SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO09070  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA007510
Annotation
PREDICTED:_LOW_QUALITY_PROTEIN:_mediator_of_RNA_polymerase_II_transcription_subunit_14_[Bombyx_mori]
Full name
Mediator of RNA polymerase II transcription subunit 14      
Alternative Name
Mediator complex subunit 14
dRGR1
Location in the cell
Nuclear   Reliability : 1.38 PlasmaMembrane   Reliability : 1.466
 

Sequence

CDS
ATGGTACCTGTAGCTATAGAAGGTTGTACTCAAGGTGCCGAGGGTGGCGGAGCTCGAGTTGGCTCCATTTCTCTTGCTATGTTAATAGATTTCATCGTTCAAAGAACTTACGATGAACTTACTGTGCTGGCAGAACTGTTGCCTCGAAAAACGGATATGGAACGTAAAATTGAAATTTATAAATTTAGTGCAAGAACGCGTCAATTATTTGTACGTTTACTTGCTTTAGTAAAATGGGCAAGCAGTGCAACAAAAGTGGACAGGTCGGCTCATATTATGGCCTTCTTGGACAAACAAGCAATGTTGTTTATTGAAACGGCTGATGTTTTGGCAAGAGTGGCTAGAGAAACTCTAGTTCACGCTAGGCTACCAACATTCCATATGGCGGCAGCTGTTGAAGTGCTCACTCTGGGTACATACAGCCGACTACCAGCTGTAATTCGTGAGCGTTTAGTACCGCCTCCCTCATTGACTGCCGGAGAACGCAGATCTACACTTCGTGCTCTAGCTCACATTGTCCGACAGAGGCTCACTACTGCATCGCTACCCAGTGATGTGAGAAATTTAAAGGTTGAGAATGGCAGAGCCACATTTACGGTAGGCCAGGATTTTAGTGTATCTCTCACAGTAATGGGAGATGCACCTAACCTACCATGGCGTTTATTGGATATTGCTATTCTCATCCAGGATAACGAAACAGGAGAGGGTAAGCCGTTAGTGCACAGTTCTCAACTTGCATGGCTTCGTGGAGTAGCTCAAGCAAGATTAGCAGCTGCTGGGCTAAGTGGCGCGCTCACCTCGTTACGTTTCTTTTGTCGATCATTGTCACTAGAATTACTATATACGCAGACATTAAGGCTATGTAGAGATAGATTATCCCGACATCTTCAAGTTGACAAATATATTCCGGGACAAAAGTTGCAGGTGTCATATTGGAAAGAACTAGGCTGTGAATTGGGGTATCGACTGGTCATCGGAGCTGAGGCTGATCAGCTGTGTGTATGGCATGTTCCGGCACTAGCAGGCGGTGAACGCGTAGCGACAGCGCTCACTCCGCACGCGCCTTCAATGGAGCGTCTACTTGCTCACACAGTCCATCAGCGCTCTAGGCAACGACTCAATGATCTAAAAGTTCTGCTTAATGATATGGGGGTGGAGTGCAGCGTGGGCGGCTGGCCGTGCGTGCTGGCGTGCTCGGTGGTGTCGCCGTGTCTGCGCGCGGAGCAGCTGCTGGTGTCGGTGGGCGCGCACGGCGGCCGGCTGCGGGCTCGCGTGCCCGCCTACCCCGCCACGCCGCGCATGCCCGACCTCGCTGCCGCACTCGCTAGATCCGATCTCAACCAGATCAAACTGCACCTCACGCATCTTCGATTTTGGCTTGTTGCGCGACGCTGTGAGAAAACCCTTCAGCATCTACCCGCCAGTGTCTGTGAGCATCTACCGTTCCTCCACGGACCGGATCACCCACTGAATCAATTGTCGTCAGACCGACTTTATGTGACGCTTCATCGTCACACAGATCACATTCTGGTACACTTTATTGCGAGTGAGCGAGTCCACGGCCCATCACAGCGTTGCAACTTTGAGATAGTGGAAATGAAAGAAGTAGCAGCGGGCAGCACGGCCACCACGAGCAACAGCTCCAACAGCGGCAGCGCCTGCTCCGTCGCGCTGTCCTTCCATCTCGCCGGAGCCAGGAGATGTACGCCTGAAGAATGCGAGGAGGAGACGCCATCGCCGGCTAATAACAACCAGCCCCCGCCAACTGCAGCGCGGGCCTTCCTGAAGCTGCACTCGCTGGTTGAACTCGATACTTTCACACTTACTCACGGACCCTTTACGCCTTTGGATACTCCAGGTATGCAGCCGGGTAAGAGGAAGTTATCGTCTCCGAACGCCCGGTCGGTGCGCGTCCGTCAGCCGGCGTACTTCTTGCCGGAGCTCGCACACGTGGTGGCGGCCGCCGACGAACGCGTTCCGTTCGTGAACCTCGCCCAAGAATTGTCGAGCCGCGGCGTGAGTCACGGCGGGGTGCAGGGCGAGTGGAGCGGCTCGGCGCTGGGCATGCGGCTGGTGTCGCTGCCGCTGCCGGAGGGCGCGTCCGTGGCAGCCGGCTCGGCCCTGCGCGCGCGCCTGCTGGCCACCACCGTGCGCCTCACCACCAAGAACCAGGCGCGGGTTTGGACGGCCGAGATCGTATTCCACGGCTCGCCTCTTCGCACGCCCAACCCTAAAGAACAAGGAGAAAGACGGTGTGTGTACCTGCAGTACGAGCTGGGCACGGACGCGGGCCGCACCGCGGAGGCCTTCCTCGCCGACTGGGCCGCCATCGTGCACCTGCACACGCTGCTGCACGACTTCATGTTGCGGCCGGCTCAAGAGCGCGAGAGCCTGTGGCAGGGCGTGTTCATTCGCTCGTACACGTACCGCTCGCTCGTGGTGGGGTTCGGTGCGGGCACGCGCGCCACCGCCGTGCTGCAGTGGAGCGCCGCCGCCCAGCGCTACACCGTCGCCACGCCCGCGCACCAGCCCGCCGCCAACGCGCACCATCTGCTGCACCATCACCTCGACCAGTACATAAACACTCACAAGGACCTGATGTCCCTCGGCGTGGTGCTGCGCGAGACGTACGCGCCGCTGCTGGCGCTGAGCCGCCTCCCCACGCTGCCACAGCTCGGACTGCACCACGTCCGCACACAGATGCCGACACCTACCTTCACTTTGCTCGCTCATTCCTGGAGAAAGATTCGCGTGATATATGCCGGAGCGTATTCAATTGAAGTGGGTATTAGAGGGGGAGGAATTGTCACTATTCGAGACGGATCATACTCGAAGTTCGATCGTGCGCCCATCGTGGACGAGTTTGCTCCCGCACAAGGACTGAAGACATTCTTATCGAGATACGTCGACGACAGCTTAAGCGCGCGCTTAGTGGCAGAAGATGATAATCCACCTTCACCTATGTCGCCAATGCCACCTGGTGGTCTACGTTTCCCTGCGCCTCTGACTCCACCACAGCCACACACACCACACTCTGCGCCGGTAACGCCGCACCCTGCCTCGCCCGCTCATCAGATGGGTGGAGGGTCCTTCAACCTGACATCTCCCCCGGGCGGCGGCGGCGGCGGTGTGGGCGCGTCTCCTGCATCCCCCATGGCGCCGTCACCGCACGCCGCCCCCGCCGCCTCCCCGCACCCGCCGCCCACGTCGCCTTTCACCGCATGGCCTGCTTCGCCCTCGCTGCCGCGGCCTTCACCCGGGCACCATCCTTCGCCCAGGCACCACATCGATCACAAAGGTCCCCAGGCCAGTTCGTCGACGAGCAGTCGCAGCGGAGGTCGTGCTTGGGGCGGCGGCGCGGCCACCCCGCTGGCGGTGAGCAAGCTGGAGGCGCTGTGCACGCCGTGCGAGCCTCCCCCCGGCGCCCCGCCCGGCCCCGCGCTCGCCCCGCTGCAGCGCTTCCTTGCCTGCGTCTACATGAAACGGACCTTGCAACGATTCGTAAACGTTGAGGAATTTGTCAATTTGACATTGGTCTCTGTGGACGCGACTAGCCTGACGTTCCGCAGCGACGCCGCGGGACTGTGTGCGCGCGTCGCTCTGCACCCGCAACACATGCAGTCCTTGCACTTGCACCTCACGCCGCTGCCAGAGAGCAAGGAGATATGGTCGCCCGATGACCTGCAGGTCATAGAAAAATTCTTCGAGGTTCGCGTGGCGATAGCTCCGTACCGTCCCACCGCCCTGCAGGGGTGGGTGCGGTGGTGGGGCGCGCCGGCCGCGGCGCTGACGTCGCTGGTGGCGGTGATGCGCGCGGAGCTGGCGCCGCAGGTCCCGGCGCTGTGGGCGCTGCAGTGGGCGCTGCGCATCCCGCCCGCCGCGCCGCCCATCGTGCCCGCCGGACAACCGGCAGTCTTACTAGCAAAAAACAAAATATTATTCTTCATATGTTTGACTCGAATGGACACCCAGCTGGTGCTTCCGCTCGTGTACGACATGCAGCTCAACGTCACGCAACTGGCCGACAAACAGAACGCGCAGCCGCACCTGATAGCGGTCAGCCTGCATCTGAAGCGGTTCAACGAATTCAATCAATCCCATTCGGAGTGCACCCTGTGGCCGGCGGTGCGCGACCTCGTCACCAACTTCACGCTCCCGGCGGAGGCCGGCGCCGCGCCCCCGCCCCCCTAG
Protein
MVPVAIEGCTQGAEGGGARVGSISLAMLIDFIVQRTYDELTVLAELLPRKTDMERKIEIYKFSARTRQLFVRLLALVKWASSATKVDRSAHIMAFLDKQAMLFIETADVLARVARETLVHARLPTFHMAAAVEVLTLGTYSRLPAVIRERLVPPPSLTAGERRSTLRALAHIVRQRLTTASLPSDVRNLKVENGRATFTVGQDFSVSLTVMGDAPNLPWRLLDIAILIQDNETGEGKPLVHSSQLAWLRGVAQARLAAAGLSGALTSLRFFCRSLSLELLYTQTLRLCRDRLSRHLQVDKYIPGQKLQVSYWKELGCELGYRLVIGAEADQLCVWHVPALAGGERVATALTPHAPSMERLLAHTVHQRSRQRLNDLKVLLNDMGVECSVGGWPCVLACSVVSPCLRAEQLLVSVGAHGGRLRARVPAYPATPRMPDLAAALARSDLNQIKLHLTHLRFWLVARRCEKTLQHLPASVCEHLPFLHGPDHPLNQLSSDRLYVTLHRHTDHILVHFIASERVHGPSQRCNFEIVEMKEVAAGSTATTSNSSNSGSACSVALSFHLAGARRCTPEECEEETPSPANNNQPPPTAARAFLKLHSLVELDTFTLTHGPFTPLDTPGMQPGKRKLSSPNARSVRVRQPAYFLPELAHVVAAADERVPFVNLAQELSSRGVSHGGVQGEWSGSALGMRLVSLPLPEGASVAAGSALRARLLATTVRLTTKNQARVWTAEIVFHGSPLRTPNPKEQGERRCVYLQYELGTDAGRTAEAFLADWAAIVHLHTLLHDFMLRPAQERESLWQGVFIRSYTYRSLVVGFGAGTRATAVLQWSAAAQRYTVATPAHQPAANAHHLLHHHLDQYINTHKDLMSLGVVLRETYAPLLALSRLPTLPQLGLHHVRTQMPTPTFTLLAHSWRKIRVIYAGAYSIEVGIRGGGIVTIRDGSYSKFDRAPIVDEFAPAQGLKTFLSRYVDDSLSARLVAEDDNPPSPMSPMPPGGLRFPAPLTPPQPHTPHSAPVTPHPASPAHQMGGGSFNLTSPPGGGGGGVGASPASPMAPSPHAAPAASPHPPPTSPFTAWPASPSLPRPSPGHHPSPRHHIDHKGPQASSSTSSRSGGRAWGGGAATPLAVSKLEALCTPCEPPPGAPPGPALAPLQRFLACVYMKRTLQRFVNVEEFVNLTLVSVDATSLTFRSDAAGLCARVALHPQHMQSLHLHLTPLPESKEIWSPDDLQVIEKFFEVRVAIAPYRPTALQGWVRWWGAPAAALTSLVAVMRAELAPQVPALWALQWALRIPPAAPPIVPAGQPAVLLAKNKILFFICLTRMDTQLVLPLVYDMQLNVTQLADKQNAQPHLIAVSLHLKRFNEFNQSHSECTLWPAVRDLVTNFTLPAEAGAAPPPP

