SGID The Silkworm Genome Information Database
Gene
KWMTBOMO09014
Annotation
PREDICTED:_zinc_finger_CCHC_domain-containing_protein_24-like_[Papilio_polytes]
Location in the cell
Nuclear   Reliability : 2.637
 

Sequence

CDS
ATGGGTTGCTTTTGGTCCAGTGAGTGTGATTCTCGGGAACGATGTCAGCATTGCAATAGAAGGGCTGTTAATAATTTGATTGTCGTTAATCAAGTTTGTGAAATTTGTACATACAATTCATCGAAACAAACGAGTACACCACATAGTTCGGGAAGGAACAAGCCGTGCTTCGGTAAATACATTTGTGTTTGCGGAAATGCTTGGAGCAGTCGCAAATCATGGCCCCAAAAATATCAAATCTGTACACGATGCCGCAAGAAGGTGTACGCTCGCACTCAAAGACCCTTACGTTCTTCTGACTGGACAAATAATAAGAATTCTCGAGATCATCTGAGTAATTTGTGTCAGATGTGTCAAGAATTGGGATACGATTGTGGAAAGTTATTTGAGATCTAA
Protein
MGCFWSSECDSRERCQHCNRRAVNNLIVVNQVCEICTYNSSKQTSTPHSSGRNKPCFGKYICVCGNAWSSRKSWPQKYQICTRCRKKVYARTQRPLRSSDWTNNKNSRDHLSNLCQMCQELGYDCGKLFEI

Summary

Pfam
PF17180   zf-3CxxC_2        + More
PF13696   zf-CCHC_2
Interpro
IPR027377   Znf-3CxxC        + More
IPR033446   Zcchc24_Znf-3CxxC       
IPR025829   Zn_knuckle_CX2CX3GHX4C       
IPR036875   Znf_CCHC_sf       
IPR001878   Znf_CCHC       
SUPFAM
SSF57756   SSF57756       

Ontologies

Topology

Length:
131
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00302
Exp number, first 60 AAs:
0.00289
Total prob of N-in:
0.12019
outside
1  -  131
 
 

Population Genetic Test Statistics

Pi
182.407014
Theta
190.582517
Tajima's D
-0.453927
CLR
111.768305
CSRT
0.251187440627969
Interpretation
Uncertain
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