Gene

KWMTBOMO09066  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA007507

Annotation

PREDICTED:_probable_ubiquitin_carboxyl-terminal_hydrolase_FAF-X_isoform_X1_[Bombyx_mori]

Location

Bomo_Chr15(+):10752325-10757529      View in EpiBrowser

Location in the cell

Extracellular   Reliability : 1.767 Nuclear   Reliability : 2.095

CDS

ATGAAAGAACAAGACCAGATGCCTGGGGAGATGGCATTCCCTGAGGCGAAATTAAAGGCACTGGAAGACAAACTTTCACATCCCCGTTGGGTTGTACCAGTGCTGCCAGAACAAGAATTGGAAGCTCTTCTAGTCGCTGCAACAGAACTAGCTGCAAAAGGAGAAGATGTACACAATGCGGCGTGTCAGAAATTTTACACTGATGCTCTCACAATATCTTTTACAAAGATATTAACAGATGATGCAGTATCATCGTGGAAAAATAATATACAACAGTGTGTAAGATCCAACTGTGAGAAGCTAGTCAAGTTGTGTGCTCTTAAACTTGATGATCCCAGATTTTTGCATCTATTGACTATGACATTAAACCCCAGTAACAAGTTTCATATGTTCAATGCATCGCGAACGAGCGAGGGCCTTTCGGTGACATCAAATACCACTGGTACAGGTCAAGGGCCTTCTCAAGACATAGAAATTTTTGCTAGGTCTCATGATCATCGTACTCCTAGGGGGTGGCTGGTCCATCTAATTAATGTGTTTGGTCAAGCAGGCGGCTTTGTGAAATTAAGGGAGAGGTTTGAAGAGATAATGGGTTTTCAAAAGTCTGATCTCAATTCATCTATGAATACAGAAGAAAAGGTATTGTCTGAGATGATGGAAAAAGAAAGTGATGAGAGCAAGACATCTAACACCAATTGTATTGAACCAGTTCTTGTTATTGGGGAAAACAGTGATGTAAGTACTAATTTAAAATTATTTTAA

Protein

MKEQDQMPGEMAFPEAKLKALEDKLSHPRWVVPVLPEQELEALLVAATELAAKGEDVHNAACQKFYTDALTISFTKILTDDAVSSWKNNIQQCVRSNCEKLVKLCALKLDDPRFLHLLTMTLNPSNKFHMFNASRTSEGLSVTSNTTGTGQGPSQDIEIFARSHDHRTPRGWLVHLINVFGQAGGFVKLRERFEEIMGFQKSDLNSSMNTEEKVLSEMMEKESDESKTSNTNCIEPVLVIGENSDVSTNLKLF

Cofactor

FMN

Similarity

Belongs to the peptidase C19 family.
Belongs to the FMN-dependent alpha-hydroxy acid dehydrogenase family.

Uniprot

H9JDB0   A0A212EP08   A0A2A4J087   A0A2A4J0N2   A0A3S2TP78   A0A2H1WVS5   + More
A0A194PL04   A0A194R833   A0A310SNR3   A0A2A3EAM0   A0A088A5Z8   A0A224XFS3   A0A1B6EYR0   A0A067RUD8   A0A069DY94   A0A2J7R122   A0A1B6HSU7   A0A2J7R116   A0A0J7NNW5   A0A1B6C8S8   A0A3L8DR29   A0A154P3H2   A0A0L7QM89   E2A416   A0A232F7U1   K7IRB1   A0A195C536   U4UCY8   N6TM76   D6WKR1   A0A139WI67   A0A151JRZ4   F4W771   A0A151WV29   A0A195BJS5   A0A158NJ55   A0A195EYM8   A0A0T6AU90   A0A1Y1LX88   A0A2D4PNU0   C3ZE43   A0A1E1XGF4   A0A443SJY2   A0A2R5LEU6   A0A433SLI9   B4DGX9   A0A2R2MQM1   A0A0N0BI91   A0A1S3IUS1   A0A2K6GZY0   E0VC08   A0A2P4TGZ1   A0A3Q2HLU3   A0A2U4C119   A0A2K6H024   A0A3Q2IDU3   A0A2U4C0Y1   F6WF49   A0A2Y9S8T1   L8IWX3   A0A2Y9S7Q2   A0A2Y9LTS1   A0A2U3V074   A0A2U4C0S9   A0A384ACM9   A0A2Y9LQT8   G5E630   A0A384ACG5   A0A452FL98   W5NVJ3   F7CE06   A0A146KRP5   A0A146LHV0   A0A2U4C0W6   A0A2Y9LYK2   G3TXD1   A0A2Y9S0S0   G3T223   U3JFP5   A0A287AC95   A0A287AM69   E9PWA9   Q8C7T5   A0A287A891   A0A287B4Y6   V4AR29   G3GSH2   A0A0N8CJH9   I3LMY9   A0A0P5ZXL4   A0A0P5U0S7   A0A0P6GU97   A0A0P5CYN1   A0A0P5AML0   A0A0P5VQM3   A0A0N8CJW0   A0A3L7H1V6  

