Gene

KWMTBOMO08995  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA007781

Annotation

PREDICTED:_pseudouridine-metabolizing_bifunctional_protein_C1861.05_isoform_X3_[Bombyx_mori]

Location

Bomo_Chr15(-):9349027-9352101      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 1.35 Mitochondrial   Reliability : 1.185

CDS

ATGTTGGACGGCAGTACACATGCTTGCGTCATGGATCAATGCGGCGGTGGAGTCGGACGTAACATGGCAGAAGCACTATGGAGACTGCGGGGCGGACGTACGAAACTTCTGACCGCCATAGGCGACGATGCCGATGGAAAATACTTAGAAGAGATTGCACCAGGCCTGATACTGAACGGATGCGTCGTAAAGAACGGTCGGACGCCAACATATGCGGCAGTGATGGATTCCCGGGGAGAATGCCTTCTAGGTCTCGGCGACATGGCATTACACAATGACATCACCGTCGACAGGGTAAACAATAATATGACGCTATTAGAAAGGGCTCCACTTGTAGTTCTCGATGGCAACGTCCCACAAATTACTATGGACCATGTCTTAGAGCAATGTCAACGGCTTCGAAAACCTGGTAAGTTTCTAGAACGCTCTTGA

Protein

MLDGSTHACVMDQCGGGVGRNMAEALWRLRGGRTKLLTAIGDDADGKYLEEIAPGLILNGCVVKNGRTPTYAAVMDSRGECLLGLGDMALHNDITVDRVNNNMTLLERAPLVVLDGNVPQITMDHVLEQCQRLRKPGKFLERS

Uniprot

H9JE34   A0A2H1WGX3   A0A2A4J5P7   A0A194R8M2   A0A194PQE0   A0A3S2NUB5   + More
A0A212F6P9   A0A2P8YK20   A0A293LJT0   A0A293LIA6   B0WVP4   A0A1D2MGV0   Q17AQ9   A0A182NFW6   A0A182XXD0   B4KFG8   A0A0J9QU64   B4Q657   B4ICY9   Q9VPR3   Q8MYS6   B4LTN4   B3N7S1   A0A0M4E876   A0A0P5GTV1   A0A0P5LIS2   A0A0P5A5C8   A0A0P5LDJ7   A0A0P4ZBZ9   B4P2G1   A0A0P5JMQ7   A0A147BGQ2   A0A182I8S2   A0A1W4V2M9   A0A164XRJ0   B4JDR4   A0A167U815   A0A0P5WWE3   J9M3P9   A0A0P5W0Y9   A0A0N8ARS7   A0A0P5D2R0   A0A0P6GFA6   A0A0P6HQP4   A0A0G3XYQ0   A0A063YYC2   A0A023CLX3   L7ZQQ7   A0A1J1IFD5   A0A0P5A7V9   A0A0P6D064   S5YYB4   A0A0E0TAL8   A0A087LEC1   A0A161SHX7   A0A3L7CZ22   A0A2M9T249   A0A0D8BQU5   A0A1V9B3H9   A0A1B6D3E9   A0A1B6DRE2   A0A210PPV3   B3MLP7   A0A377FZG5   A0A182MJW6   A0A150M7Y9   A0A3B0JHG4   A0A142CZS0   V6VCM7   A0A2M4DS25   A0A0P5ZSC8   A0A2M4CRL9   Q29N57   B4G882   A0A1V9C1A7   A0A0Q0Y9E8   A0A150NF66   A0A3S0IXZ4   A0A3B0UKN6   A0A1I8PQD8   A0A1A9WN01   A0A139WH26   A0A3Q9QS05   A0A250DYF0   A0A2S2R297   A0A1L8E1E1   A0A1V4P819   A0A1Q5SR52   U2X8P4   H2J7F3   A0A069DYJ8   R9MSM4   A0A0N0Z1I2   A0A1A9XXR0   A0A1B0APG1   A0A1J4THC7   A0A1A9Z630   A0A226Q1I4   A0A0J0V357   A0A093IYC1  

Pubmed

19121390    26354079    22118469    29403074    27289101    17510324    + More
25244985    17994087    22936249    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    17550304    29652888    26913091    24788326    23618712    24459274    28812685    24903880    15632085    18362917    19820115    23045491    26334808    27112493   

