Silkworm Genome Informatics Database

Gene

KWMTBOMO09071

Annotation

PREDICTED:_sodium-dependent_noradrenaline_transporter-like_isoform_X1_[Bombyx_mori]

Location

Bomo_Chr15(+):10851695-10852319 View in EpiBrowser

Location in the cell

PlasmaMembrane Reliability : 3.632

CDS

ATGGACAATGCGATCGGTGGAGTTACAACCCACAGACGCTTGAAAGGTCGTCGACGGTTGAGACTCGGTTCTTTAGCAATAGGATGTCTCCTCGCCATGCATTGCCGCGTCACTGCTTCAGCGGTCACTGGAGGCTTGATAACTTTCGTAATGTACTTAGCACTGGCATGTATATTGCTAGCAAACCCGTTGCGTCATTTCGAAGTTTACCTCGGTCAATGGAGCATAAGTGGACCCGGCCGAGCCTTTCGTATTATACCTATGTTTGACGGTATTGGTATAGCTATATGTATCAACGCTATAATACGTGCCATAAACTGTGGCACAATTGCCGCTATAGCTGCGGTGTATGTCTTATATTCTGTAGCGGATGCAAAACTGCCTTTCACATACTGCAGGTCTAATTAA

Protein

MDNAIGGVTTHRRLKGRRRLRLGSLAIGCLLAMHCRVTASAVTGGLITFVMYLALACILLANPLRHFEVYLGQWSISGPGRAFRIIPMFDGIGIAICINAIIRAINCGTIAAIAAVYVLYSVADAKLPFTYCRSN

Uniprot

A0A3S2LPA4 A0A212FIU6 A0A194PJB4 A0A194R8U3 A0A2H1WF05 A0A2A4K002 + More

Pubmed

22118469 26354079

EMBL

RSAL01000040 RVE50983.1 AGBW02008329 OWR53649.1 KQ459602 KPI93417.1 + More
KQ460615 KPJ13670.1 ODYU01007888 SOQ51054.1 NWSH01000353 PCG77093.1

Proteomes

UP000283053 UP000007151 UP000053268 UP000053240 UP000218220

Pfam

PF00209 SNF

Interpro

IPR037272 SNS_sf + More
IPR000175 Na/ntran_symport

SUPFAM

SSF161070 SSF161070

ProteinModelPortal

A0A3S2LPA4 A0A212FIU6 A0A194PJB4 A0A194R8U3 A0A2H1WF05 A0A2A4K002 + More

KEGG

101744832 no KO assigned | (RefSeq) sodium-dependent noradrenaline transporter-like

GO

GO:0016021 GO:0015293 GO:0005328 GO:0006836 GO:0005488 GO:0016579 GO:0010181 GO:0006811 GO:0016020 GO:0016876 GO:0043039

PANTHER

PTHR11616

Length:

135

Number of predicted TMHs:

3

Exp number of AAs in TMHs:

64.20174

Exp number, first 60 AAs:

34.07661

Total prob of N-in:

0.94608

POSSIBLE N-term signal

sequence

inside

1 - 19

TMhelix

20 - 37

outside

38 - 41

TMhelix

42 - 64

inside

65 - 100

TMhelix

101 - 123

outside

124 - 135

Pi

47.146595

Theta

60.530126

Tajima's D

-1.307312

CLR

0

CSRT

0.0834958252087396

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics