Silkworm Genome Informatics Database

Gene

KWMTBOMO09065 Validated by peptides from experiments

Pre Gene Modal

BGIBMGA007583

Annotation

PREDICTED:_F-box-like/WD_repeat-containing_protein_TBL1XR1_[Amyelois_transitella]

Location

Bomo_Chr15(-):10749064-10750834 View in EpiBrowser

Location in the cell

Extracellular Reliability : 1.896

CDS

ATGAGTTTTACTAGTGACGAAGTAAACTTTCTTGTGTACCGCTACTTACAAGAGTCAGGTTTCCACCATTCAGCATATTCTTTTGGAATTGAATCACACATATCACAAAGTAACATTAACGGAGCTCTTGTTCCTCCAGCAGCATTATTGAATATTATACAAAAAGGATTACAATACACTGCAGCGGAAATAACATTAGGCGATAATGGAACTGAAAATCGTCTCACAGAAAGCCTCAGCTTGATTGATGCTGTTACTCCAGATGTAGTAGCAGCTAAACAAAATGCTCACAATGCTCAGAAACAAGCTGCCAAAACAGAACAGGGATCTGGAAGCGAACAAAATGGTGTTGATGTATGTTTTTTTTATTTGTTGTTTGTAATGCTATTTGTGATTTAA

Protein

MSFTSDEVNFLVYRYLQESGFHHSAYSFGIESHISQSNINGALVPPAALLNIIQKGLQYTAAEITLGDNGTENRLTESLSLIDAVTPDVVAAKQNAHNAQKQAAKTEQGSGSEQNGVDVCFFYLLFVMLFVI

Uniprot

H9JDI6 A0A437BMC3 A0A2A4J0P6 A0A2H1WVR3 A0A1E1WEY5 A0A212EP52 + More
A0A194R7N8 A0A194PJA4 A0A1E1WNG6 S4PTT4 F4X308 A0A151JTE1 A0A158NMP9 K7IPR8 E0VC07 A0A1D2N2Y2

Pubmed

19121390 22118469 26354079 23622113 21719571 21347285 + More
20075255 20566863 27289101

EMBL

BABH01030156 RSAL01000033 RVE51435.1 NWSH01004559 PCG64943.1 ODYU01011426 + More
SOQ57159.1 GDQN01005535 JAT85519.1 AGBW02013542 OWR43237.1 KQ460615 KPJ13662.1 KQ459602 KPI93407.1 GDQN01002475 JAT88579.1 GAIX01011483 JAA81077.1 GL888604 EGI59166.1 KQ981936 KYN32774.1 ADTU01020664 DS235044 EEB10913.1 LJIJ01000283 ODM99414.1

Proteomes

UP000005204 UP000283053 UP000218220 UP000007151 UP000053240 UP000053268 + More
UP000007755 UP000078541 UP000005205 UP000002358 UP000009046 UP000094527

PRIDE

H9JDI6

Pfam

PF00400   WD40        + More
PF08513   LisH
PF12894   ANAPC4_WD40

Interpro

IPR036322   WD40_repeat_dom_sf        + More
IPR019775   WD40_repeat_CS
IPR020472   G-protein_beta_WD-40_rep
IPR001680   WD40_repeat
IPR017986   WD40_repeat_dom
IPR006594   LisH
IPR015943   WD40/YVTN_repeat-like_dom_sf
IPR011047   Quinoprotein_ADH-like_supfam
IPR024977   Apc4_WD40_dom
IPR011044   Quino_amine_DH_bsu

SUPFAM

SSF50998   SSF50998        + More
SSF50978   SSF50978
SSF50969   SSF50969

Gene 3D

2.130.10.10

ProteinModelPortal

H9JDI6 A0A437BMC3 A0A2A4J0P6 A0A2H1WVR3 A0A1E1WEY5 A0A212EP52 + More
A0A194R7N8 A0A194PJA4 A0A1E1WNG6 S4PTT4 F4X308 A0A151JTE1 A0A158NMP9 K7IPR8 E0VC07 A0A1D2N2Y2

PDB

2XTE E-value=1.81472e-30, Score=324

KEGG

101745860 K04508 transducin (beta)-like 1 | (RefSeq) F-box-like/WD repeat-containing protein TBL1XR1

PATHWAY

04013 MAPK signaling pathway - fly - Bombyx mori (domestic silkworm)
04310 Wnt signaling pathway - Bombyx mori (domestic silkworm)

GO

GO:0005515 GO:0000922 GO:0005815 GO:0007020 GO:0043015 GO:0005254 GO:0006811 GO:0016020 GO:0016876 GO:0043039

Length:

132

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.60649

Exp number, first 60 AAs:

0.04023

Total prob of N-in:

0.10142

outside

1 - 132

Pi

219.063233

Theta

191.508675

Tajima's D

0.343938

CLR

0.135297

CSRT

0.468476576171191

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics