Silkworm Genome Informatics Database

Gene

KWMTBOMO08980

Annotation

PREDICTED:_U7_snRNA-associated_Sm-like_protein_LSm10_[Amyelois_transitella]

Location

Bomo_Chr15(+):9161003-9163946 View in EpiBrowser

Location in the cell

Nuclear Reliability : 2.322

CDS

ATGAACATTTCATTTAAAAATGCGATTTATTGTGATCCACAAGGAAATGAATTCGCTTTTGACAACCTGTTTATTCATGGTCGTAATATCAGATATGTGCATATTCCAGAAAATATGTCGCTCCTATCAACAATTCGACATGAAGTTTCCAAAAAATTCTACAAGCCCCATATGAAACAGCTCACAGAAAAAACAAGAAAAACTAAAAAAGCAGTAATGCAACATATGAAAGTAGTAGCATCATTAAACACATAA

Protein

MNISFKNAIYCDPQGNEFAFDNLFIHGRNIRYVHIPENMSLLSTIRHEVSKKFYKPHMKQLTEKTRKTKKAVMQHMKVVASLNT

Uniprot

A0A0L7LC48 A0A2H1X1H9 A0A194R8K5 A0A2A4JY30 S4PY23 A0A437B382 + More
I4DQG0 A0A212FAL9 A0A067R1H3 A0A1B6F7T5 A0A1B6IFG4 W5UCI5 A0A2R7WC13

Pubmed

26227816 26354079 23622113 22651552 22118469 24845553 + More
23127152

EMBL

JTDY01001720 KOB73082.1 ODYU01012739 SOQ59200.1 KQ460615 KPJ13580.1 + More
NWSH01000412 PCG76578.1 GAIX01004038 JAA88522.1 RSAL01000187 RVE44784.1 AK404095 BAM20150.1 AGBW02009451 OWR50782.1 KK852994 KDR12728.1 GECZ01023487 JAS46282.1 GECU01022066 JAS85640.1 JT411788 AHH39605.1 KK854520 PTY16540.1

Proteomes

UP000037510 UP000053240 UP000218220 UP000283053 UP000007151 UP000027135 + More
UP000221080

Pfam

PF01423   LSM        + More
PF08695   Coa1
PF05761   5_nucleotid

Interpro

IPR010920   LSM_dom_sf        + More
IPR001163   LSM_dom_euk/arc
IPR014807   Cyt_oxidase_assembly-1
IPR008380   HAD-SF_hydro_IG_5-nucl
IPR023214   HAD_sf
IPR036412   HAD-like_sf

SUPFAM

SSF50182 SSF50182 + More
SSF56784 SSF56784

Gene 3D

3.40.50.1000

ProteinModelPortal

A0A0L7LC48 A0A2H1X1H9 A0A194R8K5 A0A2A4JY30 S4PY23 A0A437B382 + More
I4DQG0 A0A212FAL9 A0A067R1H3 A0A1B6F7T5 A0A1B6IFG4 W5UCI5 A0A2R7WC13

KEGG

101745242 no KO assigned | (RefSeq) U7 snRNA-associated Sm-like protein LSm10

GO

PANTHER

PTHR12103

Length:

84

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00132

Exp number, first 60 AAs:

0.00132

Total prob of N-in:

0.41038

outside

1 - 84

Pi

218.252423

Theta

179.802456

Tajima's D

0.678607

CLR

1.482541

CSRT

0.564021798910055

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics