Gene

KWMTBOMO09052  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA007500

Annotation

PREDICTED:_membrane_protein_TMS1_isoform_X4_[Bombyx_mori]

Location

Bomo_Chr15(+):10595745-10608608      View in EpiBrowser

Location in the cell

PlasmaMembrane   Reliability : 4.861

CDS

ATGGGTGCAGTGTTGGGCCTTTGTTCTGCAGCACAGCTGGCGTGTTGCTGTGGCAGCACTGCTTGTTCACTATGTTGTTCAGCATGTCCATCTTGCACCAATTCCACCTCCTCCCGTCTTATGTATGCACTAATGCTGGTGCTGGTAACTATTGTGTGCTGTATCACTTTAGCTCCCGGATTACATAATGAACTTCAAAAGCTACCGTTTTGTACAAATGCAACTGATAGTACAGTCACGGGACTATTACCAGGAAATTTCAAGGTAGATTGTGATGAAGCGGTTGGATATTTGGCTGTTTATAGAATTACATTTGCAACATGTCTCTTCTTTCTGCTAATGGCGTTAATTATGATTGGTGTCAAATCTTCTAAAGATCCAAGAGCTGGAATTCAAAATGGTTTTTGGGCCATCAAATATTTATTGGTTATTGGTGGCATTATCGGAGCATTCTTCATCCCAGGAGGTCAATTTGCTTCGACATGGATGGTGTTTGGAATGATTGGAGGCTTCTGCTACATTGTTATCCAACTCATTCTTATCATTGATTTTGCACATTCCTGGGCTGAAATATGGGTTTCTAAATACGAAGAGACAGAATCGAAGGGATGGTATGCAGCACTACTGATTTCAATGCTGACCTGTTTTGCTCTCACCTTGACTGGCATCGTTCTGCTTTATGTTTATTACACTAAGTCCAACGGATGCGACCTATCGAAGTTCTTCATTTCGTTCAATCTGATCCTGGTGGTGGTCGCCAGCGGCGTGTCGATCTTGCCTTCGGTTCAAGAGCACCAGCCGCGCTCCGGTCTCCTGCAGTCGTCAGTCGTGTCCCTCTACGTCATGTACCTCACCTGGTCCGCGCTCTCCAACGCCTCCAAGGAATGCAACGGACTCACCGGTACATCGGATGATTCATCCTTCGACAAGCAGCGAATAATCGGGCTGTGCATTTGGGTGTGCAGCGTTCTGTACTCAAGCATAAGGACCGCCTCCGCCTCGTCCAAGATAACAATGTCCGAACACATTCTGGCCAAAGAAGGATCTACAGAGGGTGCCGACGGGGGAGAGGCGGGGCAGGGCGGGAACGAGCCTAAGGTGTTCGACAACGAAGGAGACTCCGTCGCCTACTCGTGGAGCTTCTTCCATATAATGTTCGCGCTCGCAACGCTCTACGTCATGATGACCCTCACCAATTGGTTCAACCCGAATTCGCAGCTGGCGAACGAGAATATCGCATCAATGTGGGTCAAAATAACCTCCTCTTGGATGTGCATCGGTCTCTACATTTGGACCCTGGTCGCGCCGGCCATTTTTCCGGACAGGGAATTCAATTAA

Protein

MGAVLGLCSAAQLACCCGSTACSLCCSACPSCTNSTSSRLMYALMLVLVTIVCCITLAPGLHNELQKLPFCTNATDSTVTGLLPGNFKVDCDEAVGYLAVYRITFATCLFFLLMALIMIGVKSSKDPRAGIQNGFWAIKYLLVIGGIIGAFFIPGGQFASTWMVFGMIGGFCYIVIQLILIIDFAHSWAEIWVSKYEETESKGWYAALLISMLTCFALTLTGIVLLYVYYTKSNGCDLSKFFISFNLILVVVASGVSILPSVQEHQPRSGLLQSSVVSLYVMYLTWSALSNASKECNGLTGTSDDSSFDKQRIIGLCIWVCSVLYSSIRTASASSKITMSEHILAKEGSTEGADGGEAGQGGNEPKVFDNEGDSVAYSWSFFHIMFALATLYVMMTLTNWFNPNSQLANENIASMWVKITSSWMCIGLYIWTLVAPAIFPDREFN