Summary

Description
Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.
Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors (By similarity).
Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional pre-initiation complex with RNA polymerase II and the general transcription factors. Required for activated transcription of the MtnA, MtnB and MtnD genes.
Subunit
Component of the Mediator complex.
Component of the Mediator complex, which may include CDK8, MED4, MED6, MED11, MED14, MED17, MED18, MED20, MED21, MED22, MED27, MED28, MED30 and MED31.
Similarity
Belongs to the Mediator complex subunit 14 family.
Keywords
Activator   Complete proteome   Nucleus   Reference proteome   Repeat   Transcription   Transcription regulation   Alternative splicing   Phosphoprotein  
Feature
chain  Mediator of RNA polymerase II transcription subunit 14
splice variant  In isoform 2.
EMBL
ODYU01007888    SOQ51055.1    RSAL01000040    RVE50982.1    KQ459602    KPI93416.1    + More
NEVH01026086    PNF14925.1    PNF14924.1    PNF14921.1    PNF14922.1    KK853204    KDR09873.1    DS235088    EEB11666.1    GBBI01002772    JAC15940.1    GL449784    EFN81999.1    ACPB03020385    KZ288349    PBC27407.1    GEZM01054670    JAV73497.1    KQ971381    EEZ97239.1    GEBQ01019365    JAT20612.1    GBYB01002045    JAG71812.1    QOIP01000003    RLU24369.1    ADTU01003517    ADTU01003518    ADTU01003519    GBYB01013150    JAG82917.1    AAZX01010201    NNAY01004168    OXU18250.1    KB632375    ERL93945.1    PYGN01002913    PSN29847.1    GGMS01001659    MBY70862.1    GFXV01004148    MBW15953.1    GDHF01011611    JAI40703.1    GDHF01032393    JAI19921.1    ABLF02036217    JRES01000932    KNC27173.1    GAMC01015262    JAB91293.1    UFQT01000388    SSX23844.1    UFQT01000676    SSX26456.1    ABLF02014277    CH477632    CH478476    EAT32910.1    JXJN01004346    AE014296    BT015951    AF289997    AY050240    BT150326    AGW25608.1    CH954178    EDV50058.1    CM000363    CM002912    EDX08702.1    KMY96693.1    CH480817    EDW49938.1    CM000159    EDW92730.1    CCAG010013729    CH916366    EDV96417.1    CH933816    EDW17143.2    CH379067    CH964154    EDW79898.2    CH902618    EDV38911.1    KQ414642    KOC66740.1    CH940647    KRF84035.1    EDW68823.1    DS231911    EDS45857.1    GFDL01013192    JAV21853.1    GFDL01013195    JAV21850.1    JH431851    LJIJ01000558    ODM96259.1   
Pfam
PF08638   Med14
Interpro
IPR013947   Mediator_Med14       
PDB
5U0S     E-value=4.65686e-20,     Score=246

Ontologies

Topology

Subcellular location
Nucleus  
Length:
1396
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.211360000000001
Exp number, first 60 AAs:
0.06387
Total prob of N-in:
0.00576
outside
1  -  1396
 
 

Population Genetic Test Statistics

Pi
227.447096
Theta
162.391716
Tajima's D
0.565037
CLR
234.28345
CSRT
0.525423728813559
Interpretation
Uncertain
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