Gene

KWMTBOMO08986

Pre Gene Modal

BGIBMGA007786

Annotation

long-wavelength_opsin_[Ctenoplusia_agnata]

Location

Bomo_Chr15(-):9219839-9223021      View in EpiBrowser

Full name

Opsin-1       + More
Ceropsin      

Alternative Name

Rhodopsin 1, long-wavelength
Rhodopsin P520
Cerebral opsin

Location in the cell

PlasmaMembrane   Reliability : 4.883

CDS

ATGATTTCCTTGGATCCTGGACCAGGAATGGCAGCTCTCCAGGCGTGGGGTGGTCAAGTGGCTGCCTACGGAGCCGCTAACCAAACCGTTGTCGATAAAGTACCACCTGATATGCTACACATGGTCGATCCTCATTGGTACCAATTTCCACCTATGAACCCACTATGGCACGCCCTATTAGGCTTCACAATCGGAGTTCTTGGCTTCATATCAATTTCGGGTAACGGAATGGTCATTTACATTTTCATGTCAACAAAGAGCCTTAAAACACCATCAAACCTTCTCGTAGTGAATTTGGCATTCTCAGACTTCCTCATGATGTGTGCTATGTCTCCAGCGATGGTCGTTAACTGTTACAATGAAACTTGGGTTTTCGGACCTTTTGCATGCGAGCTATATGCTTGTGCCGGTTCATTATTTGGGTGTGCCTCGATTTGGACGATGACAATGATTGCTTTCGACCGCTATAATGTTATTGTGAAGGGCATTGCGGCAAAACCAATGACGAACAACGGCGCTCTTCTACGCATTCTTGGAATTTGGGCATTTTCGCTAGCTTGGACTCTTGCACCCTTCTTTGGCTGGAATAGATATGTGCCTGAAGGAAACATGACTGCATGCGGTACTGACTACCTGTCTAAAGATTGGTTTAGCCGCAGTTACATTCTTATTTACTCCGTTTTTGTTTACTTCGCCCCACTTCTTCTCATCATATATTCGTACTTCTTCATTGTGCAGGCCGTAGCTGCCCACGAAAAAGCAATGAGGGAACAAGCGAAAAAAATGAACGTCGCCTCTCTCAGATCATCTGAAGCAGCCAACACCAGCGCTGAATGCAAACTCGCCAAGGTGGCATTGATGACAATTTCCTTGTGGTTCATGGCTTGGACACCTTATTTGGTTATAAACTACACAGGGGTGTTTGAAAGCGCCCCGATCAGTCCTCTGGCCACCATTTGGGGATCGCTCTTTGCCAAAGCTAACGCTGTGTATAATCCGATTGTTTATGGCATCAGTCATCCCAAATACCAAGCAGCGTTGTATGCAAGGTTCCCTTCATTACAATGCCAATCAGCACCTCCGGACGATGGCGGCTCCGTGGCTTCGGGTGCCACAGCTGTCTCGGAGGAGAAGCCGGCCGCGTGA

Protein

MISLDPGPGMAALQAWGGQVAAYGAANQTVVDKVPPDMLHMVDPHWYQFPPMNPLWHALLGFTIGVLGFISISGNGMVIYIFMSTKSLKTPSNLLVVNLAFSDFLMMCAMSPAMVVNCYNETWVFGPFACELYACAGSLFGCASIWTMTMIAFDRYNVIVKGIAAKPMTNNGALLRILGIWAFSLAWTLAPFFGWNRYVPEGNMTACGTDYLSKDWFSRSYILIYSVFVYFAPLLLIIYSYFFIVQAVAAHEKAMREQAKKMNVASLRSSEAANTSAECKLAKVALMTISLWFMAWTPYLVINYTGVFESAPISPLATIWGSLFAKANAVYNPIVYGISHPKYQAALYARFPSLQCQSAPPDDGGSVASGATAVSEEKPAA

Description

Visual pigments are the light-absorbing molecules that mediate vision. They consist of an apoprotein, opsin, covalently linked to cis-retinal. May play a role in photoperiodic photoreception.

Similarity

Belongs to the G-protein coupled receptor 1 family. Opsin subfamily.
Belongs to the G-protein coupled receptor 1 family.

Keywords

Chromophore   Disulfide bond   G-protein coupled receptor   Glycoprotein   Membrane   Photoreceptor protein   Receptor   Retinal protein   Sensory transduction   Transducer   Transmembrane   Transmembrane helix   Vision   Complete proteome   Reference proteome  

