Gene

KWMTBOMO09034  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA007594

Annotation

PREDICTED:_putative_ATP-dependent_RNA_helicase_Pl10_[Amyelois_transitella]

Location

Bomo_Chr15(-):10125857-10134770      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 4.121

CDS

ATGAGTAATGTTACCAACCAAAATGGAACAGGTCTAGAGCAGCAGCTTGCTGGTCTGGACTTGCAGCCCCAGGCTCCTAAGAGTACTGGTCGCTACATACCCCCGCATCTGCGTAGGCAGTTGCAGGCAACCTCTGATCAAGGGGAAGAGTCTAAGCGCTCAAGCTTAGACACCCGTCCTAGTGAGTCACGGGACAACCGTTCATCATTCGGAGGCAGCTCTAGAGGCTACGACCGTGGTGGTCGGCGCGACGATCGTGATCGTGACCGCGAACGTGATTACGATCGCGGATACGAAGCGCGACACCAGCGCAGGGACCGCGGTCGAGACAGTGGATCTCAGAATGGCGAACCAGAGCGTTGGAATGAATCCGAGAAATGGAATGATCGTGAACGCGAACGGGACCGACGCGGGCCTCGCGACGTGCGACGTGAGGAGGATTATGAACCACCGGCACCACGGAATGACCGCTGGAAAGAGCCGGAGCCAAGAGCTGAAGAGCGTTCCAATTCACGCTGGCCTTCTGACGATGTGCGCCGAACTAGATCTCGCAAAGACGAGAATGATTGGACAGTACCGTTACCTCGCGATGAACGACAGGAACTATTGCTGTTCGGCACTGGCAACACCGGGATCAATTTCTCCAAATACGAGGATATACCGGTTGAGGCCAGCGGAGACCGCGTACCAGACTGCATCACCAGTTTTGAGGATGTTAACCTGACAGAACTAATGCGGACAAATATATCTCTCGCTCGCTATGACAAGCCGACGCCGGTACAGAAGTATGCGATTCCGATTATTTTGTCACGTAGAGACGTGATGGCGTGTGCACAGACGGGATCTGGAAAAACCGCAGCCTTTCTTGTTCCCATACTTAACCAAATGTATGAAGCAGGACCTGTGAAACACATGGGACCTTATAATAAACGGAAACAATATCCTTTGGGCTTGGTGTTAGCCCCAACGCGAGAGCTCGCCACCCAAATTTTTGATGAAGCTAGAAAATTTGCCTATCGATCACGAGTCCGACCCTGTGTGGTGTATGGAGGCTCACCTATTAATGATCAGTTCCGTGAATTAGAGTCAGGATGTCATCTGTTAGTAGCCACTCCTGGGCGTTTGGTAGACATGCTGGCTCGTGGCAGAGTTGCATTGGATCACTGTCGCCATCTTGTACTCGACGAAGCCGACCGCATGTTGGACATGGGTTTTGAGCCACAGATCCGTAAGATTGTAGAGTGCCACACGATGCCCAAGACTGGCGAACGTCAAACTCTTATGTTTTCTGCCACTTTCCCAAAACAGATTCAACTTTTGGCTCAGGATTTCTTATACAATTATGTGTTCCTTGCTGTTGGACGTGTAGGCTCAACGTCAGAAAATATTACACAGAAGGTTGTTTGGGTAGACGAAATGGACAAGCGTTCCTTTTTATTGGATTTACTAAATGCATCAAACTTGCTACAACGTGCACGTCCCGAAGAGGATCAACTTATACTTGTGTTTGTGGAAACTAAGAAAGGTGCGGATCAACTAGAAGAATATTTATATTCCCAAGGCTACCCGGTAACATCGATCCATGGAGACCGTAACCAACGTGAACGTGAAGATGCTTTACGACGTTTTCGAACTGGACAAACACCAATACTTGTGGCAACAGCTGTCGCTGCAAGAGGCCTAGACATACCGCACGTACGTCACGTAATAAATTTTGATCTACCATCTGACGTGGAAGAATACGTCCATCGTATCGGTCGTACAGGTCGTATGGGTAACCTCGGTGTGGCTACTTCCTTCTTTAATGACACAAACCGTGGTTTGGCACGAGACCTCGTCGAACTGCTCGTCGAGGCTAAACAAGACGTACCTAATTGGCTTACTAGCACCGCAGCTGACGGACGGCTTGGCGGCGGCGGTCGGCGCACTGGCTCTCGTTCTGGGAATGCTCGTTACGGCGGTAGCGGCTTCGGCTCAAGGGACTTCCGTACACAACCTCGTCAGGCGGCACGTTCTGCAGGAGCTGGCGGTATCGGTTCCGGCTTTGGCTATGACGTGGGCTCATATGGTGGTAACTATGGCGGGTCGTACGGCGGAGGAGGCGGAGGCGGTAACAGCGGAGGTCCCGACTGGTGGGATTCCTAA

