SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO08978  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA007740
Annotation
PREDICTED:_golgin_subfamily_A_member_4-like_[Bombyx_mori]
Location in the cell
Nuclear   Reliability : 3.446
 

Sequence

CDS
ATGTTTAAGAAATTGAAAGATAAACTTGCTGAGGAAGTGAAATCCTCACCACAGAGAATTCAGCAATTCGCCCAAGCCGCCCAGGCTGCTGTAACATCAGCATCAAGTAGTATTTCAGATATCACAAATAGTGACCTATTTTCTATAGGAGAAAATGATAGTCAAACATTTCATTCAACTAAATCACAGCCATCAACTGTCTCTCAAAGTAATACTTTTCGAGATGTCTCGCCCATGCAAACAACAACAACTGAATCAACTGAATACAATTCTGGACAAGACTTAAGTCAAGATAATGAGCGTCAAAGGAGACTGTCTAACAGTTCTTTTGCGAGTGATGTATCCTTCAGACTACCCAGCTACGACACACCAATGATGTACCACTTACAATCCGATATTGAAGTATCTGCAAGTGAAGCTGAAGAAAGAGGCTTAAATGGTAGCACAGTGAGCCTCGATCGTGTCACTAAAGAACAACTGTATGCTGCCTATAAACGAACACAGGAAAGATACAAGAAATATAGGACACAATATGGAGACTTAGCCAGACACTACAAGCTCTTAGAGAGAGAAAATACTAAAGCAAGGAGTGTCTTAGTTGAAACTCAAGATAAAGCCTTACGGAGAATATCGGAATTGAGAGAACAATGCTCACTAGAACAAAGTGCAAAAGCACATTTAGAAAAAGCTCTTCGTGTGGAAATTGAAGAAAAAAATATGAAAATTGAGACTTTGAACACGAAAATACAATTCCTCTCCAATAGTACAAGTGCAGAAATTCCTACCAATATAGTGGATAACAATAAGATTATCATCGACAAAGATAGCAATATACCTTTAATTAATTTAGTAGAAAACGAAACAAAGGTGTCCAATGATGAATCGAAATTGCCAGTGTCATCAGATTTAACAGTGTTAAATGAAAAAATTGAAAAAATGGAATTATTGATACAGAAATATAAAGAATCATTGAAGAGCACAAAAGACAAAAATTCTCAATTAATAACCGAATTGCAAATAATGACTAACAAGCTAGAAAACAAAAGTAAAGAAGTTGAAGAAGTCTCAATACTTAATGAAAAGTACAGAGACGCCAGTGCAAAGATAAAAGAGCTGGAAAATTTAAATGAAGAACTTCAAAATAAAATAAATTCTTATGATTTCAATAAATCGAAAAAAGTTTCTGAACTAGAAACGGATTTACAAAAGGCAAACGAAGAAGTCCAACACCTTCAAAAGAAAATAGAAGTATTTTCTAAGAGAGAAGAGGAATACGCTATTTCTCTAGCAGAGAATAAATTGAGCATCCATAAAGAATTGGAAAGTAAAGAATCCGAAATCAAATCGTTAAAACATAGTTTGACCGCTAGTAAAAAAGAAATACAATCTTTAAGTATTGTCGTCACTGACTATAAAAATAGCATAGAAGCACTCGAACAAGAAAAATCTAAATTAGTTATTGAGAATAGTGAGATAGCAACCTTGAAATCTAAAGTTGAAGAATTAGAAACACATCTACAAGAACTTAATAAAAAAAATCAAATTCAAGAACAACAACACACCAAATTGAATGAAGAATATAAATGCCTGCAGCTTCAATTAAAACAAGAAATGGCTGAAAAATTAGCTATGATGGACAGAAACGCCTATTTAGAAAACCGTATTTCCCAAATATCTGAAGAGAACTCGAAGAAAAGTTCTCAAGTTAATCAATTAGAATCTAAATTACAATCTTTACAAAATGATAAAAGTAACGAAAGCATTGGAAAAGAAAAAGAAATACTGACTGAGCTAAACATTTGGAAGTCCAAGTATGATAAGCTTGAATCAGAGATGCAGGAAGAAAGAGAAGAATTAGTTAAATTACAATCGGAAATAGAAAAGCTGATTGAAAATCACGAACATATTCAAAAACAAAATGTAGAATTTCGGACAACTATCTCGGATTTACAGGCTGAAACTTCAATTTTAAATCGACAACTAAGTCATTATAATAAAATAAAAAACGATACAAATAAAATATTGGCTGATGTGGGAAAACTACGCGAATTAATAAAGTTAACTTCGAAAGATATTTTCGCGAATGTAAAAGACCATGTGGATATGATTAAAACAATTAAAATAGACATTAACAATAATATAAAAGAACTTTCCAACAACGAGCATATCAATTATGTTAATAATGAGGAACTCCGAAATGAGTGTTTGTTACTTCAAAGAAACATAAATGACATAACAGCACTGCAATCTGAAACGAATAAAACTCAAACAAAATTAAAAGAAGAAAATGTCTCTTTAACTTTAACAATACAAAAACTTACTGCAGATTTACAGGAAAAAATTGATGTCGATGAAAAATATAGGAACGCGTCCAATGATTTAAATTCATTAAGAAGTGAAAATCAAAGACTCAGTGTACTTATAAAAGATTATGAAAATACTATACAAAATTTGCGTAATTCATTAGATTTACAAAAATCGCAGTTGTCCACACTACATGAAGAGGTAATTTGCCTTCGAAAAGAAAAAGAGCTCTTTGAAGAAAACTTAAACAAATTGCAGAATATTAACAAAGATTTGGCGTCAGAACAAGACAAACATAAAAACGCAATTGCAACAAATGTAGAAATGATTAATATTTTAAGAACTAAAAATGATGACTTGCTGGAAAAAAGCGATGAATTGAACAATAAGTTAATAAACTACCAACAACTAGAAGAACATCATAAGTTATTAACACAAGAAAACTCTTTTCTTAAAAGTCAAACTGAAAATATCGCAAGCAATGTACGAGAATTAGAATTCGAAATAAATGAAGTAAGAAAATCTCACTCTGCTATTGAATCAGAAAAAGAACATTTAAGTAATGTCATCGAACAAATAGAAAACCGACGTACATTGCTAGTTTCAAAAGATACACAAACAGAATACAACGAAATAGAAACGGAACTCGACAAAGAAAAAAACTTATCTAATATAAAGATAATAAATGAACTTAGCGAGAAGTATGATGCCTTAAAAGGAGAAAATAGACGGCTTTTGTCTGACATTGAAGGACTCCAAACACATTTAACGAAAACATCAAAAGAAAACAGCTTACTCAATGACAAACTCCGTGAGCAAATTGCAACAAGTGAAACAGGGAACTACATGTCCCATGATTTGAATAATGACATTCGGTTGGCTAAAGATAAAATTGATCACTTAACAAGGGAGAATACACTTTTAAATGAAGAAAACCTGGAACTAAAAGACCAGTTACAGTCACAGGAATATTGCAAACCTACAAATGCTGATCAGTGTTTTGAACACAAAGGGGAAAATGAGCTGTCTGAAATTAAAGAAAAATATTACACATTAATACTGGCTAATAGCAAAATAGAACAGAAAAACATTGATTTGGAACAATTGAACAGATCATTGAATGTTAACATCCAAGATGTACAAGCCAAAAACGAAAAATTGAAACTTTCGAATGAAAAAATAGAGCGCAGGCTCGATGAAGCTTTAGTTAGTTTAAGACATTTGCACTCTTTAGAAGAAAATACCGAGCTAGAATATTTAAGGAATATACTCTATGAATACCTTACAGGCTCAGGAACACATTCCATTACTTTAGCGAAAGTTTTAGCTGCAGTAGTCAAATTTGATGACAAGCAAACCCAAATGGTTCTTCAAAAAGAAAAAGAAAGACAAGGTTTTCTAAGGCAACTCCGACTCACGTGA
Protein
MFKKLKDKLAEEVKSSPQRIQQFAQAAQAAVTSASSSISDITNSDLFSIGENDSQTFHSTKSQPSTVSQSNTFRDVSPMQTTTTESTEYNSGQDLSQDNERQRRLSNSSFASDVSFRLPSYDTPMMYHLQSDIEVSASEAEERGLNGSTVSLDRVTKEQLYAAYKRTQERYKKYRTQYGDLARHYKLLERENTKARSVLVETQDKALRRISELREQCSLEQSAKAHLEKALRVEIEEKNMKIETLNTKIQFLSNSTSAEIPTNIVDNNKIIIDKDSNIPLINLVENETKVSNDESKLPVSSDLTVLNEKIEKMELLIQKYKESLKSTKDKNSQLITELQIMTNKLENKSKEVEEVSILNEKYRDASAKIKELENLNEELQNKINSYDFNKSKKVSELETDLQKANEEVQHLQKKIEVFSKREEEYAISLAENKLSIHKELESKESEIKSLKHSLTASKKEIQSLSIVVTDYKNSIEALEQEKSKLVIENSEIATLKSKVEELETHLQELNKKNQIQEQQHTKLNEEYKCLQLQLKQEMAEKLAMMDRNAYLENRISQISEENSKKSSQVNQLESKLQSLQNDKSNESIGKEKEILTELNIWKSKYDKLESEMQEEREELVKLQSEIEKLIENHEHIQKQNVEFRTTISDLQAETSILNRQLSHYNKIKNDTNKILADVGKLRELIKLTSKDIFANVKDHVDMIKTIKIDINNNIKELSNNEHINYVNNEELRNECLLLQRNINDITALQSETNKTQTKLKEENVSLTLTIQKLTADLQEKIDVDEKYRNASNDLNSLRSENQRLSVLIKDYENTIQNLRNSLDLQKSQLSTLHEEVICLRKEKELFEENLNKLQNINKDLASEQDKHKNAIATNVEMINILRTKNDDLLEKSDELNNKLINYQQLEEHHKLLTQENSFLKSQTENIASNVRELEFEINEVRKSHSAIESEKEHLSNVIEQIENRRTLLVSKDTQTEYNEIETELDKEKNLSNIKIINELSEKYDALKGENRRLLSDIEGLQTHLTKTSKENSLLNDKLREQIATSETGNYMSHDLNNDIRLAKDKIDHLTRENTLLNEENLELKDQLQSQEYCKPTNADQCFEHKGENELSEIKEKYYTLILANSKIEQKNIDLEQLNRSLNVNIQDVQAKNEKLKLSNEKIERRLDEALVSLRHLHSLEENTELEYLRNILYEYLTGSGTHSITLAKVLAAVVKFDDKQTQMVLQKEKERQGFLRQLRLT

Summary

Pfam
PF01465   GRIP
Interpro
IPR000237   GRIP_dom       
PDB
1UPT     E-value=0.000205636,     Score=111

Ontologies

Topology

Length:
1241
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.19297
Exp number, first 60 AAs:
0.00019
Total prob of N-in:
0.00001
outside
1  -  1241
 
 

Population Genetic Test Statistics

Pi
161.808927
Theta
156.944589
Tajima's D
-0.838211
CLR
18.771628
CSRT
0.171591420428979
Interpretation
Uncertain
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