Gene

KWMTBOMO08981

Pre Gene Modal

BGIBMGA007789

Annotation

cryptochrome_2_[Bombyx_mori]

Location

Bomo_Chr15(-):9169721-9188562      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 2.21

CDS

ATGTCAGCAGCCCCAGAAACACTGCCACCACCAAGTGCTCAAGCTCACACGCCGGCCAGGCCTACTCATATGTCCGCACCTCGACGTACGCCGGGTAAACACACCGTGCATTGGTTCCGGAAAGGATTGCGAATCCACGATAACCCCGCCCTTCGAGAGGGCATTATAGACGCTGTCACATTCCGATGCGTCTTTATAATAGATCCATGGTTCGCCAGCTCTTCAAACGTTGGCATAAACAAATGGAGATTCCTATTGCAATGTTTAGAGGATTTAGATAAAAGTTTAAAGAAGCTTAATTCGAGGCTATTCGTTGTTCGCGGTCAGCCCGCGGATGCGTTGCCAAAATTGTTTCGAGAATGGGGTACAACAGCATTAACCTTTGAAGAGGACCCTGAGCCTTACGGCCGCGTACGCGATCACAATATTATATCTAAATGTCGTGAAGTTGGCATAACAGTGACCTCTCGCGTCTCACACACTTTATACAAATTGGACAAAATAATAGAACGCAATGGTGGTAAAGCTCCGTTAACATATCATCAGTTCCAAGCGTTAATCGCCAGTATGCCGCCCCCTCCACCGGCCGAAGTTACAATAACTCCGCAAATGCTCAATGGAGCCACTACACCGATTACTGATAATCACGATGATCGTTTTGGAGTCCCCACATTAGAAGAGCTTGGATTCGAAACCGAGGGACTAAAGCCACCAATATGGATAGGCGGAGAAAGTGAAGCTTTAGCCAGGTTAGAGAGGCATTTAGAGAGAAAAGCCTGGGTGGCTTCATTTGGAAGACCCAAAATGACACCGCAATCATTGCTGGCGAGCCAAACGGGACTATCACCATACTTAAGATTCGGATGTCTGTCGACCCGATTGTTTTACTATCAATTGACGGAATTGTATAAAAGAGTGAAACGGGTGCGGCCTCCGCTCTCTCTTCACGGACAAATATTATGGAGGGAGTTCTTTTACTGTGCTGCGACAAGAAACCCAAATTTCGATCGCATGGAAGGAAATCCTATATGCGTTCAAATACCTTGGGAGAAGAATCAGGACGCTCTAGCGAAATGGGCAAATGGGCAAACCGGATACCCTTGGATTGATGCCATAATGATTCAATTACGAGAAGAGGGCTGGATTCACCATTTATCGCGACACGCTGTAGCCTGCTTTTTGACAAGAGGAGATCTTTGGATTTCATGGGAAGAAGGAATGAAGGTGTTCGATGAGTTACTCCTCGATGCAGACTGGTCGGTGAACGCAGGCATGTGGATGTGGTTCTCCTGCTCGTCGTTTTTCCAACAATTTTTCCACTGTTACTGCCCTGTGCGTTTTGGAAGGAAAACCGACCCTAATGGTGATTTCATAAGGAAATACATACCGGCTCTGAAGAACATGCCAACGCGCTACATACACGAGCCGTGGATGGCCCCGGAGTCTGTGCAGGCGGCCGCCCAGTGCAGCATCGGACGTGACTACCCCATGCCGATGGTCGACCACACCAAGGCCTCGCAGATAAATATCGAACGGATCAAACAGGTCTACGCACAACTCGCCCGATATAAGCCTCAAGCTACGCTAAATGCTAATGCAGTCCAGCGACCCAACGTGTTGCAGTCGTCGCCAAGTCCGACATCAATAATCGCCAGCATCAACCAGTCCAACTTCTTGTGCAGCCAAACTCCGGATCCACAAAACGCTACATCGCATTCGTTCAAAGAGCCGTCAGACACATTCCCAATAAACAAAAAAAACAAAGATACCGAATCGAACCAAACTCGCTACAAACGAGTAATTATCGTGCAAAAAACACGCAATTCTAATGTGGAAATTAATGTATCCGCTCCACAAGATCGGAGAGCTTCAGATAATTATATCACGATTAATGAGGGAGATCCTGCACACAGTACAGACGCAAAAAAACAAGAAAATAATTACGATTTCAAAAATTTGGCTATCGACAATCATATCCGAGGGTTTAATAACATTCAAAATATAAATTCTCAATATTATTTAACTAATTATTCTACTAAGAAGAAAGAAACTGAAATAAAAAATGAAACAGACGAAGGTCCATTTGTGCGCCCGGAAAGTTATGGCACAGACAGGGCTTACACAATCAACCGTTGCCCTTCCATGTCAAATGAAAAAGAATTTGAAACGCCCAAAGAAAATCTAAAACAATAA