Uniprot

Q1EPR6   H9JDA3   A0A212EP62   A0A3S2M3L8   I4DMX0   A0A2H1VGQ6   + More
A0A2A4J948   A0A2A4J8R5   A0A194PKZ2   A0A1E1W065   A0A1E1WDA2   A0A194R823   A0A224XNJ2   A0A224XPW2   R4FQD9   R4WJW1   A0A1B6KNF6   A0A1B6KJ62   A0A2A3E5U1   S4PY72   A0A0P4YLB8   A0A0L7QTQ8   V5G546   V9IAE7   A0A151WFJ8   A0A0P6E686   A0A0N7ZRP4   E9GGM1   A0A0P5G256   D6WM99   A0A0P5BVM3   A0A0P4ZY60   A0A0P5AEH2   A0A1B6EFW0   A0A0P5FXH3   A0A0A9YL29   A0A0A9YGY6   E2A1E8   A0A146LIL8   A0A0N8A4R2   A0A0P5U1R4   A0A0N8CFM6   A0A0P4WJC5   A0A067RBH1   A0A1B6DBU4   A0A0P5ABE3   K7IVS6   A0A0P6GYX3   A0A232F6G5   A0A0P5KID5   A0A087ZZY0   A0A310SK24   A0A195BY20   A0A0T6BGL3   A0A0P4ZGG7   A0A0N8ASC0   A0A151J6B9   A0A154PKP0   A0A195CFR8   A0A158NC97   E2B333   A0A0P5SMA2   A0A3L8E2I9   A0A1D2N529   A0A1Y1LMQ1   A0A0P5TF40   A0A195F934   A0A182UXU3   A0A1Y1LMP8   Q7QCD1   A0A1L8D977   A0A182XAU2   A0A182HSN9   A0A026W3M2   A0A182UK35   A0A1L8D941   Q178Z6   A0A182HF32   A0A1L8D9H3   Q178Z7   A0A0K8TPS3   A0A0P5YV45   A0A336MQY6   A0A0N0BJC8   A0A182K669   A0A023FM69   A0A1W4WPN1   A0A1E1XDQ4   A0A182NRK6   A0A0P5AFV7   A0A0P4WID7   A0A1W4WPM8   A0A1Q3G4J3   A0A182PZQ6   A0A1W4X0F4   A0A1Q3G4K5   G3MM96   A0A1W7R9K5   A0A023GNA1   A0A023FZR5  

Pubmed

19121390    22118469    22651552    26354079    23691247    23622113    + More
21292972    18362917    19820115    25401762    20798317    26823975    24845553    20075255    28648823    21347285    30249741    27289101    28004739    12364791    14747013    17210077    24508170    17510324    26483478    26369729    28503490    22216098   

