SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO09060
Pre Gene Modal
BGIBMGA007505
Annotation
PREDICTED:_ras-like_GTP-binding_protein_RhoL_[Papilio_xuthus]
Full name
Ras-like GTP-binding protein RhoL      
Location in the cell
Cytoplasmic   Reliability : 1.816 Nuclear   Reliability : 1.589
 

Sequence

CDS
ATGGGAACGACGAAGAGATTGAAGATAACTGTTGTTGGAGATGGTATGGTTGGCAAGACCTGCTTGCTATATGTATACACTAGAAATGAATTTCCTGAAGAATATGTGCCCACGGTATTTGACAATTATGTCGGCCACATCACCGTGGATGGAGAGGACGTAGAAATGGCGTTATGGGATACAGCTGGACAAGAAGATTATGAACGGTTAAGACCACTATCATATACGCAAACGAACTGCTTTTTAGTATGCTACTCTGTAGGGAGCAGATCATCTTACGAAAATGTAGTACACAAATGGTATCCTGAATTAAAGCACTTTAGTGCTTCTGTACCTATCGTCCTAGTAGCTACTAAAATTGACTTGAGGTCTTCGGATAAAGCCGTTGTCACAACTCAAGAAGGAAAGAAATTAAAGAAAAAAATCCGAGCAGCCCATTTGGTTGAATGTTCAGCACTAGAGCGGATAAACATGGACGAAGTATTCGAGGAAGCGGTGCGCGCGGCCCTCCGCAAGAAACCAGTCCACAAACGCACCTGCCAATATCTTTGA
Protein
MGTTKRLKITVVGDGMVGKTCLLYVYTRNEFPEEYVPTVFDNYVGHITVDGEDVEMALWDTAGQEDYERLRPLSYTQTNCFLVCYSVGSRSSYENVVHKWYPELKHFSASVPIVLVATKIDLRSSDKAVVTTQEGKKLKKKIRAAHLVECSALERINMDEVFEEAVRAALRKKPVHKRTCQYL

Summary

Description
Essential for the maturation of hemocytes.
Similarity
Belongs to the small GTPase superfamily. Rho family.
Keywords
Cell membrane   Complete proteome   GTP-binding   Lipoprotein   Membrane   Methylation   Nucleotide-binding   Prenylation   Reference proteome  
Feature
chain  Ras-like GTP-binding protein RhoL
propeptide  Removed in mature form
EMBL
KQ459602    KPI93404.1    NWSH01004559    PCG64947.1    KQ460615    KPJ13660.1    + More
ODYU01009673    SOQ54261.1    GDQN01000367    JAT90687.1    RSAL01000033    RVE51439.1    AGBW02013542    OWR43241.1    CM000364    EDX13623.1    CH480815    EDW42880.1    U50314    AB035355    AE014297    AY069811    BT120283    ADC27653.1    AFH06321.1    CH954181    EDV49777.1    CM000160    EDW96659.1    CH940650    EDW66899.1    GECU01035917    JAS71789.1    GECZ01023168    GECZ01009062    JAS46601.1    JAS60707.1    CH916369    EDV93585.1    PYGN01001564    PSN34038.1    GECU01007564    JAT00143.1    NEVH01013583    PNF28451.1    KK852751    KDR17130.1    AXCM01005162    GDHF01016058    JAI36256.1    GAKP01015552    GAKP01015551    GAKP01015550    GAKP01015549    GAKP01015548    GAKP01015547    JAC43400.1    CH933806    EDW15759.1    GEBQ01010363    JAT29614.1    CP012526    ALC47082.1    GFDL01006418    JAV28627.1    DS231832    EDS31800.1    GFDG01003046    JAV15753.1    CH479182    EDW34386.1    CM000070    EAL28582.1    KRT00861.1    GBXI01016173    GBXI01010818    GBXI01004874    GBXI01003661    JAC98118.1    JAD03474.1    JAD09418.1    JAD10631.1    CH902617    EDV44352.1    AAAB01008879    EAU77000.1    EGK96948.1    EGK96949.1    EGK96950.1    EGK96951.1    APCN01002105    OUUW01000008    SPP84550.1    CH477406    EAT41591.1    EAT41592.1    EAT41593.1    AXCN02000299    GGFJ01009725    MBW58866.1    GDAI01002488    JAI15115.1    GGFK01009308    MBW42629.1    JXUM01042312    JXUM01092912    JXUM01092913    GAPW01004802    KQ564019    KQ561319    JAC08796.1    KXJ72922.1    KXJ78996.1    CH964272    EDW84787.1    GEDC01027279    GEDC01020947    GEDC01012717    JAS10019.1    JAS16351.1    JAS24581.1    ADMH02002044    ETN59782.1    EZ423609    ADD19885.1    GAMD01002787    JAA98803.1    GGFM01007753    MBW28504.1    ATLV01010539    ATLV01010540    ATLV01010541    ATLV01010542    ATLV01010543    KE524586    KFB35573.1    GFDF01000318    JAV13766.1    AJVK01004274    GEZM01006866    GEZM01006865    GEZM01006864    GEZM01006863    GEZM01006862    JAV95612.1    GDKW01002961    JAI53634.1    AJWK01017662    AJWK01017664    GECL01001360    JAP04764.1    ACPB03000395    GBYB01008591    JAG78358.1    GBYB01003539    JAG73306.1    UFQT01005200    SSX35946.1    UFQT01000920    SSX28014.1    LBMM01003608    KMQ93327.1    GBGD01003095    JAC85794.1    SSX28012.1    KK107249    QOIP01000013    EZA54462.1    RLU15269.1    GFTR01003161    JAW13265.1    SSX28013.1    GEZM01006861    JAV95616.1    GL888406    EGI61473.1    GL436457    EFN71931.1    KQ981693    KYN37797.1    KQ979182    KYN22317.1    KQ982805    KYQ50490.1    KQ977294    KYN03890.1    ADTU01018869    GDHC01012248    JAQ06381.1    GBHO01025156    GDHC01004239    JAG18448.1    JAQ14390.1    KA649161    AFP63790.1    CVRI01000057    CRL01953.1   
Pfam
PF00071   Ras        + More
PF00004   AAA
PF08542   Rep_fac_C
PF00566   RabGAP-TBC
PF11830   DUF3350
Interpro
IPR001806   Small_GTPase        + More
IPR027417   P-loop_NTPase       
IPR005225   Small_GTP-bd_dom       
IPR003578   Small_GTPase_Rho       
IPR003593   AAA+_ATPase       
IPR003959   ATPase_AAA_core       
IPR013748   Rep_factorC_C       
IPR008921   DNA_pol3_clamp-load_cplx_C       
IPR035969   Rab-GTPase_TBC_sf       
IPR021785   DUF3350       
IPR006020   PTB/PI_dom       
IPR000195   Rab-GTPase-TBC_dom       
SUPFAM
SSF52540   SSF52540        + More
SSF48019   SSF48019       
SSF47923   SSF47923       
PDB
5FI0     E-value=3.4457e-51,     Score=505

Ontologies

Topology

Subcellular location
Cell membrane  
Length:
183
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.0846700000000001
Exp number, first 60 AAs:
0.0817
Total prob of N-in:
0.37806
outside
1  -  183
 
 

Population Genetic Test Statistics

Pi
248.419672
Theta
174.607887
Tajima's D
1.320692
CLR
2.101432
CSRT
0.747862606869657
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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