EMBL

BABH01002532    ODYU01008491    SOQ52142.1    NWSH01003076    PCG66998.1    KQ460615    + More
KPJ13595.1    KQ459602    KPI93350.1    RSAL01000187    RVE44770.1    AGBW02009983    OWR49410.1    PYGN01000538    PSN44599.1    GFWV01002340    MAA27070.1    GFWV01003733    MAA28463.1    DS232130    EDS35651.1    LJIJ01001329    ODM92094.1    CH477331    EAT43327.1    CH933807    EDW13083.1    CM002910    KMY87339.1    CM000361    EDX03241.1    CH480829    EDW45415.1    AE014134    AAF51480.1    AY113628    AAM29633.1    CH940649    EDW65007.1    CH954177    EDV57247.1    CP012523    ALC38164.1    GDIQ01239840    JAK11885.1    GDIQ01173007    JAK78718.1    GDIP01203829    JAJ19573.1    GDIQ01173006    JAK78719.1    GDIP01215380    JAJ08022.1    CM000157    EDW87157.1    GDIQ01197853    JAK53872.1    GEGO01005466    JAR89938.1    APCN01003108    LRGB01000944    KZS14501.1    CH916368    EDW03434.1    CP015436    ANB64204.1    GDIP01080638    JAM23077.1    ABLF02022385    ABLF02022386    ABLF02022389    ABLF02022390    GDIP01093286    JAM10429.1    GDIQ01249243    JAK02482.1    GDIP01162075    JAJ61327.1    GDIQ01034017    JAN60720.1    GDIQ01016411    JAN78326.1    CP011832    AKM18676.1    JHUS01000030    KDE49317.1    AOTZ01000006    EZP76422.1    CP004008    AGE21833.1    CVRI01000048    CRK98928.1    GDIP01203828    JAJ19574.1    GDIP01007424    JAM96291.1    CP006254    AGT31684.1    CP002442    ADU93753.1    JPYV01000093    KFX34140.1    LQIE01000187    KZE90460.1    RCTJ01000007    RLQ14766.1    PIJF01000036    PJW16970.1    JYBP01000003    KJE26354.1    NADP01000011    OQP03936.1    GEDC01026456    GEDC01017076    JAS10842.1    JAS20222.1    GEDC01009042    JAS28256.1    NEDP02005564    OWF38530.1    CH902620    EDV30768.2    UGGS01000001    STO11891.1    AXCM01001575    LQYV01000152    KYD20465.1    OUUW01000004    SPP79732.1    CP014749    AMQ20272.1    AYSF01000055    ESU71806.1    GGFL01016179    MBW80357.1    GDIP01040299    JAM63416.1    GGFL01003737    MBW67915.1    CH379060    EAL33486.1    CH479180    EDW28562.1    NAGE01000043    OQP15376.1    LLKS01000069    KQC45951.1    LQYY01000002    KYD35367.1    RXNT01000004    RTR33840.1    UOER01000529    VAW25917.1    KQ971343    KYB27263.1    CP022572    AZU60882.1    CP016552    ATA59691.1    GGMS01014903    MBY84106.1    GFDF01001575    JAV12509.1    MVKA01000020    OPX02956.1    MQMG01000046    OKO90396.1    BASG01000057    GAD15192.1    CP003257    AEX86446.1    GBGD01002265    JAC86624.1    ASTD01000106    EOS73676.1    LJAJ01000058    KPC97718.1    JXJN01001399    MNUW01000075    OIO11218.1    CP018058    ASS99797.1    LDNZ01000185    KLR72735.1    KK571601    KFW07745.1   

Proteomes

UP000005204    UP000218220    UP000053240    UP000053268    UP000283053    UP000007151    + More
UP000245037    UP000002320    UP000094527    UP000008820    UP000075884    UP000076408    UP000009192    UP000000304    UP000001292    UP000000803    UP000008792    UP000008711    UP000092553    UP000002282    UP000075840    UP000192221    UP000076858    UP000001070    UP000076753    UP000007819    UP000035314    UP000027227    UP000023566    UP000011251    UP000183832    UP000015500    UP000002223    UP000029337    UP000076542    UP000266922    UP000231952    UP000032522    UP000192799    UP000242188    UP000007801    UP000255043    UP000075883    UP000075424    UP000268350    UP000071670    UP000018339    UP000001819    UP000008744    UP000192362    UP000051885    UP000075517    UP000271374    UP000095300    UP000091820    UP000007266    UP000282892    UP000217162    UP000191301    UP000186030    UP000016424    UP000007161    UP000014211    UP000037948    UP000092443    UP000092460    UP000183732    UP000092445    UP000214728    UP000036182   

