Gene

KWMTBOMO08983  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA007743

Annotation

PREDICTED:_60S_ribosomal_protein_L8_[Plutella_xylostella]

Location

Bomo_Chr15(+):9198022-9200991      View in EpiBrowser

Full name

60S ribosomal protein L8      

Location in the cell

Cytoplasmic   Reliability : 3.629

CDS

ATGGGTCGTGTAATACGTGCTCAGCGTAAGGGTGCCGGTTCAGTTTTCGTTTCTCACACGAAGAAGAGGAAAGGCGCTCCTAAACTTCGCTCTTTAGATTACGCTGAACGTCATGGATACATCAAGGGAGTTGTTAAGGATATAATCCATGACCCTGGTAGAGGTGCACCTTTGGCTGTTGTACACTTCCGCGATCCATACAAGTTCAAGACAAGGAAGGAGCTCTTCATTGCTCCCGAAGGGCTCTACACAGGCCAATTTGTTTATTGTGGAAAGAAAGCAACTCTTGAAGTTGGAAATGTGATGCCTGTTGGAGCTATGCCTGAGGGTACCATTGTGTGCAATCTTGAAGAGAAAATGGGTGATAGAGGTCGTCTGGCACGTGCCTCTGGAAACTTCGCCACTGTGATTGGACACAATCCTGATGCTAAGCGTACAAGAGTAAAGCTACCGTCTGGAGCCAAGAAGGTTCTGCCATCAAGCAACAGAGGCATGGTCGGTATTGTTGCTGGAGGTGGACGTATTGACAAACCTATTTTGAAAGCTGGAAGGGCATACCACAAGTACAAGGTCAAACGTAACTGCTGGCCATATGTACGTGGTGTTGCCATGAACCCTGTAGAGCATCCTCACGGTGGTGGTAACCATCAACATATAGGTAAGGCTTCCACTGTCAAGAGAGGAACATCTGCTGGTCGCAAAGTTGGTCTTATTGCTGCTCGCAGGACCGGAAGGATTCGTGGAGGCAAGACCGATACAAAGAAGGAGACCTAA

Protein

MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAVVHFRDPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVGIVAGGGRIDKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTSAGRKVGLIAARRTGRIRGGKTDTKKET

Similarity

Belongs to the universal ribosomal protein uL2 family.

Keywords

Cytoplasm   Ribonucleoprotein   Ribosomal protein   RNA-binding   rRNA-binding  

Feature

chain  60S ribosomal protein L8

Uniprot

A0A0K8T749   A0A2H1WU52   B2CPY0   A0A3G1PY67   Q5UAT2   Q95V39   + More
Q6RYS3   G3LHL1   D1LYM4   S4P8I2   A0A212FAM8   G0ZEG4   A0A2A4JX58   A0A0L7LD42   A0A3G1T1E3   A0A343EU19   E7DZ46   I4DLX2   I4DIE9   A0A3S2P8Y5   A0A194R7F7   A0A3B0EJ79   Q6F483   A0A0C9RMZ6   E2B849   A0A088ABL2   V9IFP4   A0A310SE17   Q56FH5   A0A0L7QZ68   E2A9Y1   A0A154P058   A0A0J7LA67   A0A1W4WWU7   K9L9D8   A0A232F6M4   K7IWL3   A0A195E397   A0A195C8W9   A0A195BUU6   A0A195FS44   A0A158NVM1   A0A151X5C8   E9IP06   A0A2J7RT19   A0A026W4J7   A0A0T6B0S4   A0A067QNP5   J3JX74   Q4GXL3   A0A0M8ZWP8   V5GQR7   A0A0P4VPC9   R4G4Q1   A0A224XW34   A0A069DY45   R4FNC7   R4V1H1   A6YPH7   D6WM76   A0A1B6KMH3   A7KCY3   A0A161MTD9   A0A1Y1LAM6   A0A1S3DB40   A0A0K8SUZ2   A0A1B6CTT7   Q4GXL1   D1M824   G8CV17   Q4GXL5   Q4GXL4   A0A0K8TQA9   C4WSN2   E0VFV3   A0A0X8NXY5   Q4GXL2   A2I3X6   Q5MGL2   U5EXC2   J7HXY6   Q1HR32   A0A182G6L7   A0A2A3E6Y0   A0A1Q3F946   B0VZP3   T1DMX0   A0A2M3ZF05   A0A2M3ZYF3   B6DDR9   A0A182FD79   A0A411NQA6   Q29FA8   B4N386   U4U2T4   B4LDV0   A0A1B0DJ65   A0A226D6Q7   A0A182JD28   B4KYM8  

