Gene

KWMTBOMO09064  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA007583

Annotation

Wd-repeat_protein_[Operophtera_brumata]

Location

Bomo_Chr15(-):10745254-10747884      View in EpiBrowser

Location in the cell

Extracellular   Reliability : 4.127

CDS

ATGATTGCACAAGCTGCAGCAAGTGCTGAGACACCAGCATCAAACATACCCGTGCCTATGGACATGGACACATCAATTGAAATTCCAGCAAACAAAGCTACTGTACTAAGAGGTCATGAATCTGAAGTATTTATTTGTGCATGGAACCCAAGCACGGATTTACTGGCCAGTGGATCAGGTGATAGTACAGCTAGAATTTGGGATATGTCTGACAACCCAACAACTACTCCAAACCAACTAGTACTCAGACACTGTATTCAAAAAGGAGGTACTGAAGTACCAAGTAACAAAGATGTCACTTCACTGGACTGGAATTGCGATGGAAATCTTTTGGCAACTGGATCATATGATGGTTATGCTCGAATTTGGACTACAGATGGTACATTAGCATCGACTTTAGGTCAACACAAGGGACCTATATTTGCACTCAAATGGAACAAAAGAGGAAATTTCATCCTTAGTGCAGGGGTTGATAAAACAACGATTATATGGGATGCTTCAACAGGTCAATGTACCCAACAATTCTCATTCCATTTAGCACCAGCACTAGATGTAGACTGGCAGACAAATACATCCTTTGCTTCATGTTCTACTGACCAGTGTATACACGTTTGTAAATTAAATGCTGACAAACCAATTAAAAGTTTCCAAGGACACACCAATGAGGTTAATGCAATAAAATGGGACCCACAAGGACAGCTACTTGCATCTTGTTCTGATGATATGACTCTTAAAATTTGGTCAATGAAGCAAGATACCTGGGTTCATGATTTGCAAGCACATTCAAAAGAGATTTATACTATCAAATGGTCACCAACTGGACCAGGCACACAGAATCCTAACATGAATTTAATTCTTGCTAGTGCATCATTTGATTCAACCGTCCGCTTATGGGATGTTGAAAAAGGTGTCTGTATTCACACACTAACAAAACACACTGAACCAGTTTACAGTGTTGCATTCTCTCCTGATGGTAAGTTTTTGGCAAGCGGTTCTTTTGACAAGTGTGTTCACATTTGGTCAACACAAACTGGAAGCCTTGTACATTCTTACAAAGGTACTGGTGGTATTTTTGAAGTATGCTGGAATTCTCGTGGTACCAAAGTGGGAGCCAGTGCTAGTGACGGCAGTGTATTTGTGTTAGATCTTCGTAAACTTTGA

Protein

MIAQAAASAETPASNIPVPMDMDTSIEIPANKATVLRGHESEVFICAWNPSTDLLASGSGDSTARIWDMSDNPTTTPNQLVLRHCIQKGGTEVPSNKDVTSLDWNCDGNLLATGSYDGYARIWTTDGTLASTLGQHKGPIFALKWNKRGNFILSAGVDKTTIIWDASTGQCTQQFSFHLAPALDVDWQTNTSFASCSTDQCIHVCKLNADKPIKSFQGHTNEVNAIKWDPQGQLLASCSDDMTLKIWSMKQDTWVHDLQAHSKEIYTIKWSPTGPGTQNPNMNLILASASFDSTVRLWDVEKGVCIHTLTKHTEPVYSVAFSPDGKFLASGSFDKCVHIWSTQTGSLVHSYKGTGGIFEVCWNSRGTKVGASASDGSVFVLDLRKL

Uniprot

H9JDI6   A0A2H1WVR3   A0A2A4J0P6   A0A0L7LGD9   A0A1E1WNG6   A0A1E1WEY5   + More
A0A212EP52   A0A437BMC3   S4PTT4   A0A194R7N8   A0A194PJA4   A0A1L8DH56   A0A084WHE1   A0A182NTH6   A0A182PCX8   A0A182MH28   A0A182RJC8   A0A182QLI3   A0A182YRY3   A0A182JQL5   A0A182W7K0   A0A2M4AQN9   Q7Q371   A0A2M4BLM3   W5JNQ3   A0A182F5M4   A0A1Q3EY33   D6WDR4   B0WU23   A0A1Y1KUK6   A0A182IW42   A0A1W4XAC3   A0A336MGW6   A0A067R4E4   Q0IG19   A0A182H4C2   A0A2J7QTE6   A0A158NMP9   A0A1B6KNS3   A0A151JTE1   E2A6P0   A0A0J7KXV9   A0A1B6FQZ3   F4X308   E2BSL3   A0A1B6JTW2   A0A224XBI0   A0A151I579   A0A023F5T1   A0A1B6CVL4   A0A195C7U3   A0A195DBQ5   A0A0A9XQ00   A0A2J7QTE2   A0A151X1S4   T1HP17   A0A0C9PKT4   A0A034VWK9   A0A3L8E2W1   A0A182T831   A0A154PCE7   A0A0K8VHC3   A0A182V2A5   A0A182U665   A0A026WKW6   A0A0A1XPC2   A0A0L7QZ76   A0A0C9R465   A0A1D2N2Y2   A0A0P4VL98   W8BA75   J9K8P5   A0A0A1XR11   A0A2A3E8Z3   A0A0N0U2W8   A0A088ABG0   A0A310SQ35   E0VC07   A0A0P4WHA8   A0A0C9R0U5   A0A3R7P0J8   E9GI91   W8BQS5   A0A0P5QEU9   A0A226E5C7   A0A0N8B507   A0A0P5QL58   A0A2S2NXA4   K7IPS0   A0A0P6ACB0   A0A232F9N5   K7IPS1   A0A0P6A0N4   A0A0P5RHZ4   A0A0P5P3S8   K7IPR9   K7IPR8   A0A087UPF7   A0A0P5K1E2   A0A0P5LZ24  

