SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO09011
Pre Gene Modal
BGIBMGA007759
Annotation
PREDICTED:_uncharacterized_protein_LOC101742841_isoform_X2_[Bombyx_mori]
Location
Bomo_Chr15(+):9657096-9672798      View in EpiBrowser
Transcription factor
RFX
Location in the cell
Nuclear   Reliability : 4.258
 

Sequence

CDS
ATGGAAAGTACCGGTCCATTTCAGCCTTGGGCAAATGACGAAAACTCGAAAGACGTGAAAAGTGAGGCAGAATTAGCGGATGACGCGAAACTTCATCGGGAAGATGTCAATCATCCAAAACATAGGCAAACTGCGTCTTACAATAAAGAAAGTGTCAGTGATTCAACTAACGCTCCAGGATCCTCGAGTGACACTGGCCCCGGTGGTGCTACCGAGGGTACAGAACCCGAGATGGACTCGAACAAAATAACTTCTATGCAACAAATAGTTGAGAACACTCTCAGTCAAGAGGGCCGACAAAGAGTAACTCACTTAATAGAAGCTGTTGAAGCCCTCAGCGGAGCAGAAAAGCTGTTGCTTTATCTGCGGCTACCAACAGGAGTACCACCTCATGATCCTTTAAAACAACCAATCAATCCATTAGGATCAAGAGCTGAACTGAAACAGACTGTTACATGGATACAAACACACTTGGAAGTTGACCCTGATGTCTCATTACCCAAACAGGATGTTTATGATGAATACATAGCTCATTGTATGAGTAGTAACATGAAGCCTCTGTCGACTGCAGACTTCGGTAAAGTCATGAAACAGGTGTACCCGAGCGTACGGCCCAGAAGGCTTGGGACTCGTGGCAATTCTAGATATTGCTATGCGGGTCTTCGAAAAAGGATTAAATTGGAAGTTCCACAATTACCCGATTTAGGTGAATCGTCGAAGGAACCAATTGTGACTTCACGAGAAAATGAAAGGATAGTTTGCGACTGGGCAGAAACAAAATTAGGTGTGAAGTTCGCAAATATTTTAGAATTGTCACAACATTTATTATCACCGGCTCCAAACCTGACCACTCCCGGGCCGCCGTCTACGTCACCACAACCAGCTGTCCCGCAGCCTCATGGATCAGCTACCGCTGATGACGCAACGAGTCGACAATTAATAAAACATTTAAAACGGAAAATGCAGGGTCATGGAACTCCCGGTAGACCCAAAAAGAACAAAGGTCAGGAATTGACTGGAGAGTCATCACCGGCGGCCTCTGGTACGTGCGTCGGACATCATCCGACGTTAAAGCATGAGACGGAGCAGGTACCCGAGACCAGCTACGCATACCAACCGGCATACGTGACGGTGTATGAGCCGCGGCCGCCATACTCCGCTTACGGGGCCCCGCCTCGCGCGCACCCGCTGCCCGCTCTCACTACCCACGAGTATCGCCCCGACCCCTACGCCTTCGAGCCCACGTATGCGCCTCACGACTTGACGCTCCCCATCAACCTCAGTAGCAACGCTTCCCTCGACCTCTCCACCGACCGCGCCGACTGGCACCGTCGCCGTCCACCTGAGCCGCCGCCCCCGCCGCGCCTCCCCCTCCCCGGTAAGAAATTCATCTTGGAGACCTACCAAATCGAAACGGCAGCGCGCGCGCCGCCGCTCCAGCCGGTGTCGGCGCCAACACCGGACGACTTTCCGCGTGCCGAATACTTGCCCAAGAAAATGAGAGCGGCCGAGATCCTCGGCGGGAAGCTGGCCGCGGCCCGACATGTCGTGGCTGTCTCGGAAGCCGGGTCCTCGTCGGCGCCGGTTGCCGAGCCTGCGCCGCTCCGTCCCGCGGGTGCTTTTTTAGAGGATCCAAAAAACTTAACGAGCCGGTCCAAAAGCACCGCCGCGGCGCTGGCCCGGGAGGAACAGGAGGCGGCGAGTCCAACGCGATCGACGAGAGCTCTGGCGTCCATCAAACCGCGCAAAATAAATAGCCGCATGAGATCGAACTCGCCCGATCGTGCGAGGTCACCCGAGAGACCCGCCACTCCCGACTCTTGTTGCGGCCTCGACGGTATCAATATTAGAACTGGCGTGATATGTGAAGAAAAACACTCTGAAATCTTGAACAGAGAACGCGTCATCAGTATCTGCAATATCGATAAACACGACCTGGACGATTATTTGAACGAAGGGAATAGTCAAGAACACGAAGAAGAGCTGCTTCAGTACTTCCACCAACAGCGTGCCGCTCAAGCCGAGGCGGCAGCGGAGATCGACCAGTCTGAAAGAACCGTTATTTTTTTAGAGGCAAGCCAGGACCCGCAAGACGAACACAGTCAAGGAAAAAATGAAAAAATCTCTCAGTTACGCGAACTACTTGCCAAAAATTTGAAAAACCAAAGTGGGTCCAACTCTCAGAATGCAATAAATCAAAACGCTGACCACTCTCAAGCAAATACGAATCAGCAGCAGTCTGCTAAAGTCAGTGATTGCGGCGATGCATTCAAACCGTTAAATGCTGACGAGAGCGATATGAACGGGACGGCCACGACTAAAGCGGTCGAAGTGAATCCCCCGAAACAGTGCCATAGTGTGCCGCATCAAAACGGGTCAACGTTACCTTTTAACAACGATAAGACTTCTAATCAAATGATACCGAATGTCAGCGGTTCCCATCTCTACAATGGGCACTGTCAAAACGAACCTCAGAGCCCCACAACTAGAACTCAGCAATACGACTTTGTTCCGATATCTGAAGGGTGCCATTCGCCGGGACACTTCAGAGGCCAAAGTCCAACTAAAGTACAAAAACAAGTAATCGTTGGGGGTTCTCTTCAAACGTCACCGACATCACACAGCACTGCTGCCAGCCCTTTTGTTAGCCCAAGAAATACACCGGTCCCGAGGTCGAGACTATGCCCTCGGCCCATTCCTAAACACAACGGACGAAAGAGACGCAATCCTTTAACATTGGGTATAAATGACATGTGCTCGAAGCCATTTGCTATTCCAAACGATCAGAAATTTATAACAAAAAACACTACCTGTGATCCCGGTAAATATTGTCAGCCGATGTCTGCTCCGCCTTCGCCAAACATACTGTCGTCCCATTTCAAAAGTCAGTTATATCAATGTAATTCGAGCATTCAGAACGGTAACAATAATAATTTGTGTTTAAATTTCCTACCAAATAACGCTTTCAGAGAACACATAAACGGAGACCCGCCGCTCTCGGCCGATCCTCTGTCCAGCGAAGTCAGTCAATTCTTTCAAGATTCAATGGTGACTTATAGACCGGGCCCAGACGCTTTTAGGTCCCAATCGGTGCCTTTAAAACACGGAATCAACAATATCGGTCTCCTGAGCTACAATAACACGCCCGTCGGCTCGGTGCCGCCTACGCCTGTCCCTAATGAGTTCTGCGACTTTGGTTCGCTGGCTGAAACTTGCGACATATCTAGAGCTGGCCTCAACAGGGAGACTTTAGACAAAATTTACAACGCGATAGACAGTAGCCATGATGTACTTAATCCAGACGGCACAGCGAATCTGCTAAATACGAATGACGGTTTGAGTAACGGCTGCGATTCTATGCCGGGATCGCAAATGTTACCCGATCAACTGACGTCACTTATCCCGGGCGGAGAAGAGCTACTCGACAGCGGAAACCAATTCAACCAATCGTACACGAACGATAGTTCGACAACGGAAAATACAAACAGTATTGACTTAGATTTATCAGAACTAGTTACGGACAAAAGTAAATATTATACGTCTCGCTCGGTACCGAGCACACCGTTGCCTTACAAACGTGCCGCTCCCGGCCTGCAGATAGACTCGCGCCGATCCAGGGATTTGTTTGCCGTAGAGAATTACACTATACCGACGAACGGAATATGCTCCAAGTCGGTGCCATCGACTCCTCAGTTTGCTGAAGACAGGAGTGTTTTTAGCTACAGCAATAGAGATTTCTTGATCAACGGCAACTCTGTTTGTGGGTCGACTCAAGTCCACGAAACCGTAGTCGAAAACGATCAAACGTTGGCTTCGCCGCTTCACGACATGCTACGAGAAGACATATTAGACCCGTTGACGCCCGCGCTGTTGGCCGATCTGGATAAGATTGATGCCGCCCCCTATGTCGATCTCTAG
Protein
MESTGPFQPWANDENSKDVKSEAELADDAKLHREDVNHPKHRQTASYNKESVSDSTNAPGSSSDTGPGGATEGTEPEMDSNKITSMQQIVENTLSQEGRQRVTHLIEAVEALSGAEKLLLYLRLPTGVPPHDPLKQPINPLGSRAELKQTVTWIQTHLEVDPDVSLPKQDVYDEYIAHCMSSNMKPLSTADFGKVMKQVYPSVRPRRLGTRGNSRYCYAGLRKRIKLEVPQLPDLGESSKEPIVTSRENERIVCDWAETKLGVKFANILELSQHLLSPAPNLTTPGPPSTSPQPAVPQPHGSATADDATSRQLIKHLKRKMQGHGTPGRPKKNKGQELTGESSPAASGTCVGHHPTLKHETEQVPETSYAYQPAYVTVYEPRPPYSAYGAPPRAHPLPALTTHEYRPDPYAFEPTYAPHDLTLPINLSSNASLDLSTDRADWHRRRPPEPPPPPRLPLPGKKFILETYQIETAARAPPLQPVSAPTPDDFPRAEYLPKKMRAAEILGGKLAAARHVVAVSEAGSSSAPVAEPAPLRPAGAFLEDPKNLTSRSKSTAAALAREEQEAASPTRSTRALASIKPRKINSRMRSNSPDRARSPERPATPDSCCGLDGINIRTGVICEEKHSEILNRERVISICNIDKHDLDDYLNEGNSQEHEEELLQYFHQQRAAQAEAAAEIDQSERTVIFLEASQDPQDEHSQGKNEKISQLRELLAKNLKNQSGSNSQNAINQNADHSQANTNQQQSAKVSDCGDAFKPLNADESDMNGTATTKAVEVNPPKQCHSVPHQNGSTLPFNNDKTSNQMIPNVSGSHLYNGHCQNEPQSPTTRTQQYDFVPISEGCHSPGHFRGQSPTKVQKQVIVGGSLQTSPTSHSTAASPFVSPRNTPVPRSRLCPRPIPKHNGRKRRNPLTLGINDMCSKPFAIPNDQKFITKNTTCDPGKYCQPMSAPPSPNILSSHFKSQLYQCNSSIQNGNNNNLCLNFLPNNAFREHINGDPPLSADPLSSEVSQFFQDSMVTYRPGPDAFRSQSVPLKHGINNIGLLSYNNTPVGSVPPTPVPNEFCDFGSLAETCDISRAGLNRETLDKIYNAIDSSHDVLNPDGTANLLNTNDGLSNGCDSMPGSQMLPDQLTSLIPGGEELLDSGNQFNQSYTNDSSTTENTNSIDLDLSELVTDKSKYYTSRSVPSTPLPYKRAAPGLQIDSRRSRDLFAVENYTIPTNGICSKSVPSTPQFAEDRSVFSYSNRDFLINGNSVCGSTQVHETVVENDQTLASPLHDMLREDILDPLTPALLADLDKIDAAPYVDL