Protein

MSNVTNQNGTGLEQQLAGLDLQPQAPKSTGRYIPPHLRRQLQATSDQGEESKRSSLDTRPSESRDNRSSFGGSSRGYDRGGRRDDRDRDRERDYDRGYEARHQRRDRGRDSGSQNGEPERWNESEKWNDRERERDRRGPRDVRREEDYEPPAPRNDRWKEPEPRAEERSNSRWPSDDVRRTRSRKDENDWTVPLPRDERQELLLFGTGNTGINFSKYEDIPVEASGDRVPDCITSFEDVNLTELMRTNISLARYDKPTPVQKYAIPIILSRRDVMACAQTGSGKTAAFLVPILNQMYEAGPVKHMGPYNKRKQYPLGLVLAPTRELATQIFDEARKFAYRSRVRPCVVYGGSPINDQFRELESGCHLLVATPGRLVDMLARGRVALDHCRHLVLDEADRMLDMGFEPQIRKIVECHTMPKTGERQTLMFSATFPKQIQLLAQDFLYNYVFLAVGRVGSTSENITQKVVWVDEMDKRSFLLDLLNASNLLQRARPEEDQLILVFVETKKGADQLEEYLYSQGYPVTSIHGDRNQREREDALRRFRTGQTPILVATAVAARGLDIPHVRHVINFDLPSDVEEYVHRIGRTGRMGNLGVATSFFNDTNRGLARDLVELLVEAKQDVPNWLTSTAADGRLGGGGRRTGSRSGNARYGGSGFGSRDFRTQPRQAARSAGAGGIGSGFGYDVGSYGGNYGGSYGGGGGGGNSGGPDWWDS

Similarity

Belongs to the DEAD box helicase family.

Uniprot

A0A2A4K7F1   A0A2A4K6T1   A0A212EUG3   A0A437BJM2   A0A194PQH6   A0A194R8R4   + More
H9JDJ7   A0A0L7LDT1   A0A0T6B0A8   A0A2H1W3F8   A0A0C9RAD5   A0A2J7RT20   A0A067R0G3   E9HD16   A0A310SAB9   A0A1B6M6Z0   A0A0L7QZA0   A0A1B6M1Y3   A0A0P5G8S5   A0A0P5G0W9   A0A0P5FWM3   A0A0P5UIY8   A0A0N8DD80   A0A0P5DLD9   A0A0P6I4V5   A0A0P5JG94   A0A0P5FSJ2   A0A0P5YZE3   A0A0N8DVH9   A0A2A3E6Y0   A0A0P5RNR6   A0A0P6BLR4   A0A0P6CZT9   V9IJF1   A0A0B4J2N5   A0A0N7ZQW4   A0A0P5MFB6   A0A0P5TAG6   A0A0P5S0Z4   A0A0P5IHA1   A0A0N7ZJE4   A0A0N8DC50   A0A2A3E8C1   A0A0P5G8K0   A0A0P5WC41   A0A0P5HM30   A0A0P5T0E3   A0A1B6FKZ8   A0A1B6I237   A0A0P5Q1M2   A0A154P1K4   A0A195FTR0   F4WAH3   J9K0U9   A0A158NVN2   A0A224X8R8   A0A195CB22   A0A151X5N7   A0A1B6C3L3   A0A0B4J2R6   A0A0P4W3R8   T1IWF1   A0A444SNF3   A0A1A9W9C9   A0A336MFD9   A0A0R3NP78   B5DWF0   A0A3R7PL42   A0A3B0JLC3   U5EU41   B0L0X1   A0A1A9VVY0   W8B905   B4G457   A0A433TP95  