Pubmed

19121390    22118469    26354079    24845553    26334808    30249741    + More
20798317    28648823    20075255    23537049    18362917    19820115    21719571    21347285    28004739    18563158    28503490    20566863    19892987    22751099    19393038    20809919    26823975    19468303    21183079    10349636    11042159    11076861    11217851    12466851    16141073    23254933    21804562    30723633    29704459   

EMBL

BABH01030153    BABH01030154    BABH01030155    AGBW02013542    OWR43235.1    NWSH01004559    + More
PCG64934.1    PCG64933.1    RSAL01000033    RVE51433.1    ODYU01011426    SOQ57158.1    KQ459602    KPI93409.1    KQ460615    KPJ13664.1    KQ760706    OAD59322.1    KZ288305    PBC28777.1    GFTR01008974    JAW07452.1    GECZ01026966    JAS42803.1    KK852413    KDR24425.1    GBGD01000019    JAC88870.1    NEVH01008214    PNF34529.1    GECU01029977    JAS77729.1    PNF34528.1    LBMM01002916    KMQ94190.1    GEDC01027569    GEDC01006879    JAS09729.1    JAS30419.1    QOIP01000005    RLU22895.1    KQ434809    KZC06489.1    KQ414894    KOC59763.1    GL436519    EFN71868.1    NNAY01000700    OXU26914.1    KQ978317    KYM95273.1    KB632303    ERL91819.1    APGK01018912    KB740085    ENN81554.1    KQ971342    EFA03030.2    KYB27698.1    KQ978579    KYN30005.1    GL887813    EGI69955.1    KQ982708    KYQ51790.1    KQ976453    KYM85441.1    ADTU01017494    KQ981920    KYN33012.1    LJIG01022814    KRT78580.1    GEZM01044529    GEZM01044528    JAV78164.1    IACN01088329    LAB59675.1    GG666612    EEN48999.1    GFAC01000854    JAT98334.1    NCKV01001752    RWS27831.1    GGLE01003915    MBY08041.1    RQTK01001514    RUS70007.1    AK294828    BAG57940.1    KQ435736    KOX77091.1    DS235044    EEB10914.1    PPHD01000318    POI35627.1    JH880514    ELR60956.1    GAPO01000002    JAB84491.1    AMGL01114840    AMGL01114841    GDHC01020989    JAP97639.1    GDHC01011704    JAQ06925.1    AGTO01001101    AGTO01011221    CU856620    FO082392    FO082421    FP565925    FQ440020    FQ456870    FQ670174    FQ976616    FQ976646    AL669967    AK049283    BAC33657.2    KB201549    ESO96146.1    JH000011    EGV96558.1    GDIP01125615    JAL78099.1    DQIR01171567    HDB27044.1    GDIP01050578    JAM53137.1    GDIP01123722    JAL79992.1    GDIQ01029298    JAN65439.1    GDIP01165159    JAJ58243.1    GDIP01196808    JAJ26594.1    GDIP01111268    JAL92446.1    GDIP01124567    JAL79147.1    RAZU01000328    RLQ59908.1   

Proteomes

UP000005204    UP000007151    UP000218220    UP000283053    UP000053268    UP000053240    + More
UP000242457    UP000005203    UP000027135    UP000235965    UP000036403    UP000279307    UP000076502    UP000053825    UP000000311    UP000215335    UP000002358    UP000078542    UP000030742    UP000019118    UP000007266    UP000078492    UP000007755    UP000075809    UP000078540    UP000005205    UP000078541    UP000001554    UP000288716    UP000271974    UP000085678    UP000053105    UP000233160    UP000009046    UP000002281    UP000245320    UP000248484    UP000248483    UP000261681    UP000009136    UP000291000    UP000002356    UP000007646    UP000016665    UP000008227    UP000000589    UP000030746    UP000001075    UP000273346   

PRIDE

H9JDB0    E9PWA9    G3GSH2   

Pfam

PF00443   UCH        + More
PF01070   FMN_dh

Interpro

IPR018200   USP_CS        + More
IPR038765   Papain-like_cys_pep_sf       
IPR001394   Peptidase_C19_UCH       
IPR016024   ARM-type_fold       
IPR028889   USP_dom       
IPR000262   FMN-dep_DH       
IPR013785   Aldolase_TIM       
IPR037396   FMN_HAD       

SUPFAM

SSF54001   SSF54001        + More
SSF48371   SSF48371       

Gene 3D

3.20.20.70    

ProteinModelPortal

H9JDB0   A0A212EP08   A0A2A4J087   A0A2A4J0N2   A0A3S2TP78   A0A2H1WVS5   + More
A0A194PL04   A0A194R833   A0A310SNR3   A0A2A3EAM0   A0A088A5Z8   A0A224XFS3   A0A1B6EYR0   A0A067RUD8   A0A069DY94   A0A2J7R122   A0A1B6HSU7   A0A2J7R116   A0A0J7NNW5   A0A1B6C8S8   A0A3L8DR29   A0A154P3H2   A0A0L7QM89   E2A416   A0A232F7U1   K7IRB1   A0A195C536   U4UCY8   N6TM76   D6WKR1   A0A139WI67   A0A151JRZ4   F4W771   A0A151WV29   A0A195BJS5   A0A158NJ55   A0A195EYM8   A0A0T6AU90   A0A1Y1LX88   A0A2D4PNU0   C3ZE43   A0A1E1XGF4   A0A443SJY2   A0A2R5LEU6   A0A433SLI9   B4DGX9   A0A2R2MQM1   A0A0N0BI91   A0A1S3IUS1   A0A2K6GZY0   E0VC08   A0A2P4TGZ1   A0A3Q2HLU3   A0A2U4C119   A0A2K6H024   A0A3Q2IDU3   A0A2U4C0Y1   F6WF49   A0A2Y9S8T1   L8IWX3   A0A2Y9S7Q2   A0A2Y9LTS1   A0A2U3V074   A0A2U4C0S9   A0A384ACM9   A0A2Y9LQT8   G5E630   A0A384ACG5   A0A452FL98   W5NVJ3   F7CE06   A0A146KRP5   A0A146LHV0   A0A2U4C0W6   A0A2Y9LYK2   G3TXD1   A0A2Y9S0S0   G3T223   U3JFP5   A0A287AC95   A0A287AM69   E9PWA9   Q8C7T5   A0A287A891   A0A287B4Y6   V4AR29   G3GSH2   A0A0N8CJH9   I3LMY9   A0A0P5ZXL4   A0A0P5U0S7   A0A0P6GU97   A0A0P5CYN1   A0A0P5AML0   A0A0P5VQM3   A0A0N8CJW0   A0A3L7H1V6  

KEGG

101738334    K11840 ubiquitin carboxyl-terminal hydrolase 9/24 [EC:3.4.19.12] | (RefSeq) probable ubiquitin carbo

GO

GO:0016579   GO:0036459   GO:0006511   GO:0016787   GO:0016491   GO:0004197   GO:0004843   GO:0005737   GO:0030426   GO:0050821   GO:1990380   GO:0030509   GO:0071947   GO:1901537   GO:0007179   GO:0070410   GO:0005829   GO:0001764   GO:0048675   GO:0042752  

Length:

253

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.09821

Exp number, first 60 AAs:

0

Total prob of N-in:

0.05527

outside

1  -  253

 

 

Pi

329.153584

Theta

196.362636

Tajima's D

1.869698

CLR

0

CSRT

0.860206989650517

Interpretation

Uncertain