Protein

MSAAPETLPPPSAQAHTPARPTHMSAPRRTPGKHTVHWFRKGLRIHDNPALREGIIDAVTFRCVFIIDPWFASSSNVGINKWRFLLQCLEDLDKSLKKLNSRLFVVRGQPADALPKLFREWGTTALTFEEDPEPYGRVRDHNIISKCREVGITVTSRVSHTLYKLDKIIERNGGKAPLTYHQFQALIASMPPPPPAEVTITPQMLNGATTPITDNHDDRFGVPTLEELGFETEGLKPPIWIGGESEALARLERHLERKAWVASFGRPKMTPQSLLASQTGLSPYLRFGCLSTRLFYYQLTELYKRVKRVRPPLSLHGQILWREFFYCAATRNPNFDRMEGNPICVQIPWEKNQDALAKWANGQTGYPWIDAIMIQLREEGWIHHLSRHAVACFLTRGDLWISWEEGMKVFDELLLDADWSVNAGMWMWFSCSSFFQQFFHCYCPVRFGRKTDPNGDFIRKYIPALKNMPTRYIHEPWMAPESVQAAAQCSIGRDYPMPMVDHTKASQINIERIKQVYAQLARYKPQATLNANAVQRPNVLQSSPSPTSIIASINQSNFLCSQTPDPQNATSHSFKEPSDTFPINKKNKDTESNQTRYKRVIIVQKTRNSNVEINVSAPQDRRASDNYITINEGDPAHSTDAKKQENNYDFKNLAIDNHIRGFNNIQNINSQYYLTNYSTKKKETEIKNETDEGPFVRPESYGTDRAYTINRCPSMSNEKEFETPKENLKQ

Uniprot

E1AFY1   H9JE42   M4IS20   M4IRA8   A0A2A4JYT7   A4GKG3   + More
M4ISF0   A0A2H1X1L1   J9T0Q8   A0A2H4ZRT4   E2D7U7   I1ZEF8   B7S6U7   A0A194RCE9   W8RD57   A0A3S2N934   Q0QWP3   A0A212FAM3   A0A194PQC5   A0A2M4A051   A0A2M4A0A0   A0A2M4A0F5   A0A2J7R119   A8QSC1   W5J3L0   A0A0L7RIG9   A0A336LPS9   A0A348AY32   A0A1L5YQJ4   A0A1B6D995   M4IS19   M4IRA5  

Pubmed

19121390    17244599    23448062    26354079    16332522    22118469    + More
20920257    23761445   

EMBL

HM747058    HM747060    ADM86933.1    BABH01002552    JQ713142    AGA11668.1    + More
JQ713141    AGA11667.1    NWSH01000412    PCG76580.1    EF117812    ABO38435.1    JQ713140    AGA11666.1    ODYU01012739    SOQ59201.1    JX077109    AFR54427.1    KY491539    AUG44606.1    GQ896503    ADN94465.2    JQ616847    AFJ22639.1    EF396286    ABQ84983.1    KQ460615    KPJ13581.1    KF977409    AHL69753.1    RSAL01000187    RVE44783.1    DQ184682    ABA62409.1    AGBW02009451    OWR50781.1    KQ459602    KPI93335.1    GGFK01000791    MBW34112.1    GGFK01000854    MBW34175.1    GGFK01000797    MBW34118.1    NEVH01008214    PNF34525.1    EF110521    ABO31112.1    ADMH02002109    ETN58942.1    KQ414583    KOC70762.1    UFQS01000097    UFQT01000097    SSW99415.1    SSX19795.1    LC320666    BBD05666.1    KX602318    APP94027.1    GEDC01018842    GEDC01015027    GEDC01008790    JAS18456.1    JAS22271.1    JAS28508.1    JQ713137    AGA11663.1    JQ713136    AGA11662.1   

Proteomes

UP000005204    UP000218220    UP000053240    UP000283053    UP000007151    UP000053268    + More
UP000235965    UP000000673    UP000053825   

PRIDE

E1AFY1    H9JE42   

Pfam

PF03441   FAD_binding_7        + More
PF00875   DNA_photolyase

Interpro

IPR036155   Crypto/Photolyase_N_sf        + More
IPR036134   Crypto/Photolyase_FAD-like_sf       
IPR014729   Rossmann-like_a/b/a_fold       
IPR005101   Cryptochr/Photolyase_FAD-bd       
IPR006050   DNA_photolyase_N       

SUPFAM

SSF52425   SSF52425        + More
SSF48173   SSF48173       

Gene 3D

3.40.50.620    

ProteinModelPortal

E1AFY1   H9JE42   M4IS20   M4IRA8   A0A2A4JYT7   A4GKG3   + More
M4ISF0   A0A2H1X1L1   J9T0Q8   A0A2H4ZRT4   E2D7U7   I1ZEF8   B7S6U7   A0A194RCE9   W8RD57   A0A3S2N934   Q0QWP3   A0A212FAM3   A0A194PQC5   A0A2M4A051   A0A2M4A0A0   A0A2M4A0F5   A0A2J7R119   A8QSC1   W5J3L0   A0A0L7RIG9   A0A336LPS9   A0A348AY32   A0A1L5YQJ4   A0A1B6D995   M4IS19   M4IRA5  

PDB

4K0R     E-value=0,     Score=1846

KEGG

100500922    K02295 cryptochrome | (RefSeq) cry2; cryptochrome 2

GO

GO:0016829  

Length:

730

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00982

Exp number, first 60 AAs:

0.00084

Total prob of N-in:

0.00017

outside

1  -  730

 

 

Pi

222.133066

Theta

192.905104

Tajima's D

0.448241

CLR

0.44693

CSRT

0.496025198740063

Interpretation

Possibly Positive selection