Pubmed

19121390    26227816    22118469    23622113    26354079    24438588    + More
25244985    12364791    14747013    17210077    20920257    23761445    18362917    19820115    28004739    24845553    17510324    26483478    21347285    20798317    21719571    25474469    25401762    26823975    25348373    30249741    24508170    25830018    27289101    27129103    24495485    20566863    21292972    20075255    28648823   

EMBL

BABH01030156    ODYU01011426    SOQ57159.1    NWSH01004559    PCG64943.1    JTDY01001232    + More
KOB74454.1    GDQN01002475    JAT88579.1    GDQN01005535    JAT85519.1    AGBW02013542    OWR43237.1    RSAL01000033    RVE51435.1    GAIX01011483    JAA81077.1    KQ460615    KPJ13662.1    KQ459602    KPI93407.1    GFDF01008308    JAV05776.1    ATLV01023807    KE525346    KFB49635.1    AXCM01001390    AXCN02000703    GGFK01009768    MBW43089.1    AAAB01008964    EAA12470.4    GGFJ01004547    MBW53688.1    ADMH02000982    ETN64525.1    GFDL01014826    JAV20219.1    KQ971322    EFA00819.1    DS232099    EDS34739.1    GEZM01075102    JAV64278.1    UFQS01001200    UFQT01001200    SSX09666.1    SSX29456.1    KK852901    KDR14092.1    CH477274    EAT45194.1    JXUM01001213    JXUM01030308    JXUM01030309    KQ560880    KXJ80502.1    NEVH01011194    PNF31860.1    ADTU01020664    GEBQ01026868    JAT13109.1    KQ981936    KYN32774.1    GL437183    EFN70880.1    LBMM01002226    KMQ95109.1    GECZ01017210    JAS52559.1    GL888604    EGI59166.1    GL450241    EFN81259.1    GECU01005059    JAT02648.1    GFTR01006711    JAW09715.1    KQ976431    KYM87617.1    GBBI01002173    JAC16539.1    GEDC01019768    JAS17530.1    KQ978231    KYM96213.1    KQ981010    KYN10306.1    GBHO01021565    GBHO01021561    GBRD01010628    GDHC01009464    JAG22039.1    JAG22043.1    JAG55196.1    JAQ09165.1    PNF31859.1    KQ982588    KYQ54132.1    ACPB03018089    ACPB03018090    GBYB01001613    JAG71380.1    GAKP01012742    JAC46210.1    QOIP01000001    RLU27017.1    KQ434870    KZC09493.1    GDHF01014033    JAI38281.1    KK107159    EZA56692.1    GBXI01002900    GBXI01001884    JAD11392.1    JAD12408.1    KQ414681    KOC63934.1    GBYB01001611    JAG71378.1    LJIJ01000283    ODM99414.1    GDKW01003430    JAI53165.1    GAMC01010968    JAB95587.1    ABLF02029363    GBXI01001007    JAD13285.1    KZ288347    PBC27531.1    KQ435955    KOX68082.1    KQ761402    OAD57582.1    DS235044    EEB10913.1    GDRN01089071    JAI60722.1    GBYB01001610    GBYB01001612    JAG71377.1    JAG71379.1    QCYY01002215    ROT72027.1    GL732546    EFX80637.1    GAMC01010969    JAB95586.1    GDIQ01121486    JAL30240.1    LNIX01000007    OXA52071.1    GDIQ01212203    JAK39522.1    GDIQ01229893    GDIQ01123937    GDIQ01119090    GDIP01142508    LRGB01003375    JAL32636.1    JAL61206.1    KZS02934.1    GGMR01008979    MBY21598.1    GDIP01044562    JAM59153.1    NNAY01000577    OXU27581.1    GDIP01049197    JAM54518.1    GDIQ01106684    JAL45042.1    GDIQ01134193    JAL17533.1    KK120872    KFM79246.1    GDIQ01192212    GDIQ01121487    JAK59513.1    GDIQ01173713    JAK78012.1   

