Gene

KWMTBOMO09047

Pre Gene Modal

BGIBMGA007588

Annotation

PREDICTED:_cyclic_nucleotide-gated_cation_channel_alpha-3_[Papilio_polytes]

Location

Bomo_Chr15(-):10371882-10428580      View in EpiBrowser

Location in the cell

PlasmaMembrane   Reliability : 3.415

CDS

ATGATGACGTGCCGGCTGGGCTCGCGGAGGCTGGGCGGATCTCGCGGTTCGCTGCAAGCTGGCACCACGTGCTCCGCCGCCAGCGAGCTGGATCTCTCCTCACGATCTCGACGGGCGCACAAAGCCAGGTTAAAACTACTGAGCGCCAGCGGCGAGGCTCCGTTGTTGGGGGGCTGGCGGAGCACGCCGCACACGCCGCACGCGTCAGCGACACCGGCGCCGCACCACTCACACAATCACCTCGCACCGCAGCACTGCAACGGCACTGATAGTGGCAGCAGAGGAGGTCTCCGACGTCGCTCCACCTACGCAAGCGGCCGACTGCGCTCTGGGCCGCACTGGTCGTTTGTTTTTGACCCCGCCGGCCGATTGTGCTACTATTGGTCCATGGTCGTCTCGCTAGCCTTCCTTTATAACCTATGGGTTATAGTCTACAGGTTCGCTTTTCAAGAAATAAATGGTGAAACATTAATAGTGTGGTTTTGCCTCGACTATTTTTCGGACTTCCTATATTTGGCGGACATTTTGTTTCATTTTCGGACGGGATATCTAGAAGATGGCGTGCTACAAACGGATGCGGCGAAGCTGAGAGCGCATTACATGAACTCTACCACGTTCTATATAGACTGTCTGTGTTTGTTGCCGTTGGACTTTCTTTATCTATCCATCGGCTTTAATTCAATATTACGTTCGTTCCGATTAGTGAAAATATATCGTTTTTGGGCGTTTATGGACCGAACTGAGCGACACACAAACTACCCTAACTTGTTTAGGTCAACAAGTTTAATTCATTATTTGTTAGTGATATTCCATTGGAACGGGTGCTTGTACCATATAATATATAAAAACAATGGTTTCGGTAGTAAAAACTGGGTGTATCACGATACGGAAACGGCCGATGTAGTGAAACAGTATCTTCAAAGTTATTATTGGTGCACATTGGCGCTCACGACAATCGGTGATTTGCCGCGACCACGCAGCAAAGGGGAATATGTGTTCGTGATAGCGCAGCTCTTGTTTGGATTGCTCCTGTTCGCCACGGTGCTTGGTCACGTAGCCAACATCGTCACCTCAGTCAGCACGGCCAGAAAAGAATTCCAGGCTAAACTGGATGGGGTGAAGACCTACATGCGCATGAGGAGAGTACCAACGCATCTGCAAGTGAAGGTGATCAAATGGTTCGACTATCTCTGGCTCACCCAGAAGTGTTCCGACGAGGAGAAAGCGGTTTCGTGTCTGCCGGACAAACTAAAGGCGGAGATAGCTATCAACGTACATCTAGATACCCTGAAAAGGGTCGAAATATTTCAAAATACGGAGGCGGGGTTTTTATGCGAGCTAGTGCTGAGGCTTCGACCGGTACTATTCTCTCCCGGTGACTACATCTGTAGAAAAGGTGAAGTCGGCAAGGAGATGTACATAGTGAACCGAGGGAAACTGCAGGTCGTAGGCGACAACGGCAAGACCGTGCTGGCAACACTTAAGGCGGGTTCTTATTTTGGCGAAATTTCCATTCTGAACATGGGCACGGCAGGTAAACAACTTGGCAACCGTCGGACAGCATCGGTGCGCTCCGTCGGCTACTCGGACCTGTTCGTACTTAGCAAGAAGGACATGTGGGACGTGCTCAAGGAGTATCCCGCAGCGAGAGTGCGCCTCGAGGCCATCGCCGTCAAGAGACTCGAGAAATACAAAAAAGCACCACTCGAAAAAGTGGCAATGGGTCGGTGCCAGTCGACGCCCGGACTCGTGGAGACGAGCGGGCGCATACCCATCGAGGAGATGCAGCTTCCGGCCGCACCGCTGCCGCCGCCTCTGCACTCCTCACACCCGCCTTCTTATCGGGACCAGCTTTATAGTTCGTCAGTAAGTCCTCTTCGTGTAGCATCCCCGGTGGCGTCGTGTGCGTCAAGCGCTCGTAGTAGCGCGGCGGGGGGTGGAGGTGGGGGTGCGGGCGGGGGTGCTCCCCGCGCATTCATCGACTCTCATGAGGTGCTCGAGAGTGAGATTAAGCGACTGCGCGAGCGACTCTACACTGTCGAAACCGAAAATGCCGCAATGTCCGCGAAGCTGAGCCAGCAGCAGTGGGAAGTTGACCAAAGGTTGCAAGAAATAGAGATGCAGATCTGCGGCGGGAGCTCGCTGAGCTCTCAGGAGGAGAACGAGAGGAACCGGGAGAGCATTATTTAA

Protein

MMTCRLGSRRLGGSRGSLQAGTTCSAASELDLSSRSRRAHKARLKLLSASGEAPLLGGWRSTPHTPHASATPAPHHSHNHLAPQHCNGTDSGSRGGLRRRSTYASGRLRSGPHWSFVFDPAGRLCYYWSMVVSLAFLYNLWVIVYRFAFQEINGETLIVWFCLDYFSDFLYLADILFHFRTGYLEDGVLQTDAAKLRAHYMNSTTFYIDCLCLLPLDFLYLSIGFNSILRSFRLVKIYRFWAFMDRTERHTNYPNLFRSTSLIHYLLVIFHWNGCLYHIIYKNNGFGSKNWVYHDTETADVVKQYLQSYYWCTLALTTIGDLPRPRSKGEYVFVIAQLLFGLLLFATVLGHVANIVTSVSTARKEFQAKLDGVKTYMRMRRVPTHLQVKVIKWFDYLWLTQKCSDEEKAVSCLPDKLKAEIAINVHLDTLKRVEIFQNTEAGFLCELVLRLRPVLFSPGDYICRKGEVGKEMYIVNRGKLQVVGDNGKTVLATLKAGSYFGEISILNMGTAGKQLGNRRTASVRSVGYSDLFVLSKKDMWDVLKEYPAARVRLEAIAVKRLEKYKKAPLEKVAMGRCQSTPGLVETSGRIPIEEMQLPAAPLPPPLHSSHPPSYRDQLYSSSVSPLRVASPVASCASSARSSAAGGGGGGAGGGAPRAFIDSHEVLESEIKRLRERLYTVETENAAMSAKLSQQQWEVDQRLQEIEMQICGGSSLSSQEENERNRESII

Uniprot

A0A437BJH8   A0A194R749   A0A2A4K786   A0A084WRS6   K7IVS0   Q16TJ9   + More
A0NBL7   A0A1S4FQ22   A0A158NCQ2   A0A2C9GPL5   E2C283   A0A1J1J623   W5JVL8   A0A2S2QS19   D7EK12   A0A2S2QES4   A0A1B3P9B9   A0A0P6HN57   A0A3Q0INR3   A0A0F7VK59  

Pubmed

26354079    24438588    20075255    17510324    12364791    14747013    + More
17210077    21347285    20798317    20920257    23761445    18362917    19820115   

EMBL

RSAL01000046    RVE50553.1    KQ460615    KPJ13648.1    NWSH01000073    PCG79939.1    + More
ATLV01026187    ATLV01026188    ATLV01026189    KE525407    KFB52920.1    CH477647    EAT37837.1    AAAB01008807    EAU77684.3    ADTU01012009    ADTU01012010    ADTU01012011    ADTU01012012    ADTU01012013    ADTU01012014    ADTU01012015    ADTU01012016    ADTU01012017    ADTU01012018    APCN01003705    APCN01003706    APCN01003707    GL452088    EFN77946.1    CVRI01000070    CRL07220.1    ADMH02000350    ETN66879.1    GGMS01011315    MBY80518.1    KQ971342    EFA12954.2    GGMS01007023    MBY76226.1    KU716097    AOG14381.1    GDIQ01016047    JAN78690.1    LN830706    CFW94215.1   

Proteomes

UP000283053    UP000053240    UP000218220    UP000030765    UP000002358    UP000008820    + More
UP000007062    UP000005205    UP000075840    UP000008237    UP000183832    UP000000673    UP000007266    UP000079169   

Pfam

PF00027   cNMP_binding        + More
PF00520   Ion_trans
PF07885   Ion_trans_2

Interpro

IPR014710   RmlC-like_jellyroll        + More
IPR018488   cNMP-bd_CS       
IPR005821   Ion_trans_dom       
IPR018490   cNMP-bd-like       
IPR000595   cNMP-bd_dom       
IPR013099   K_chnl_dom       
IPR003938   K_chnl_volt-dep_EAG/ELK/ERG       

SUPFAM

SSF51206   SSF51206       

Gene 3D

2.60.120.10    

CDD

cd00038  CAP_ED

ProteinModelPortal

A0A437BJH8   A0A194R749   A0A2A4K786   A0A084WRS6   K7IVS0   Q16TJ9   + More
A0NBL7   A0A1S4FQ22   A0A158NCQ2   A0A2C9GPL5   E2C283   A0A1J1J623   W5JVL8   A0A2S2QS19   D7EK12   A0A2S2QES4   A0A1B3P9B9   A0A0P6HN57   A0A3Q0INR3   A0A0F7VK59  

PDB

5H3O     E-value=1.54742e-100,     Score=938

KEGG

101739015    K04950 cyclic nucleotide gated channel alpha 3 | (RefSeq) cyclic nucleotide-gated cation channel alp

GO

GO:0016021   GO:0030553   GO:0005223   GO:0005222   GO:0005249   GO:0034765   GO:0005216   GO:0005267   GO:0005244  

Length:

729

Number of predicted TMHs:

5

Exp number of AAs in TMHs:

106.53257

Exp number, first 60 AAs:

0.13794

Total prob of N-in:

0.26684

outside

1  -  125

TMhelix

126  -  145

inside

146  -  156

TMhelix

157  -  179

outside

180  -  206

TMhelix

207  -  229

inside

230  -  261

TMhelix

262  -  281

outside

282  -  332

TMhelix

333  -  355

inside

356  -  729

 

 

Pi

216.547797

Theta

156.668639

Tajima's D

0.445212

CLR

0.824809

CSRT

0.499275036248188

Interpretation

Uncertain