMITDETVDKSHFLRQLCRQMANTVCKADADKFLACLESHQMDIDTSDLALSTLSKVSKFAARTRIKVGRALSFNKTPSKLKRAMSSMISPFGSTSNLTPASQLAQMRLASCNNINEMGGCSGGAAGASGGVLVAPLSVQPTRKAAPGAAHALRRF

Summary

Uniprot
A0A2H1WDB4   A0A437BKJ4   A0A194RCN8   A0A194PL14   A0A212FIS4  
Pubmed
26354079    22118469   
EMBL
ODYU01007888    SOQ51053.1    RSAL01000040    RVE50984.1    KQ460615    KPJ13671.1    + More
KQ459602    KPI93419.1    AGBW02008329    OWR53648.1   
Proteomes
UP000283053    UP000053240    UP000053268    UP000007151   
Pfam
PF12738   PTCB-BRCT        + More
PF00621   RhoGEF
Interpro
IPR035899   DBL_dom_sf        + More
IPR001357   BRCT_dom       
IPR000219   DH-domain       
IPR036420   BRCT_dom_sf       
IPR026817   Ect2       
IPR001331   GDS_CDC24_CS       
IPR011993   PH-like_dom_sf       
SUPFAM
SSF52113   SSF52113        + More
SSF48065   SSF48065       
Gene 3D
1.20.900.10     2.30.29.30     3.40.50.10190    
CDD
cd00160  RhoGEF
 cd00027  BRCT
ProteinModelPortal
A0A2H1WDB4   A0A437BKJ4   A0A194RCN8   A0A194PL14   A0A212FIS4  
PDB
4N40     E-value=2.32527e-40,     Score=421

Ontologies

KEGG
101738201    K20704 protein ECT2 | (RefSeq) protein ECT2
GO
GO:0005089   GO:0005096   GO:2000431   GO:0035556   GO:0035023   GO:0005634   GO:0005737   GO:0005085   GO:0005488   GO:0016579   GO:0010181   GO:0006811   GO:0016020   GO:0016876   GO:0043039  
PANTHER
PTHR16777  

Topology

Length:
1401
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.06582
Exp number, first 60 AAs:
0
Total prob of N-in:
0.00019
outside
1  -  1401
 
 

Population Genetic Test Statistics

Pi
295.263731
Theta
204.034804
Tajima's D
1.664573
CLR
0.15137
CSRT
0.817609119544023
Interpretation
Uncertain
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