Gene

KWMTBOMO09048

Annotation

endonuclease_and_reverse_transcriptase-like_protein_[Bombyx_mori]

Location

Bomo_Chr15(+):10486435-10487785      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 2.375 Nuclear   Reliability : 1.99

CDS

ATGACCATTAACGCTGGCGTTCCACAAGGTTCGGTGCTCTCCCCCACGCTTTTCATCCTGTATATCAATGACATGCTGTCTATTGATGGCATGCATTGCTATGCGGATGACAGCACGGGTGATGCGCGATATATCGGCCATCAGAGTCTCTCTCGGAGCGCGGTGCAAGAGAGACGATCAAAACTTGTGTCTGAAGTGGAGAACTCTCTGGGGCGAGTCTCCGAATGGGGTGAATTGAACTTGGTTCAATTCAACCCGATAAAGACACAAGTTTGCGCGTTCACTGCGAAGAAGGACCCCTTTGTCATGGCGCCGCAATTCCAAGGAGTATCCCTGCAACCTTCCGAGAGTATTGGGATACTTGGGGTCGACATTTCGAGCGATGTCCAGTTTCGGAGTCATTTGGAAGGCAAAGCCAAGTTGGCGTCCAAAATGCTGGGAGTCCTCAACAGAGCGAAGCGGTACTTCACGCCTGGACAAAGGCTTTTGCTTTATAAAGCACAAGTCCGGCCTCGCGTGGAGTACTGCTCCCATCTCTGGGCCGGGGCTCCCAAATACCAGCTTCTTCCATTTGACTCCATACAGAGGAGGGCCGTTCGGATTGTCGATAATCCCATTCTCACGGATCGTTTGGAGCCTCTGGGTCTGCGGAGGGACTTCGGTTCCCTCTGTATTTTGTACCGTATGTTCCATGGGGAGTGCTCTGAGGAATTGTTCGAGATGATACCGGCATCTCGTTTTTACCATCGCACCGCCCGCCACCGGAGTAGAGTTCATCCATACTACCTGGAGCCTCTGCGGTCATCCACAGTGCGTTTCCAGAGATCTTTTTTGCCACGTACCATCCGGCTATGGAATGAGCTCCCCTCCACGGTGTTTCCTGAGCGCTATGACATGTCCTTCTTCAAACGAGGCTTGTGGAGAGTATTAAGCAGTAGGCAGCGGCTTGGCTCTGCCCTGGCATTGCTGAAGTCCATGGGCGACGGTAACCACTCACCATCAGGTGGGCCGTATGCTCGTCTGCCTACAAGGGCAATAAAAAAAAAAAAAAAAAAAAAAAAAACAATTCAACATATTTATAAGATGCTAAAATAG

Protein

MTINAGVPQGSVLSPTLFILYINDMLSIDGMHCYADDSTGDARYIGHQSLSRSAVQERRSKLVSEVENSLGRVSEWGELNLVQFNPIKTQVCAFTAKKDPFVMAPQFQGVSLQPSESIGILGVDISSDVQFRSHLEGKAKLASKMLGVLNRAKRYFTPGQRLLLYKAQVRPRVEYCSHLWAGAPKYQLLPFDSIQRRAVRIVDNPILTDRLEPLGLRRDFGSLCILYRMFHGECSEELFEMIPASRFYHRTARHRSRVHPYYLEPLRSSTVRFQRSFLPRTIRLWNELPSTVFPERYDMSFFKRGLWRVLSSRQRLGSALALLKSMGDGNHSPSGGPYARLPTRAIKKKKKKKKTIQHIYKMLK

Uniprot

Q6UV17   A0A437B9X9   A0A3S2LP03   A0A3S2KYN2   A0A3S2LQP1   A0A437BF96   + More
A0A3S2NMS5   A0A437B259   A0A3S2NHP4   A0A437ARG3   A0A3S2NMX8   A0A2H1VFZ3   A0A437BUJ7   A0A0P4VXU0   A0A3D5S1K1   A0A3S2TFH4   A0A1E1XGQ7   A0A131Y4I8   A0A147BU27   A0A131Y4Q4   A0A1E1XNL1   A0A131XQR9   A0A090XE26   A0A1E1XN74   A0A1E1X2T1   A0A1E1XNW6   A0A147BJQ0   A0A147BJ69   A0A147BNQ9   A0A0P4VVV8   A0A131Y3E3   A0A131XT39   A0A1E1X2P5   A0A147BQ97   A0A131XRE4   A0A2G8KET5   A0A1G4M3N1   A0A0P4VTV9   A0A2B4RTL1   A0A147BNC9   A0A147BJZ1   A0A2H9T4Y5   A0A2H9T3F5   A0A1G4M5I2   A0A147BMA3   A0A147BBR8   A0A1E1XPS6   A0A2H9T4F1   A0A2H9T4Q5   A0A147BLD9   A0A1E1XGC7   A0A0K8RPQ6   A0A1E1XVU2   A0A2I0UC10   A0A1E1XM20   A0A1E1X2R3   A0A147BB29   A0A2B4RFN8   W4ZIH4   A0A2H9T5P0   A0A147BKN8   A0A147BPB7   A0A2S6A1F0  

Pubmed

30148503    28503490    29209593    25970599    29652888    29023486    + More
29150518   

EMBL

AY359886    AAQ57129.1    RSAL01000109    RVE47192.1    RSAL01002067    RVE40593.1    + More
RSAL01000487    RVE41561.1    RSAL01000422    RVE41792.1    RSAL01000072    RVE49051.1    RSAL01000002    RVE54942.1    RSAL01000210    RVE44225.1    RSAL01003136    RVE40332.1    RSAL01002827    RVE40408.1    RVE55041.1    RVE55094.1    ODYU01002162    SOQ39302.1    RSAL01000007    RVE54134.1    GDRN01105059    JAI57791.1    DPOC01000269    HCX22453.1    RSAL01000193    RVE44603.1    GFAC01000919    JAT98269.1    GEFM01002394    JAP73402.1    GEGO01001118    JAR94286.1    GEFM01002324    JAP73472.1    GFAA01002514    JAU00921.1    GEFM01006417    JAP69379.1    GBIH01002577    JAC92133.1    GFAA01002657    JAU00778.1    GFAC01005646    JAT93542.1    GFAA01002479    JAU00956.1    GEGO01004433    JAR90971.1    GEGO01004630    JAR90774.1    GEGO01003312    JAR92092.1    GDRN01111277    JAI56804.1    GEFM01002419    JAP73377.1    GEFM01006421    JAP69375.1    GFAC01005665    JAT93523.1    GEGO01002473    JAR92931.1    GEFM01005882    JAP69914.1    MRZV01000639    PIK46517.1    FLMD02000154    SCV66010.1    GDRN01111334    JAI56796.1    LSMT01000297    PFX20951.1    GEGO01003111    JAR92293.1    GEGO01004295    JAR91109.1    NSIT01000218    PJE78268.1    NSIT01000412    PJE77717.1    FLMD02000280    SCV66640.1    GEGO01003518    JAR91886.1    GEGO01007187    JAR88217.1    GFAA01002385    JAU01050.1    NSIT01000271    PJE78081.1    NSIT01000239    PJE78188.1    GEGO01003794    JAR91610.1    GFAC01000861    JAT98327.1    GADI01001229    JAA72579.1    GFAA01000066    JAU03369.1    KZ505886    PKU43598.1    GFAA01003161    JAU00274.1    GFAC01005670    JAT93518.1    GEGO01007438    JAR87966.1    LSMT01000588    PFX15986.1    AAGJ04095885    NSIT01000164    PJE78524.1    GEGO01004056    JAR91348.1    GEGO01002794    JAR92610.1    PSZC01000087    PPJ25136.1   

Proteomes

UP000283053    UP000230750    UP000225706    UP000007110    UP000239874   

PRIDE

Q6UV17   

Pfam

PF00078   RVT_1        + More
PF14529   Exo_endo_phos_2
PF01585   G-patch
PF00458   WHEP-TRS
PF03372   Exo_endo_phos
PF01425   Amidase

Interpro

IPR000477   RT_dom        + More
IPR005135   Endo/exonuclease/phosphatase       
IPR036691   Endo/exonu/phosph_ase_sf       
IPR012677   Nucleotide-bd_a/b_plait_sf       
IPR000504   RRM_dom       
IPR034653   SPF45_RRM       
IPR003954   RRM_dom_euk       
IPR000467   G_patch_dom       
IPR040052   RBM17       
IPR035979   RBD_domain_sf       
IPR028082   Peripla_BP_I       
IPR036291   NAD(P)-bd_dom_sf       
IPR002347   SDR_fam       
IPR020904   Sc_DH/Rdtase_CS       
IPR000738   WHEP-TRS_dom       
IPR009068   S15_NS1_RNA-bd       
IPR000120   Amidase       
IPR036928   AS_sf       
IPR023631   Amidase_dom       

SUPFAM

SSF56219   SSF56219        + More
SSF54928   SSF54928       
SSF53822   SSF53822       
SSF51735   SSF51735       
SSF47060   SSF47060       
SSF75304   SSF75304       

Gene 3D

3.60.10.10     3.30.70.330     3.90.1300.10    

CDD

cd12647  RRM_UHM_SPF45

ProteinModelPortal

Q6UV17   A0A437B9X9   A0A3S2LP03   A0A3S2KYN2   A0A3S2LQP1   A0A437BF96   + More
A0A3S2NMS5   A0A437B259   A0A3S2NHP4   A0A437ARG3   A0A3S2NMX8   A0A2H1VFZ3   A0A437BUJ7   A0A0P4VXU0   A0A3D5S1K1   A0A3S2TFH4   A0A1E1XGQ7   A0A131Y4I8   A0A147BU27   A0A131Y4Q4   A0A1E1XNL1   A0A131XQR9   A0A090XE26   A0A1E1XN74   A0A1E1X2T1   A0A1E1XNW6   A0A147BJQ0   A0A147BJ69   A0A147BNQ9   A0A0P4VVV8   A0A131Y3E3   A0A131XT39   A0A1E1X2P5   A0A147BQ97   A0A131XRE4   A0A2G8KET5   A0A1G4M3N1   A0A0P4VTV9   A0A2B4RTL1   A0A147BNC9   A0A147BJZ1   A0A2H9T4Y5   A0A2H9T3F5   A0A1G4M5I2   A0A147BMA3   A0A147BBR8   A0A1E1XPS6   A0A2H9T4F1   A0A2H9T4Q5   A0A147BLD9   A0A1E1XGC7   A0A0K8RPQ6   A0A1E1XVU2   A0A2I0UC10   A0A1E1XM20   A0A1E1X2R3   A0A147BB29   A0A2B4RFN8   W4ZIH4   A0A2H9T5P0   A0A147BKN8   A0A147BPB7   A0A2S6A1F0  

KEGG

105842661    no KO assigned | (RefSeq) uncharacterized LOC105842661

GO

GO:0003964   GO:0004519   GO:0003723   GO:0016021   GO:0004040  

PANTHER

PTHR13288   PTHR11895  

Length:

364

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.702699999999999

Exp number, first 60 AAs:

0.70242

Total prob of N-in:

0.04347

outside

1  -  364

 

 

Pi

35.113878

Theta

39.462428

Tajima's D

-0.96403

CLR

0

CSRT

0.141192940352982

Interpretation

Uncertain