Feature

chain  Opsin-1

Uniprot

H9JE39   V5L8P9   V5L9H5   V5L9G7   V5L913   V5L8Q3   + More
M9Q2H1   A0A2A4JXN8   V5L9D1   V5LAJ1   Q86M48   V5LAJ9   O02464   V5L909   A0A1I9W2P6   A0A0L7LD02   V5LAJ4   A0A0A7DWF7   V5L9D5   Q95YI3   V5L9H0   A0A0A7DWF4   A0A2H1V034   A0A068PTN4   A0A068PTN0   A0A068PTN8   A0A068PT86   E1CG99   A0A068PT89   A0A068PTQ7   H9JE40   O76124   A0A068PT93   Q9UAM7   A0A068PU89   A0A068PTR1   G9B4U3   M1VPI5   A0A194R7V0   A0A1Y0AXW6   A0A068PTQ3   E2DZN4   G9B4U4   A0A1Y0AXU0   Q8WS27   I6LEN1   A0A2S3SHS5   A0A1Y0AY39   Q1JQE9   A0A1Y0AY98   A0A1Y0AY75   E2DZP4   A0A1Y0AY70   A0A1Y0AYH2   Q5EU92   A0A1Y0AYG8   A0A1Y0AY61   A0A1Y0AXZ5   E2DZN5   A0A1Y0AY05   E2DZP0   A0A1Y0AYG2   M1V4D4   A0A194PSQ2   A0A1Y0AYH8   A0A1Y0AXX7   E2DZN2   E2DZN3   I6LEN2   R4GUQ2   A8DQY6   A0A1Y0AY71   G9B4U2   Q53AD0   A8DQZ7   E2DZN7   A0A1Y0AYC1   A0A1Y0AXX3   A0A1Y0AY64   E2DZN9   A0A1Y0AY97   A0A194PRB8   A0A1Y0AYB5   E2DZN6   E2DZP3   E2DZP2   A0A1Y0AYB9   Q76L21   E2DZN8   E2DZP1   A0A1Y0AY36   C4MF32   A0A1Y0AY96   C4MEB8   C1PHA6   A0A1Y0AY99   A8DQZ6   A0A194PRA1   O76123   C4XV73  

Pubmed

19121390    24205129    9343857    12939366    27777631    26227816    + More
11549248    21075944    9547302    26354079    9484709    10948267    28505307    20478921    11719576    17609538    29358930    16651559    15695761    17494749    15882645    15235009    19224222   

EMBL

BABH01002545    KF539440    AHA48184.1    KF539449    AHA48193.1    KF539439    + More
AHA48183.1    KF539446    AHA48190.1    KF539445    AHA48189.1    JX392054    AGH28027.1    NWSH01000412    PCG76569.1    KF539442    AHA48186.1    KF539438    AHA48182.1    AB073299    BAC66474.1    KF539448    AHA48192.1    L78080    AAD11964.1    KF539441    RSAL01000187    AHA48185.1    RVE44778.1    KX828983    APA21080.1    JTDY01001605    KOB73388.1    KF539443    AHA48187.1    KJ010188    AIY31989.1    KF539447    AHA48191.1    AB064496    AB184967    BAB63283.1    BAF73627.1    KF539444    AHA48188.1    KJ010187    AIY31988.1    ODYU01000073    SOQ34213.1    AB725199    BAP11256.1    AB725194    BAP11251.1    AB725204    BAP11261.1    AB725208    BAP11265.1    AB540941    BAJ22053.1    AB725213    BAP11270.1    AB725229    BAP11286.1    BABH01002546    BABH01002547    AB007424    KQ459602    BAA31722.1    KPI93339.1    AB725218    BAP11275.1    AF077190    AAD34221.1    AB725222    BAP11279.1    AB725234    BAP11291.1    HM366560    AEG80176.1    AB721382    BAM95292.1    KQ460615    KPJ13584.1    MF035501    ART29886.1    AB725224    BAP11281.1    GU324695    ADN96759.1    HM366561    AEG80177.1    MF035495    MF035498    ART29880.1    ART29883.1    AF385333    AAL59879.2    AY918895    AAY16528.1    PDGJ01000078    POC59217.1    MF035571    ART29956.1    AY918907    AAY16540.1    MF035616    MF035620    MF035623    MF035626    ART30000.1    ART30004.1    ART30007.1    ART30010.1    MF035574    MF035577    ART29959.1    ART29962.1    GU324705    MF035680    MF035683    ADN96769.1    ART30064.1    ART30067.1    MF035581    MF035585    ART29966.1    ART29970.1    MF035687    MF035691    MF035694    MF035701    MF035704    MF035708    ART30071.1    ART30075.1    ART30078.1    ART30085.1    ART30088.1    ART30092.1    AY740907    AAU93395.1    MF035712    ART30096.1    MF035604    ART29988.1    MF035533    ART29918.1    GU324696    MF035515    MF035518    MF035521    MF035525    ADN96760.1    ART29900.1    ART29903.1    ART29906.1    ART29910.1    MF035529    MF035536    MF035539    ART29914.1    ART29921.1    ART29924.1    GU324701    MF035630    ADN96765.1    ART30014.1    MF035698    ART30082.1    AB721386    BAM95296.1    KQ459595    KPI95998.1    MF035719    ART30103.1    MF035504    ART29889.1    GU324693    ADN96757.1    GU324694    ADN96758.1    AY918903    AAY16536.1    EU352196    ABY84496.1    DQ924367    ABI97866.1    MF035608    MF035612    ART29992.1    ART29996.1    HM366559    AEG80175.1    AY605545    AAU07978.1    DQ924378    ABI97877.1    GU324698    MF035543    MF035547    MF035551    MF035555    MF035559    MF035563    ADN96762.1    ART29928.1    ART29932.1    ART29936.1    ART29940.1    ART29944.1    ART29948.1    MF035657    ART30041.1    MF035507    MF035511    ART29892.1    ART29896.1    MF035592    MF035596    MF035600    ART29977.1    ART29981.1    ART29985.1    GU324700    MF035589    ADN96764.1    ART29974.1    MF035640    MF035643    ART30024.1    ART30027.1    KPI95996.1    MF035649    ART30033.1    GU324697    ADN96761.1    GU324704    ADN96768.1    GU324703    MF035665    MF035668    MF035672    MF035676    ADN96767.1    ART30049.1    ART30052.1    ART30056.1    ART30060.1    MF035653    MF035661    ART30037.1    ART30045.1    AB086066    AB188567    AB177984    BAD06459.1    BAD36899.1    BAD66860.1    GU324699    ADN96763.1    GU324702    ADN96766.1    MF035567    ART29952.1    EU480690    ACC77726.1    MF035633    ART30017.1    EU352197    ABY84497.1    AB467311    BAH57295.1    MF035637    ART30021.1    DQ924377    ABI97876.1    KPI95837.1    AB007423    BAA31721.1    AY918900    AAY16533.1   

