Gene

KWMTBOMO09012

Pre Gene Modal

BGIBMGA007774

Annotation

PREDICTED:_decapping_nuclease_DXO_homolog_isoform_X1_[Bombyx_mori]

Location

Bomo_Chr15(-):9680402-9686535      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 2.716

CDS

ATGCAAATTCAGCCAGAACTTCATGTGAATGCTAGCATTTACTCAAATTCATTTCCTCGATTTGATCGTCCAAAAGTGATAGGATATATTGGTCTCCACAATCTAAAATTTTGTAAAACTTTACGAGACAAAAAAGTGTGTTTTGATTTGAATTTGCATTTAGACAAAGTAAAGCGTAAACCAGTAGATCGGGACGTTAAATTAGATGATTTGTTGCATTTCTTACTTACACAAGAGCACAGATTAAACTTTCCAATACAGAAGACTATTAACGATGCCCCGATTCACTGTTACCGGGGTCTCATGACATGTGTTGCGTGTACACCGTATGAGAATACAGAACCATGGAAAATAGTTACGATTTTACATAAAGGTAACATATACTTATGCGCGAGAGACACTGATGAAAAGAAACATAGAAATCGTAATATGTCTGAGAAAGATAAGCAGTTCACATCATGGGGCTTTAAATTTGAACAATTCATGACATCAGATCATCCTGAAGCCAATCCCAATCCTGATGTACCTGTAGATGAAACAGAAGAATTCTCATTGGTTTTAACTACGAAATTGAACAATCACAAAATAATTTATGGAGCAGAAATGGATGCGATCAGATGTGACAAAGTAGTGGTCCCATCCCCACCATCAAATGATGCTGATCCTCAAACTGTTTTAGAGTATCTGTGTGATAAGGAATTCATTGAGTTAAAAACAAATAGGCATATAGAAAATAATAAACAAGAGATAAATTTCAGGAGGTACAAATGCAAAAAATGGTGGTGTCAATCATTTCTTGTTGGAGTAGACACTATATTATGTGGATTTCGAAATGATAAAGGAATAGTTGAAGAGTTAAAAGTGTTCACAGTAAAAGAATTATCAAAACAAAGTAAGAAATATTGGAGTGGCAATGTTTGCTTTAATTTCTTAGATACATTCTTTACTTACGTAAAAAGATGTCTCATTAGAAGAGTGAAACAAAAATACGGAGAAAAAGCATTGCAAAATTTACATAACTTACCATTAGTTAGTTTACTTTTTGAATGGAATCCTGAAGCACATGTACAAGTTAACGAAGCTTACACATATGAAGATGATCCTATATTACCCGAATTATTTATTAAAAACTATGGTTCTAGAGAACTAATTTGA

Protein

MQIQPELHVNASIYSNSFPRFDRPKVIGYIGLHNLKFCKTLRDKKVCFDLNLHLDKVKRKPVDRDVKLDDLLHFLLTQEHRLNFPIQKTINDAPIHCYRGLMTCVACTPYENTEPWKIVTILHKGNIYLCARDTDEKKHRNRNMSEKDKQFTSWGFKFEQFMTSDHPEANPNPDVPVDETEEFSLVLTTKLNNHKIIYGAEMDAIRCDKVVVPSPPSNDADPQTVLEYLCDKEFIELKTNRHIENNKQEINFRRYKCKKWWCQSFLVGVDTILCGFRNDKGIVEELKVFTVKELSKQSKKYWSGNVCFNFLDTFFTYVKRCLIRRVKQKYGEKALQNLHNLPLVSLLFEWNPEAHVQVNEAYTYEDDPILPELFIKNYGSRELI

Uniprot

H9JE27   A0A2H1WAP8   A0A2A4K888   A0A3S2LI78   A0A194PJ65   A0A212EQS8   + More
A0A0L7KJT6   A0A194RCI3   A0A1B6KVL7   A0A067QWW2   A0A1B6JUI1   A0A336L828   A0A0K8TLE2   A0A1B6F1N5   T1JH46   K7IS87   A0A232EKE7   A0A0C9R455   A0A2L2YAR4   A0A2R5L4Z7   Q16FZ8   A0A1Z5L9X8   A0A2P6KPG1   A0A2A4JYK6   A0A1B6CHS4   A0A0N8C8X0   A0A0P5TUU9   A0A0P5B7S5   A0A0N8EA56   A0A0P5UIX0   A0A0P5WYJ8   A0A0P5BGW0   A0A0P5N8R2   A0A0P6CNV9   A0A0A1XCC1   A0A0P5NWW2   A0A2H1WYL6   A0A0N7ZLI1   A0A182FGK5   A0A224YYS4   K1P9Q1   A0A182LV93   A0A0D8XPD7   A0A1X7VSW6   A0A2G8L1B5   A0A210PUF9   A0A182K164   A0A1V9XZA8   A0A0P5MWC2   A0A238BWF2   A0A1D2MCG6   W8BFN3   V3Z2F1   A0A2A4JYW8   A0A1S0U135   A0A182E1D3   A0A1S3K0L4   C3Y9L1  