Pubmed

22118469    26354079    19121390    26227816    24845553    21292972    + More
21719571    21347285    20075255    27129103    15632085    17994087    24495485   

EMBL

NWSH01000073    PCG79946.1    PCG79947.1    AGBW02012390    OWR45135.1    RSAL01000046    + More
RVE50559.1    KQ459602    KPI93385.1    KQ460615    KPJ13640.1    BABH01030221    JTDY01001556    KOB73544.1    LJIG01016384    KRT80762.1    ODYU01006090    SOQ47630.1    GBYB01003873    GBYB01013404    JAG73640.1    JAG83171.1    NEVH01000249    PNF43980.1    KK853131    KDR10924.1    GL732622    EFX70372.1    KQ762360    OAD55924.1    GEBQ01008313    JAT31664.1    KQ414681    KOC63923.1    GEBQ01010055    JAT29922.1    GDIQ01252053    JAJ99671.1    GDIQ01249041    JAK02684.1    GDIQ01250641    JAK01084.1    GDIP01112230    JAL91484.1    GDIP01045207    JAM58508.1    GDIP01160732    JAJ62670.1    GDIQ01026257    JAN68480.1    GDIQ01200394    JAK51331.1    GDIQ01252052    JAJ99672.1    GDIP01052899    JAM50816.1    GDIP01158430    GDIQ01087836    JAJ64972.1    JAN06901.1    KZ288347    PBC27523.1    GDIQ01116990    JAL34736.1    GDIP01016224    JAM87491.1    GDIP01221426    GDIQ01086149    JAJ01976.1    JAN08588.1    JR047615    AEY60459.1    GDIP01221425    JAJ01977.1    GDIQ01164620    JAK87105.1    GDIP01132934    JAL70780.1    GDIQ01100494    JAL51232.1    GDIP01186518    GDIQ01221345    LRGB01000626    JAJ36884.1    JAK30380.1    KZS17634.1    GDIP01239585    JAI83816.1    GDIQ01227590    GDIP01048247    JAK24135.1    JAM55468.1    PBC27522.1    GDIQ01245786    JAK05939.1    GDIP01088140    JAM15575.1    GDIQ01227589    GDIP01048246    JAK24136.1    JAM55469.1    GDIP01132933    JAL70781.1    GECZ01018907    JAS50862.1    GECU01026715    JAS80991.1    GDIQ01122776    JAL28950.1    KQ434786    KZC05224.1    KQ981281    KYN43279.1    GL888048    EGI68856.1    ABLF02014985    ADTU01027277    GFTR01007669    JAW08757.1    KQ978072    KYM97308.1    KQ982515    KYQ55578.1    GEDC01029473    JAS07825.1    GDKW01000536    JAI56059.1    JH431613    SAUD01029383    RXG54927.1    UFQS01001052    UFQT01001052    SSX08728.1    SSX28640.1    CM000070    KRT00518.1    EDY68141.1    QCYY01001784    ROT75338.1    OUUW01000007    SPP83114.1    GANO01002493    JAB57378.1    EF206694    ABQ00072.1    GAMC01008820    GAMC01008818    GAMC01008817    GAMC01008815    JAB97735.1    CH479179    EDW25095.1    RQTK01000245    RUS83385.1   

Proteomes

UP000218220    UP000007151    UP000283053    UP000053268    UP000053240    UP000005204    + More
UP000037510    UP000235965    UP000027135    UP000000305    UP000053825    UP000242457    UP000005203    UP000076858    UP000076502    UP000078541    UP000007755    UP000007819    UP000005205    UP000078542    UP000075809    UP000002358    UP000288706    UP000091820    UP000001819    UP000283509    UP000268350    UP000078200    UP000008744    UP000271974   

PRIDE

H9JDJ7   

Pfam

PF00270   DEAD        + More
PF00271   Helicase_C
PF00181   Ribosomal_L2
PF03947   Ribosomal_L2_C

Interpro

IPR011545   DEAD/DEAH_box_helicase_dom        + More
IPR014014   RNA_helicase_DEAD_Q_motif       
IPR000629   RNA-helicase_DEAD-box_CS       
IPR014001   Helicase_ATP-bd       
IPR001650   Helicase_C       
IPR027417   P-loop_NTPase       
IPR014722   Rib_L2_dom2       
IPR023672   Ribosomal_L2_arc       
IPR012340   NA-bd_OB-fold       
IPR022669   Ribosomal_L2_C       
IPR014726   Ribosomal_L2_dom3       
IPR022666   Rbsml_prot_L2_RNA-bd_dom       
IPR008991   Translation_prot_SH3-like_sf       
IPR022671   Ribosomal_L2_CS       
IPR002171   Ribosomal_L2       

SUPFAM

SSF52540   SSF52540        + More
SSF50104   SSF50104       
SSF50249   SSF50249       

Gene 3D

2.30.30.30     4.10.950.10    

CDD

cd00079  HELICc

ProteinModelPortal

A0A2A4K7F1   A0A2A4K6T1   A0A212EUG3   A0A437BJM2   A0A194PQH6   A0A194R8R4   + More
H9JDJ7   A0A0L7LDT1   A0A0T6B0A8   A0A2H1W3F8   A0A0C9RAD5   A0A2J7RT20   A0A067R0G3   E9HD16   A0A310SAB9   A0A1B6M6Z0   A0A0L7QZA0   A0A1B6M1Y3   A0A0P5G8S5   A0A0P5G0W9   A0A0P5FWM3   A0A0P5UIY8   A0A0N8DD80   A0A0P5DLD9   A0A0P6I4V5   A0A0P5JG94   A0A0P5FSJ2   A0A0P5YZE3   A0A0N8DVH9   A0A2A3E6Y0   A0A0P5RNR6   A0A0P6BLR4   A0A0P6CZT9   V9IJF1   A0A0B4J2N5   A0A0N7ZQW4   A0A0P5MFB6   A0A0P5TAG6   A0A0P5S0Z4   A0A0P5IHA1   A0A0N7ZJE4   A0A0N8DC50   A0A2A3E8C1   A0A0P5G8K0   A0A0P5WC41   A0A0P5HM30   A0A0P5T0E3   A0A1B6FKZ8   A0A1B6I237   A0A0P5Q1M2   A0A154P1K4   A0A195FTR0   F4WAH3   J9K0U9   A0A158NVN2   A0A224X8R8   A0A195CB22   A0A151X5N7   A0A1B6C3L3   A0A0B4J2R6   A0A0P4W3R8   T1IWF1   A0A444SNF3   A0A1A9W9C9   A0A336MFD9   A0A0R3NP78   B5DWF0   A0A3R7PL42   A0A3B0JLC3   U5EU41   B0L0X1   A0A1A9VVY0   W8B905   B4G457   A0A433TP95  

PDB

6CZ5     E-value=2.25949e-179,     Score=1617

KEGG

692361    K11594 ATP-dependent RNA helicase DDX3X [EC:3.6.4.13] | (RefSeq) ATP-dependent RNA helicase DDX3X

GO

GO:0003676   GO:0004386   GO:0005524   GO:0016021   GO:0015934   GO:0003723   GO:0003735   GO:0006412   GO:0006810   GO:0042626   GO:0005254   GO:0006811   GO:0016020   GO:0016876   GO:0043039  

Length:

714

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.0164

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00079

outside

1  -  714

 

 

Pi

189.780415

Theta

178.75084

Tajima's D

-0.706363

CLR

288.188575

CSRT

0.195640217989101

Interpretation

Uncertain