EMBL

AB262075    BAE95628.1    BABH01030174    BABH01030175    AGBW02013542    OWR43247.1    + More
RSAL01000046    RVE50549.1    AK402638    BAM19260.1    ODYU01002486    SOQ40029.1    NWSH01002582    PCG67923.1    PCG67924.1    KQ459602    KPI93399.1    GDQN01010722    GDQN01000100    JAT80332.1    JAT90954.1    GDQN01009455    GDQN01006147    JAT81599.1    JAT84907.1    KQ460615    KPJ13654.1    GFTR01006274    JAW10152.1    GFTR01006387    JAW10039.1    ACPB03002116    GAHY01000449    JAA77061.1    AK417900    BAN21115.1    GEBQ01026988    JAT12989.1    GEBQ01028501    JAT11476.1    KZ288387    PBC26431.1    GAIX01003793    JAA88767.1    GDIP01227179    JAI96222.1    KQ414740    KOC62038.1    GALX01003281    JAB65185.1    JR037136    JR037137    JR037138    AEY57602.1    AEY57603.1    AEY57604.1    KQ983211    KYQ46624.1    GDIP01112655    GDIQ01067419    LRGB01000725    JAL91059.1    JAN27318.1    KZS16305.1    GDIP01219185    GDIQ01249053    GDIP01131442    JAJ04217.1    JAK02672.1    GL732543    EFX81463.1    GDIQ01247700    JAK04025.1    KQ971343    EFA03337.1    GDIP01194492    JAJ28910.1    GDIP01206988    JAJ16414.1    GDIP01205087    JAJ18315.1    GEDC01028454    GEDC01000528    JAS08844.1    JAS36770.1    GDIQ01249052    JAK02673.1    GBHO01011279    GBHO01011278    GBRD01009467    JAG32325.1    JAG32326.1    JAG56357.1    GBHO01011280    GBHO01011277    GBRD01003549    JAG32324.1    JAG32327.1    JAG62272.1    GL435766    EFN72621.1    GDHC01010626    JAQ08003.1    GDIP01182641    JAJ40761.1    GDIP01120949    JAL82765.1    GDIP01136439    JAL67275.1    GDRN01068473    JAI64188.1    KK852751    KDR17149.1    GEDC01014131    GEDC01012568    JAS23167.1    JAS24730.1    GDIP01201484    JAJ21918.1    GDIQ01037306    JAN57431.1    NNAY01000843    OXU26235.1    GDIQ01184916    JAK66809.1    KQ764286    OAD54556.1    KQ976396    KYM92836.1    LJIG01000458    KRT86482.1    GDIP01217430    JAJ05972.1    GDIQ01247699    GDIP01131441    JAK04026.1    JAL72273.1    KQ979863    KYN18771.1    KQ434934    KZC11868.1    KQ977873    KYM99146.1    ADTU01011771    GL445285    EFN89882.1    GDIP01137992    JAL65722.1    QOIP01000001    RLU26673.1    LJIJ01000214    ODN00331.1    GEZM01051461    JAV74913.1    GDIP01128781    JAL74933.1    KQ981727    KYN37115.1    GEZM01051462    JAV74909.1    AAAB01008859    EAA08075.5    GFDF01011076    JAV03008.1    APCN01000311    KK107468    EZA50206.1    GFDF01011078    JAV03006.1    CH477355    EAT42822.1    JXUM01133374    JXUM01133375    JXUM01133376    KQ567972    KXJ69211.1    GFDF01011077    JAV03007.1    EAT42823.1    GDAI01001475    JAI16128.1    GDIP01052971    JAM50744.1    UFQT01002172    SSX32842.1    KQ435719    KOX78938.1    GBBK01001710    JAC22772.1    GFAC01001828    JAT97360.1    GDIP01200235    JAJ23167.1    GDIP01254828    JAI68573.1    GFDL01000324    JAV34721.1    AXCN02000002    GFDL01000321    JAV34724.1    JO842997    AEO34614.1    GFAH01000559    JAV47830.1    GBBM01000097    JAC35321.1    GBBL01001140    JAC26180.1   

Proteomes

UP000005204    UP000007151    UP000283053    UP000218220    UP000053268    UP000053240    + More
UP000015103    UP000242457    UP000053825    UP000075809    UP000076858    UP000000305    UP000007266    UP000000311    UP000027135    UP000002358    UP000215335    UP000005203    UP000078540    UP000078492    UP000076502    UP000078542    UP000005205    UP000008237    UP000279307    UP000094527    UP000078541    UP000075903    UP000007062    UP000076407    UP000075840    UP000053097    UP000075902    UP000008820    UP000069940    UP000249989    UP000053105    UP000075881    UP000192223    UP000075884    UP000075886   

PRIDE

Q1EPR6    H9JDA3   

Pfam

PF03348   Serinc

Interpro

IPR029559   Tms1-like        + More
IPR005016   TDE1/TMS       
IPR029554   SERINC2       
IPR029557   Serinc1/3       

ProteinModelPortal

Q1EPR6   H9JDA3   A0A212EP62   A0A3S2M3L8   I4DMX0   A0A2H1VGQ6   + More
A0A2A4J948   A0A2A4J8R5   A0A194PKZ2   A0A1E1W065   A0A1E1WDA2   A0A194R823   A0A224XNJ2   A0A224XPW2   R4FQD9   R4WJW1   A0A1B6KNF6   A0A1B6KJ62   A0A2A3E5U1   S4PY72   A0A0P4YLB8   A0A0L7QTQ8   V5G546   V9IAE7   A0A151WFJ8   A0A0P6E686   A0A0N7ZRP4   E9GGM1   A0A0P5G256   D6WM99   A0A0P5BVM3   A0A0P4ZY60   A0A0P5AEH2   A0A1B6EFW0   A0A0P5FXH3   A0A0A9YL29   A0A0A9YGY6   E2A1E8   A0A146LIL8   A0A0N8A4R2   A0A0P5U1R4   A0A0N8CFM6   A0A0P4WJC5   A0A067RBH1   A0A1B6DBU4   A0A0P5ABE3   K7IVS6   A0A0P6GYX3   A0A232F6G5   A0A0P5KID5   A0A087ZZY0   A0A310SK24   A0A195BY20   A0A0T6BGL3   A0A0P4ZGG7   A0A0N8ASC0   A0A151J6B9   A0A154PKP0   A0A195CFR8   A0A158NC97   E2B333   A0A0P5SMA2   A0A3L8E2I9   A0A1D2N529   A0A1Y1LMQ1   A0A0P5TF40   A0A195F934   A0A182UXU3   A0A1Y1LMP8   Q7QCD1   A0A1L8D977   A0A182XAU2   A0A182HSN9   A0A026W3M2   A0A182UK35   A0A1L8D941   Q178Z6   A0A182HF32   A0A1L8D9H3   Q178Z7   A0A0K8TPS3   A0A0P5YV45   A0A336MQY6   A0A0N0BJC8   A0A182K669   A0A023FM69   A0A1W4WPN1   A0A1E1XDQ4   A0A182NRK6   A0A0P5AFV7   A0A0P4WID7   A0A1W4WPM8   A0A1Q3G4J3   A0A182PZQ6   A0A1W4X0F4   A0A1Q3G4K5   G3MM96   A0A1W7R9K5   A0A023GNA1   A0A023FZR5  

KEGG

733066    no KO assigned | (RefSeq) Tms1; membrane protein TMS1

GO

GO:0016021   GO:0006665   GO:0006658   GO:0016020   GO:0005524   GO:0046872   GO:0004075   GO:0042626   GO:0005254   GO:0006811   GO:0016876   GO:0043039  

PANTHER

PTHR10383   PTHR10383:SF9   PTHR10383:SF22   PTHR10383:SF15  

Length:

445

Number of predicted TMHs:

10

Exp number of AAs in TMHs:

213.58289

Exp number, first 60 AAs:

25.09585

Total prob of N-in:

0.19401

POSSIBLE N-term signal

sequence

outside

1  -  39

TMhelix

40  -  62

inside

63  -  97

TMhelix

98  -  120

outside

121  -  134

TMhelix

135  -  157

inside

158  -  163

TMhelix

164  -  186

outside

187  -  205

TMhelix

206  -  228

inside

229  -  240

TMhelix

241  -  260

outside

261  -  269

TMhelix

270  -  292

inside

293  -  312

TMhelix

313  -  332

outside

333  -  378

TMhelix

379  -  401

inside

402  -  421

TMhelix

422  -  439

outside

440  -  445

 

 

Pi

29.847911

Theta

18.76681

Tajima's D

1.049858

CLR

0.626315

CSRT

0.684115794210289

Interpretation

Uncertain