Proteomes

UP000005204    UP000218220    UP000283053    UP000037510    UP000053268    UP000053240    + More
UP000237283   

PRIDE

H9JE39    O02464    Q95YI3    H9JE40   

Pfam

PF00001   7tm_1

Interpro

IPR001760   Opsin        + More
IPR017452   GPCR_Rhodpsn_7TM       
IPR027430   Retinal_BS       
IPR000276   GPCR_Rhodpsn       
IPR001391   Opsin_lateye       

ProteinModelPortal

H9JE39   V5L8P9   V5L9H5   V5L9G7   V5L913   V5L8Q3   + More
M9Q2H1   A0A2A4JXN8   V5L9D1   V5LAJ1   Q86M48   V5LAJ9   O02464   V5L909   A0A1I9W2P6   A0A0L7LD02   V5LAJ4   A0A0A7DWF7   V5L9D5   Q95YI3   V5L9H0   A0A0A7DWF4   A0A2H1V034   A0A068PTN4   A0A068PTN0   A0A068PTN8   A0A068PT86   E1CG99   A0A068PT89   A0A068PTQ7   H9JE40   O76124   A0A068PT93   Q9UAM7   A0A068PU89   A0A068PTR1   G9B4U3   M1VPI5   A0A194R7V0   A0A1Y0AXW6   A0A068PTQ3   E2DZN4   G9B4U4   A0A1Y0AXU0   Q8WS27   I6LEN1   A0A2S3SHS5   A0A1Y0AY39   Q1JQE9   A0A1Y0AY98   A0A1Y0AY75   E2DZP4   A0A1Y0AY70   A0A1Y0AYH2   Q5EU92   A0A1Y0AYG8   A0A1Y0AY61   A0A1Y0AXZ5   E2DZN5   A0A1Y0AY05   E2DZP0   A0A1Y0AYG2   M1V4D4   A0A194PSQ2   A0A1Y0AYH8   A0A1Y0AXX7   E2DZN2   E2DZN3   I6LEN2   R4GUQ2   A8DQY6   A0A1Y0AY71   G9B4U2   Q53AD0   A8DQZ7   E2DZN7   A0A1Y0AYC1   A0A1Y0AXX3   A0A1Y0AY64   E2DZN9   A0A1Y0AY97   A0A194PRB8   A0A1Y0AYB5   E2DZN6   E2DZP3   E2DZP2   A0A1Y0AYB9   Q76L21   E2DZN8   E2DZP1   A0A1Y0AY36   C4MF32   A0A1Y0AY96   C4MEB8   C1PHA6   A0A1Y0AY99   A8DQZ6   A0A194PRA1   O76123   C4XV73  

PDB

2ZIY     E-value=1.57177e-57,     Score=564

KEGG

692413    K04255 r-opsin | (RefSeq) opsin 1

GO

GO:0016021   GO:0009881   GO:0007601   GO:0007602   GO:0018298   GO:0004930   GO:0007186   GO:0008237   GO:0008270   GO:0043565   GO:0016876   GO:0043039  

Subcellular location

Membrane  

Length:

381

Number of predicted TMHs:

7

Exp number of AAs in TMHs:

153.92237

Exp number, first 60 AAs:

2.46568

Total prob of N-in:

0.01929

outside

1  -  59

TMhelix

60  -  82

inside

83  -  93

TMhelix

94  -  116

outside

117  -  130

TMhelix

131  -  153

inside

154  -  172

TMhelix

173  -  195

outside

196  -  220

TMhelix

221  -  243

inside

244  -  283

TMhelix

284  -  306

outside

307  -  315

TMhelix

316  -  338

inside

339  -  381

 

 

Pi

161.504749

Theta

210.334518

Tajima's D

-1.068765

CLR

1122.146672

CSRT

0.130243487825609

Interpretation

Uncertain