Gene

KWMTBOMO09056

Annotation

Nipped-B-like_B?_partial_[Charadrius_vociferus]

Location

Bomo_Chr15(-):10665742-10667104      View in EpiBrowser

Full name

Segregation and condensation protein A      

Location in the cell

PlasmaMembrane   Reliability : 1.191

CDS

ATGGAAAAACTTCGAACTGTTGTCTATAGACCGAAACAACTGTTCCAACTGTTTCAACTATTCCACAATATTCCATATGTTGCTTTGTTCCATTCCACAGTAAACAATCAGAAACGAAACAGTTTGGAACAAGCTCTTTTCCTTTTTCACGCTGTTGTATTGGAACAGGCTGTTATATTGGAACAGGCTGTTATATTGGAACAGGCTGTTATATTGGAACAGGCTGTTATATTGGAACAGGCTGTTATATTGGAACAGGCTGTTATATTGGAACAGGCTGTTATATTGGAACAGGCTGTTATATTGGAACAGGCTGTTATATTGGAACAGGCTGTTATATTGGAACAGGCTGTTATATTGGAACAGGCTGTTATATTGGAACAGGCTGTTATATTGGAACAGGCTGTTATATTGGAACAGGCTGTTATATTGGAACAGGCTGTTATATTGGAACAGGCTGTTATATTGGAACAGACTGTTATATTGGAACAGGCTGTTATATTGGAACAGGCGCGCCAAGCACTCGAGCACGATTTTGATATGATTCAGTCATGCATTTTACAATGA

Protein

MEKLRTVVYRPKQLFQLFQLFHNIPYVALFHSTVNNQKRNSLEQALFLFHAVVLEQAVILEQAVILEQAVILEQAVILEQAVILEQAVILEQAVILEQAVILEQAVILEQAVILEQAVILEQAVILEQAVILEQAVILEQAVILEQAVILEQAVILEQTVILEQAVILEQARQALEHDFDMIQSCILQ

Description

Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves.

Subunit

Component of a cohesin-like complex composed of ScpA, ScpB and the Smc homodimer, in which ScpA and ScpB bind to the head domain of Smc. The presence of the three proteins is required for the association of the complex with DNA.

Similarity

Belongs to the G-protein coupled receptor 1 family.
Belongs to the ScpA family.
Belongs to the FtsK/SpoIIIE/SftA family.

Uniprot

A0A3P9IH22   A0A3B3IIL8   A0A2G9Q3R5   A0A2G9Q2M0   A0A2G9RQ27   A0A2G9RQD8   + More
A0A3P9KP54   A0A401QAH2   A0A0S7XEN3   A0A1C3KM18   T5ACE5   A0A3Q2KVH0   A0A1D3JLW9   A0A0F6YI49   A0A226DZB4   A0A373IPU8   A0A2U4A0M9   A0A341BK10   A0A1A8VRJ7   A0A0P1AS03   A0A2Y9T0H9   A0A401QGU0   A0A1C6IGX8   A0A402BQE1   A0A373IQ02   A0A2C9JRK8   A0A3N9N8Y1   A0A415YBG1   A0A0J7EPP0   C3G9C4   V4AZ99   A0A072NUU7   M2SV50  

Pubmed

17554307    30297745    25922666    19892987    15562597    26555390    + More
22645259    23254933    23236275    23357949   

EMBL

KZ369747    PIO09811.1    PIO09810.1    KV934707    PIO29967.1    PIO29965.1    + More
BFAA01023399    GCB82375.1    LJNC01000006    KPJ60902.1    LT594493    SBT75029.1    KE653302    EQK99507.1    LT594626    SBT87500.1    CP011125    AKF06595.1    LNIX01000008    OXA50825.1    QTUT01000018    RGF14798.1    FLQW01000296    SBS83085.1    CCYD01000810    CEG44215.1    BFAA01088132    GCB84648.1    FMGX01000004    FMHB01000003    SCJ65307.1    SCJ68863.1    BIFV01000007    GCE33583.1    RGF14858.1    RQOH01000305    RQV99738.1    QUDC01000005    RHO49101.1    LABO01000040    KMP94141.1    ACNG01000100    EEM69590.1    KB201180    ESO99051.1    AMGV01000132    KEF50773.1    KB445650    EMD60682.1   

Proteomes

UP000265200    UP000001038    UP000265180    UP000288216    UP000051457    UP000002281    + More
UP000034883    UP000198287    UP000264662    UP000245320    UP000252040    UP000054928    UP000248484    UP000287175    UP000076420    UP000280740    UP000284899    UP000035945    UP000001380    UP000030746    UP000027920    UP000016934   

Pfam

PF00132   Hexapep        + More
PF08772   NOB1_Zn_bind
PF17146   PIN_6
PF00001   7tm_1
PF02616   SMC_ScpA
PF00612   IQ
PF01381   HTH_3
PF03448   MgtE_N
PF01580   FtsK_SpoIIIE
PF17854   FtsK_alpha
PF09397   FtsK_gamma

Interpro

IPR011004   Trimer_LpxA-like_sf        + More
IPR001451   Hexapep       
IPR018357   Hexapep_transf_CS       
IPR039907   NOB1       
IPR014881   NOB1_Zn-bd       
IPR036283   NOB1_Zf-like_sf       
IPR033411   Ribonuclease_PIN       
IPR017452   GPCR_Rhodpsn_7TM       
IPR000276   GPCR_Rhodpsn       
IPR027669   P2Y8_rcpt       
IPR003768   ScpA       
IPR000048   IQ_motif_EF-hand-BS       
IPR023299   ATPase_P-typ_cyto_dom_N       
IPR023214   HAD_sf       
IPR011990   TPR-like_helical_dom_sf       
IPR010982   Lambda_DNA-bd_dom_sf       
IPR001387   Cro/C1-type_HTH       
IPR038787   SRRM5       
IPR006668   Mg_transptr_MgtE_intracell_dom       
IPR027417   P-loop_NTPase       
IPR018541   Ftsk_gamma       
IPR002543   FtsK_dom       
IPR041027   FtsK_alpha       
IPR036388   WH-like_DNA-bd_sf       
IPR036390   WH_DNA-bd_sf       

SUPFAM

SSF51161   SSF51161        + More
SSF144206   SSF144206       
SSF48452   SSF48452       
SSF47413   SSF47413       
SSF81660   SSF81660       
SSF46785   SSF46785       
SSF52540   SSF52540       

Gene 3D

3.30.40.120     3.40.1110.10     3.40.50.1000     1.25.40.10     1.10.10.10    

CDD

cd15368  7tmA_P2Y8
cd00093  HTH_XRE

ProteinModelPortal

A0A3P9IH22   A0A3B3IIL8   A0A2G9Q3R5   A0A2G9Q2M0   A0A2G9RQ27   A0A2G9RQD8   + More
A0A3P9KP54   A0A401QAH2   A0A0S7XEN3   A0A1C3KM18   T5ACE5   A0A3Q2KVH0   A0A1D3JLW9   A0A0F6YI49   A0A226DZB4   A0A373IPU8   A0A2U4A0M9   A0A341BK10   A0A1A8VRJ7   A0A0P1AS03   A0A2Y9T0H9   A0A401QGU0   A0A1C6IGX8   A0A402BQE1   A0A373IQ02   A0A2C9JRK8   A0A3N9N8Y1   A0A415YBG1   A0A0J7EPP0   C3G9C4   V4AZ99   A0A072NUU7   M2SV50  

KEGG

NA   

GO

GO:0016740   GO:0016021   GO:0003677   GO:0006352   GO:0004930   GO:0007049   GO:0051301   GO:0007059   GO:0005737   GO:0007051   GO:0000166   GO:0043565   GO:0005524  

PANTHER

PTHR12814   PTHR24232:SF25   PTHR33969   PTHR39414  

Subcellular location

Cytoplasm  

Length:

188

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

1.36014

Exp number, first 60 AAs:

1.2214

Total prob of N-in:

0.31516

outside

1  -  188

 

 

Pi

232.394463

Theta

172.210643

Tajima's D

1.099341

CLR

0.770164

CSRT

0.690915454227289

Interpretation

Uncertain