Summary

Uniprot
H9JE12   A0A194PIW9   A0A194R8P1   A0A212EQV0   A0A0L7KJS6  
Pubmed
19121390    26354079    22118469    26227816   
EMBL
BABH01002510    KQ459602    KPI93366.1    KQ460615    KPJ13615.1    AGBW02013218    + More
OWR43855.1    JTDY01009362    KOB63603.1   
Proteomes
UP000005204    UP000053268    UP000053240    UP000007151    UP000037510   
PRIDE
H9JE12   
Pfam
PF02257   RFX_DNA_binding
Interpro
IPR036388   WH-like_DNA-bd_sf        + More
IPR036390   WH_DNA-bd_sf       
IPR039779   RFX-like       
IPR003150   DNA-bd_RFX       
SUPFAM
SSF46785   SSF46785       
Gene 3D
1.10.10.10    
ProteinModelPortal
H9JE12   A0A194PIW9   A0A194R8P1   A0A212EQV0   A0A0L7KJS6  
PDB
1DP7     E-value=4.78989e-13,     Score=185

Ontologies

KEGG
101742841    no KO assigned | (RefSeq) uncharacterized LOC101742841
GO
GO:0003677   GO:0003700   GO:0006355   GO:0016021   GO:0046872   GO:0005794   GO:0008565   GO:0015031   GO:0030123   GO:0016876   GO:0043039  
PANTHER
PTHR12619  

Topology

Length:
1305
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0
Exp number, first 60 AAs:
0
Total prob of N-in:
0.00000
outside
1  -  1305
 
 

Population Genetic Test Statistics

Pi
233.638472
Theta
186.614215
Tajima's D
1.209634
CLR
0.320331
CSRT
0.711964401779911
Interpretation
Uncertain
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