Pubmed

19121390    14668217    21840855    23622113    22118469    26227816    + More
22651552    26354079    20798317    28648823    20075255    21347285    21282665    24508170    30249741    24845553    22516182    23537049    27129103    26334808    18207082    18362917    19820115    17603110    28004739    26823975    22028913    29136191    26369729    20566863    16023793    22874750    17204158    17510324    26483478    19178717    20920257    23761445    15632085    17994087    23185243   

EMBL

GBRD01004590    JAG61231.1    ODYU01011032    SOQ56512.1    EU541491    ACB36910.1    + More
KY701524    AVV62492.1    BABH01002548    AY769276    AAV34818.1    AF429973    AY485337    JN383814    AEN04490.1    GU084298    ACY95331.1    GAIX01005916    JAA86644.1    AGBW02009451    OWR50780.1    JF265042    AEL28873.1    NWSH01000412    PCG76581.1    JTDY01001605    KOB73392.1    MG992366    AXY94804.1    MF067292    ASM61890.1    HQ424749    ADT80693.1    AK402290    BAM18912.1    AK401067    KQ459602    BAM17689.1    KPI93336.1    RSAL01000187    RVE44782.1    KQ460615    KPJ13582.1    RBVL01000311    RKO09452.1    AB180407    BAD26651.1    GBYB01014802    JAG84569.1    GL450776    GL446282    EFN80472.1    EFN88141.1    JR040803    JR040804    AEY59305.1    AEY59306.1    KQ762360    OAD55925.1    AY961525    AAX62427.1    KQ414681    KOC63924.1    GL437987    EFN69749.1    KQ434786    KZC05223.1    LBMM01000135    KMR04807.1    JN833715    AFG29037.1    NNAY01000880    OXU26088.1    KQ979701    KYN19635.1    KQ978072    KYM97309.1    KQ976409    KYM90983.1    KQ981281    KYN43278.1    ADTU01027278    KQ982515    KYQ55577.1    GL764397    EFZ17738.1    NEVH01000249    PNF43977.1    KK107429    QOIP01000014    EZA50948.1    RLU14713.1    LJIG01016384    KRT80763.1    KK853131    KDR10917.1    APGK01037925    BT127842    KB740949    AEE62804.1    ENN77183.1    AM049010    CAJ17248.1    KQ435815    KOX72660.1    GALX01001987    JAB66479.1    GDKW01001728    JAI54867.1    GAHY01001160    JAA76350.1    GFTR01004217    JAW12209.1    GBGD01002595    JAC86294.1    ACPB03015005    GAHY01000618    JAA76892.1    KC740673    AGM32497.1    EF638988    ABR27873.1    KQ971343    EFA03346.1    GEBQ01027318    JAT12659.1    EF207977    ABS57451.1    GEMB01000175    JAS02939.1    GEZM01063738    JAV68985.1    GBRD01009111    GDHC01017821    JAG56710.1    JAQ00808.1    GEDC01020655    JAS16643.1    AM049012    CAJ17272.1    GU120448    ACY71298.1    HQ385976    QKKF02009658    ADQ73877.1    RZF45223.1    AM049008    CAJ17246.1    AM049009    CAJ17247.1    GDAI01001270    JAI16333.1    ABLF02014985    AK340259    AK340260    BAH70902.1    DS235124    EEB12259.1    KC507331    AHB12454.1    AM049011    CAJ17249.1    EF070479    ABM55545.1    AY829774    AAV91388.1    GANO01001015    JAB58856.1    JX122920    AFQ22729.1    DQ440262    CH477205    ABF18295.1    EAT47906.1    JXUM01045133    KQ561427    KXJ78620.1    KZ288347    PBC27523.1    GFDL01010944    JAV24101.1    DS231815    EDS35135.1    GAMD01003375    JAA98215.1    GGFM01006375    MBW27126.1    GGFK01000200    MBW33521.1    EU934279    ADMH02002122    ACI30057.1    ETN58771.1    MK210586    QBF54181.1    CH379067    EAL31347.1    KRT07409.1    CH964062    EDW78825.1    KB631641    ERL84896.1    CH940647    EDW68973.1    AJVK01034696    AJVK01034697    LNIX01000033    OXA40417.1    CH933809    EDW17742.1   

Proteomes

UP000005204    UP000007151    UP000218220    UP000037510    UP000053268    UP000283053    + More
UP000053240    UP000276569    UP000008237    UP000005203    UP000053825    UP000000311    UP000076502    UP000036403    UP000192223    UP000215335    UP000002358    UP000078492    UP000078542    UP000078540    UP000078541    UP000005205    UP000075809    UP000235965    UP000053097    UP000279307    UP000027135    UP000019118    UP000053105    UP000015103    UP000007266    UP000079169    UP000291343    UP000007819    UP000009046    UP000008820    UP000069940    UP000249989    UP000242457    UP000002320    UP000000673    UP000069272    UP000001819    UP000007798    UP000030742    UP000008792    UP000092462    UP000198287    UP000075880    UP000009192   

PRIDE

Q5UAT2    Q95V39    Q6RYS3    A0A088ABL2   

Pfam

PF00181   Ribosomal_L2        + More
PF03947   Ribosomal_L2_C
PF00271   Helicase_C
PF00270   DEAD

Interpro

IPR014722   Rib_L2_dom2        + More
IPR022669   Ribosomal_L2_C       
IPR012340   NA-bd_OB-fold       
IPR022666   Rbsml_prot_L2_RNA-bd_dom       
IPR008991   Translation_prot_SH3-like_sf       
IPR014726   Ribosomal_L2_dom3       
IPR002171   Ribosomal_L2       
IPR022671   Ribosomal_L2_CS       
IPR023672   Ribosomal_L2_arc       
IPR014001   Helicase_ATP-bd       
IPR000629   RNA-helicase_DEAD-box_CS       
IPR001650   Helicase_C       
IPR011545   DEAD/DEAH_box_helicase_dom       
IPR014014   RNA_helicase_DEAD_Q_motif       
IPR027417   P-loop_NTPase       

SUPFAM

SSF50249   SSF50249        + More
SSF50104   SSF50104       
SSF52540   SSF52540       

Gene 3D

2.30.30.30     4.10.950.10    

CDD

cd00079  HELICc

ProteinModelPortal

A0A0K8T749   A0A2H1WU52   B2CPY0   A0A3G1PY67   Q5UAT2   Q95V39   + More
Q6RYS3   G3LHL1   D1LYM4   S4P8I2   A0A212FAM8   G0ZEG4   A0A2A4JX58   A0A0L7LD42   A0A3G1T1E3   A0A343EU19   E7DZ46   I4DLX2   I4DIE9   A0A3S2P8Y5   A0A194R7F7   A0A3B0EJ79   Q6F483   A0A0C9RMZ6   E2B849   A0A088ABL2   V9IFP4   A0A310SE17   Q56FH5   A0A0L7QZ68   E2A9Y1   A0A154P058   A0A0J7LA67   A0A1W4WWU7   K9L9D8   A0A232F6M4   K7IWL3   A0A195E397   A0A195C8W9   A0A195BUU6   A0A195FS44   A0A158NVM1   A0A151X5C8   E9IP06   A0A2J7RT19   A0A026W4J7   A0A0T6B0S4   A0A067QNP5   J3JX74   Q4GXL3   A0A0M8ZWP8   V5GQR7   A0A0P4VPC9   R4G4Q1   A0A224XW34   A0A069DY45   R4FNC7   R4V1H1   A6YPH7   D6WM76   A0A1B6KMH3   A7KCY3   A0A161MTD9   A0A1Y1LAM6   A0A1S3DB40   A0A0K8SUZ2   A0A1B6CTT7   Q4GXL1   D1M824   G8CV17   Q4GXL5   Q4GXL4   A0A0K8TQA9   C4WSN2   E0VFV3   A0A0X8NXY5   Q4GXL2   A2I3X6   Q5MGL2   U5EXC2   J7HXY6   Q1HR32   A0A182G6L7   A0A2A3E6Y0   A0A1Q3F946   B0VZP3   T1DMX0   A0A2M3ZF05   A0A2M3ZYF3   B6DDR9   A0A182FD79   A0A411NQA6   Q29FA8   B4N386   U4U2T4   B4LDV0   A0A1B0DJ65   A0A226D6Q7   A0A182JD28   B4KYM8  

PDB

4V6W     E-value=7.8977e-108,     Score=996

KEGG

692663    K02938 large subunit ribosomal protein L8e | (RefSeq) RpL8; ribosomal protein L8

PATHWAY

03010    Ribosome - Bombyx mori (domestic silkworm)

GO

GO:0006412   GO:0003735   GO:0005840   GO:0019843   GO:0015934   GO:0003723   GO:0002181   GO:0022625   GO:0005524   GO:0004386   GO:0000228   GO:0005730   GO:0005622   GO:0016887   GO:0008237   GO:0008270   GO:0043565   GO:0016876   GO:0043039  

PANTHER

PTHR13691  

Subcellular location

Cytoplasm  

Length:

257

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.01074

Exp number, first 60 AAs:

0

Total prob of N-in:

0.29464

outside

1  -  257

 

 

Pi

190.582997

Theta

210.259043

Tajima's D

-0.672058

CLR

10.357672

CSRT

0.1998400079996

Interpretation

Uncertain