SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO09059
Pre Gene Modal
BGIBMGA007504
Annotation
hypothetical_protein_KGM_15885_[Danaus_plexippus]
Full name
Gamma-tubulin complex component      
Location in the cell
Nuclear   Reliability : 3.828
 

Sequence

CDS
ATGGCTAGTAATTATGAAACTTTAGACGATGAAATCAAAGAACTTCTTGAAAACTATAAACACAAAAGGTCCAGTGTGTACGAACCTTGTAAAATAGGGAATATTAAGGAATGTCTAATCGGATTAAGAGAGGAACTAGGTGTTTTTAACATAAGCTATTTATTTAATCCATACAATGATATCGAAGATGAAATTTTGCTACCAGGATCTCTAGTGACGCTCATTAATTCTGTATGGACATTGCTACATTATCATAAGAATGCAGTACAAAAGGTAGAAAAGTTAATGGAGCAAAACCATATCCTTGAACAGAACAATAAGCAATTGAACTCCTTTGTAGATAAACTGAAAGAAAAAGTAAGCTCCGAAAAGAGTGAGACTAGAGCGTGTGTTGTGTCTGCTCAAAGAATAGCAGACCATTCAGATGTAATGTTACAAACATTAACAGAAACCAAAGCAAAACTACTTCAGGTGACCAAGCAGAAAAAAGCGAACGAAAGAAATTATCACAATGAAATAACTAGACTTAAGATTCAAAATGAAAAAATGTTGGACAGGTTGAGAAACAGAGAACCTCCATGCACTGAAACCTGCGACAGTACTTTAATACGCTTGAAGGAAAAAGATAAACAACATCGCACAATGATATCTAAATTAGAGAAGAACAATCAAGATTTATTACACGAACTTTTGAATCTAAAGGAAGCTCTCCTTTTGGAAGGACTCAATGATATGAATATAAATAATGATGAACATAAATAA
Protein
MASNYETLDDEIKELLENYKHKRSSVYEPCKIGNIKECLIGLREELGVFNISYLFNPYNDIEDEILLPGSLVTLINSVWTLLHYHKNAVQKVEKLMEQNHILEQNNKQLNSFVDKLKEKVSSEKSETRACVVSAQRIADHSDVMLQTLTETKAKLLQVTKQKKANERNYHNEITRLKIQNEKMLDRLRNREPPCTETCDSTLIRLKEKDKQHRTMISKLEKNNQDLLHELLNLKEALLLEGLNDMNINNDEHK

Summary

Similarity
Belongs to the TUBGCP family.
Pfam
PF00071   Ras        + More
PF04130   GCP_C_terminal
PF17681   GCP_N_terminal
PF11559   ADIP
Interpro
IPR027417   P-loop_NTPase        + More
IPR020849   Small_GTPase_Ras-type       
IPR001806   Small_GTPase       
IPR007259   GCP       
IPR041470   GCP_N       
IPR040457   GCP_C       
IPR042241   GCP_C_sf       
IPR021622   Afadin/alpha-actinin-bd       
SUPFAM
SSF52540   SSF52540       
Gene 3D

Ontologies

Topology

Subcellular location
  
Length:
253
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
1.44613
Exp number, first 60 AAs:
0.00224
Total prob of N-in:
0.06472
outside
1  -  253
 
 

Population Genetic Test Statistics

Pi
216.138932
Theta
171.507129
Tajima's D
1.316102
CLR
0.130295
CSRT
0.740962951852407
Interpretation
Uncertain
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