Pubmed

19121390    26354079    22118469    26227816    24845553    26369729    + More
20075255    28648823    26561354    17510324    28528879    25830018    28797301    22992520    26856411    29023486    28812685    28327890    27289101    24495485    23254933    22919073    18563158   

EMBL

BABH01002508    ODYU01007404    SOQ50138.1    NWSH01000076    PCG79882.1    RSAL01000109    + More
RVE47220.1    KQ459602    KPI93367.1    AGBW02013218    OWR43856.1    JTDY01009362    KOB63602.1    KQ460615    KPJ13616.1    GEBQ01024512    JAT15465.1    KK852921    KDR13807.1    GECU01004842    JAT02865.1    UFQS01001980    UFQT01001980    SSX12847.1    SSX32289.1    GDAI01002459    JAI15144.1    GECZ01025607    JAS44162.1    JH432222    NNAY01003801    OXU18836.1    GBYB01011084    JAG80851.1    IAAA01010104    LAA05077.1    GGLE01000425    MBY04551.1    CH478354    EAT33164.1    GFJQ02002747    JAW04223.1    MWRG01007554    PRD28203.1    NWSH01000412    PCG76573.1    GEDC01024375    JAS12923.1    GDIQ01103299    JAL48427.1    GDIP01121688    JAL82026.1    GDIP01189140    JAJ34262.1    GDIQ01046820    JAN47917.1    GDIP01112249    JAL91465.1    GDIP01091849    JAM11866.1    GDIP01199786    JAJ23616.1    GDIQ01145631    JAL06095.1    GDIP01011785    JAM91930.1    GBXI01006184    JAD08108.1    GDIQ01141042    JAL10684.1    ODYU01012016    SOQ58092.1    GDIP01233689    JAI89712.1    GFPF01010939    MAA22085.1    JH818588    EKC20487.1    AXCM01002771    KN716355    KJH46395.1    MRZV01000266    PIK54047.1    NEDP02005488    OWF40092.1    MNPL01001759    OQR78837.1    GDIQ01150230    JAL01496.1    KZ269999    OZC08908.1    LJIJ01001858    ODM90670.1    GAMC01006430    JAC00126.1    KB203412    ESO84783.1    PCG76572.1    JH712118    EFO22715.2    UYRW01000242    VDK64876.1    GG666492    EEN63267.1   

Proteomes

UP000005204    UP000218220    UP000283053    UP000053268    UP000007151    UP000037510    + More
UP000053240    UP000027135    UP000002358    UP000215335    UP000008820    UP000069272    UP000005408    UP000075883    UP000053766    UP000007879    UP000230750    UP000242188    UP000075881    UP000192247    UP000094527    UP000030746    UP000077448    UP000271087    UP000085678    UP000001554   

PRIDE

H9JE27   

Pfam

PF08652   RAI1

Interpro

IPR013961   RAI1        + More
IPR039039   RAI1-like_fam       

ProteinModelPortal

H9JE27   A0A2H1WAP8   A0A2A4K888   A0A3S2LI78   A0A194PJ65   A0A212EQS8   + More
A0A0L7KJT6   A0A194RCI3   A0A1B6KVL7   A0A067QWW2   A0A1B6JUI1   A0A336L828   A0A0K8TLE2   A0A1B6F1N5   T1JH46   K7IS87   A0A232EKE7   A0A0C9R455   A0A2L2YAR4   A0A2R5L4Z7   Q16FZ8   A0A1Z5L9X8   A0A2P6KPG1   A0A2A4JYK6   A0A1B6CHS4   A0A0N8C8X0   A0A0P5TUU9   A0A0P5B7S5   A0A0N8EA56   A0A0P5UIX0   A0A0P5WYJ8   A0A0P5BGW0   A0A0P5N8R2   A0A0P6CNV9   A0A0A1XCC1   A0A0P5NWW2   A0A2H1WYL6   A0A0N7ZLI1   A0A182FGK5   A0A224YYS4   K1P9Q1   A0A182LV93   A0A0D8XPD7   A0A1X7VSW6   A0A2G8L1B5   A0A210PUF9   A0A182K164   A0A1V9XZA8   A0A0P5MWC2   A0A238BWF2   A0A1D2MCG6   W8BFN3   V3Z2F1   A0A2A4JYW8   A0A1S0U135   A0A182E1D3   A0A1S3K0L4   C3Y9L1  

PDB

6AIX     E-value=5.78908e-30,     Score=326

KEGG

101742694    K14845 RAT1-interacting protein | (RefSeq) decapping nuclease DXO homolog

GO

PANTHER

PTHR12395  

Length:

384

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.26434

Exp number, first 60 AAs:

0.00016

Total prob of N-in:

0.00712

outside

1  -  384

 

 

Pi

222.875401

Theta

172.788434

Tajima's D

1.219448

CLR

1.553553

CSRT

0.714164291785411

Interpretation

Uncertain