Proteomes

UP000005204    UP000218220    UP000037510    UP000007151    UP000283053    UP000053240    + More
UP000053268    UP000030765    UP000075884    UP000075885    UP000075883    UP000075900    UP000075886    UP000076408    UP000075881    UP000075920    UP000007062    UP000000673    UP000069272    UP000007266    UP000002320    UP000075880    UP000192223    UP000027135    UP000008820    UP000069940    UP000249989    UP000235965    UP000005205    UP000078541    UP000000311    UP000036403    UP000007755    UP000008237    UP000078540    UP000078542    UP000078492    UP000075809    UP000015103    UP000279307    UP000075901    UP000076502    UP000075903    UP000075902    UP000053097    UP000053825    UP000094527    UP000007819    UP000242457    UP000053105    UP000005203    UP000009046    UP000283509    UP000000305    UP000198287    UP000076858    UP000002358    UP000215335    UP000054359   

PRIDE

H9JDI6   

Pfam

PF00400   WD40        + More
PF08513   LisH
PF12894   ANAPC4_WD40

Interpro

IPR036322   WD40_repeat_dom_sf        + More
IPR019775   WD40_repeat_CS       
IPR020472   G-protein_beta_WD-40_rep       
IPR001680   WD40_repeat       
IPR017986   WD40_repeat_dom       
IPR006594   LisH       
IPR015943   WD40/YVTN_repeat-like_dom_sf       
IPR011047   Quinoprotein_ADH-like_supfam       
IPR011044   Quino_amine_DH_bsu       
IPR024977   Apc4_WD40_dom       
IPR011045   N2O_reductase_N       

SUPFAM

SSF50998   SSF50998        + More
SSF50978   SSF50978       
SSF50969   SSF50969       
SSF50974   SSF50974       

Gene 3D

2.130.10.10    

ProteinModelPortal

H9JDI6   A0A2H1WVR3   A0A2A4J0P6   A0A0L7LGD9   A0A1E1WNG6   A0A1E1WEY5   + More
A0A212EP52   A0A437BMC3   S4PTT4   A0A194R7N8   A0A194PJA4   A0A1L8DH56   A0A084WHE1   A0A182NTH6   A0A182PCX8   A0A182MH28   A0A182RJC8   A0A182QLI3   A0A182YRY3   A0A182JQL5   A0A182W7K0   A0A2M4AQN9   Q7Q371   A0A2M4BLM3   W5JNQ3   A0A182F5M4   A0A1Q3EY33   D6WDR4   B0WU23   A0A1Y1KUK6   A0A182IW42   A0A1W4XAC3   A0A336MGW6   A0A067R4E4   Q0IG19   A0A182H4C2   A0A2J7QTE6   A0A158NMP9   A0A1B6KNS3   A0A151JTE1   E2A6P0   A0A0J7KXV9   A0A1B6FQZ3   F4X308   E2BSL3   A0A1B6JTW2   A0A224XBI0   A0A151I579   A0A023F5T1   A0A1B6CVL4   A0A195C7U3   A0A195DBQ5   A0A0A9XQ00   A0A2J7QTE2   A0A151X1S4   T1HP17   A0A0C9PKT4   A0A034VWK9   A0A3L8E2W1   A0A182T831   A0A154PCE7   A0A0K8VHC3   A0A182V2A5   A0A182U665   A0A026WKW6   A0A0A1XPC2   A0A0L7QZ76   A0A0C9R465   A0A1D2N2Y2   A0A0P4VL98   W8BA75   J9K8P5   A0A0A1XR11   A0A2A3E8Z3   A0A0N0U2W8   A0A088ABG0   A0A310SQ35   E0VC07   A0A0P4WHA8   A0A0C9R0U5   A0A3R7P0J8   E9GI91   W8BQS5   A0A0P5QEU9   A0A226E5C7   A0A0N8B507   A0A0P5QL58   A0A2S2NXA4   K7IPS0   A0A0P6ACB0   A0A232F9N5   K7IPS1   A0A0P6A0N4   A0A0P5RHZ4   A0A0P5P3S8   K7IPR9   K7IPR8   A0A087UPF7   A0A0P5K1E2   A0A0P5LZ24  

PDB

5NAF     E-value=1.96756e-180,     Score=1624

KEGG

101745860    K04508 transducin (beta)-like 1 | (RefSeq) F-box-like/WD repeat-containing protein TBL1XR1

GO

GO:0000118   GO:0006357   GO:0016575   GO:0003714   GO:0005515   GO:0000922   GO:0005815   GO:0007020   GO:0043015   GO:0005254   GO:0006811   GO:0016020   GO:0016876   GO:0043039  

Length:

386

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00105

Exp number, first 60 AAs:

0

Total prob of N-in:

0.01292

outside

1  -  386

 

 

Pi

74.611881

Theta

125.957041

Tajima's D

-0.882921

CLR

1395.270869

CSRT

0.15849207539623

Interpretation

Uncertain