PRIDE

H9JE34    Q9VPR3    Q8MYS6   

Pfam

PF00294   PfkB        + More
PF04227   Indigoidine_A
PF01826   TIL

Interpro

IPR011611   PfkB_dom        + More
IPR029056   Ribokinase-like       
IPR002173   Carboh/pur_kinase_PfkB_CS       
IPR022830   Indigdn_synthA-like       
IPR007342   PsuG       
IPR036084   Ser_inhib-like_sf       
IPR002919   TIL_dom       
IPR036390   WH_DNA-bd_sf       
IPR036388   WH-like_DNA-bd_sf       
IPR011991   ArsR-like_HTH       
IPR012318   HTH_CRP       
IPR002139   Ribo/fructo_kinase       
IPR000485   AsnC-type_HTH_dom       

SUPFAM

SSF53613   SSF53613        + More
SSF110581   SSF110581       
SSF57567   SSF57567       
SSF46785   SSF46785       

Gene 3D

3.40.1190.20     3.40.1790.10     1.10.10.10    

CDD

cd00090  HTH_ARSR

ProteinModelPortal

H9JE34   A0A2H1WGX3   A0A2A4J5P7   A0A194R8M2   A0A194PQE0   A0A3S2NUB5   + More
A0A212F6P9   A0A2P8YK20   A0A293LJT0   A0A293LIA6   B0WVP4   A0A1D2MGV0   Q17AQ9   A0A182NFW6   A0A182XXD0   B4KFG8   A0A0J9QU64   B4Q657   B4ICY9   Q9VPR3   Q8MYS6   B4LTN4   B3N7S1   A0A0M4E876   A0A0P5GTV1   A0A0P5LIS2   A0A0P5A5C8   A0A0P5LDJ7   A0A0P4ZBZ9   B4P2G1   A0A0P5JMQ7   A0A147BGQ2   A0A182I8S2   A0A1W4V2M9   A0A164XRJ0   B4JDR4   A0A167U815   A0A0P5WWE3   J9M3P9   A0A0P5W0Y9   A0A0N8ARS7   A0A0P5D2R0   A0A0P6GFA6   A0A0P6HQP4   A0A0G3XYQ0   A0A063YYC2   A0A023CLX3   L7ZQQ7   A0A1J1IFD5   A0A0P5A7V9   A0A0P6D064   S5YYB4   A0A0E0TAL8   A0A087LEC1   A0A161SHX7   A0A3L7CZ22   A0A2M9T249   A0A0D8BQU5   A0A1V9B3H9   A0A1B6D3E9   A0A1B6DRE2   A0A210PPV3   B3MLP7   A0A377FZG5   A0A182MJW6   A0A150M7Y9   A0A3B0JHG4   A0A142CZS0   V6VCM7   A0A2M4DS25   A0A0P5ZSC8   A0A2M4CRL9   Q29N57   B4G882   A0A1V9C1A7   A0A0Q0Y9E8   A0A150NF66   A0A3S0IXZ4   A0A3B0UKN6   A0A1I8PQD8   A0A1A9WN01   A0A139WH26   A0A3Q9QS05   A0A250DYF0   A0A2S2R297   A0A1L8E1E1   A0A1V4P819   A0A1Q5SR52   U2X8P4   H2J7F3   A0A069DYJ8   R9MSM4   A0A0N0Z1I2   A0A1A9XXR0   A0A1B0APG1   A0A1J4THC7   A0A1A9Z630   A0A226Q1I4   A0A0J0V357   A0A093IYC1  

PDB

3KZH     E-value=8.49268e-11,     Score=154

KEGG

101743270    K16330 pseudouridylate synthase / pseudouridine kinase [EC:4.2.1.70 2.7.1.83] | (RefSeq) pseudouridi

GO

GO:0016798   GO:0016301   GO:0016773   GO:0008152   GO:0016021   GO:0050225   GO:0043565   GO:0006355   GO:0003677  

PANTHER

PTHR42909  

Length:

143

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00325

Exp number, first 60 AAs:

0.00201

Total prob of N-in:

0.14029

outside

1  -  143

 

 

Pi

68.867422

Theta

75.51875

Tajima's D

0.256165

CLR

109.258111

CSRT

0.44142792860357

Interpretation

Uncertain