Silkworm Genome Informatics Database

Gene

KWMTBOMO08977 Validated by peptides from experiments

Pre Gene Modal

BGIBMGA007790

Annotation

double-stranded_RNA-binding_zinc_finger_protein_JAZ_[Bombyx_mori]

Location

Bomo_Chr15(-):9128234-9141742 View in EpiBrowser

Location in the cell

Nuclear Reliability : 4.707

CDS

ATGAACAGCCGTGAAGAATATGAAATGAATGAAGATTGTGGCTGGACTGAAGAGCCACCTAGACTTCCGCGAAGAAAGATAAGGAATAACGAATACAGCAATGCATTTGGAAATTACAATGGGGGATATTGGTCTGACGACCAAGGTCCTGGACCGTTTGATCATCCACCAAGACCCCCTCCGAACTTCATGTTTGGACCAGGACCAGGACCAATGTTTGGGCCTTTACCCAATCAAAACCCATTCGGAAGAGGATTTGGTCCGGATGGCCCTGCTATGCGAAGACCTAACAGAGTGGAGAGAGTTAAAAGATATTTAATGCGTTGTGGACTTACAAAGGACAGTTTGAAAAACATTCCTAGAGAAATATTGCACAAAATAGAGCCTGAGTACTGTGGTGTTTGTGCTCTTGAATTGGACTCTTTTGGAATGTCTCGTTTGCATTACCTTTCAAAAAATCATGCGAAGAATCTGAGAAAATGGGTGTCGAAATCGAATGATGGTGGATCTAATCAGAAAGAGATTCCACTTAAATCACGTGAGTTGTATTGTGAGTTGTGTGATGTGCATATCACATCAAAATCTCATGCCGACTCGCATTATGCTGGAAGACCTCATCGTGCAGTGGTGGAGGGTCGCAAGAAGCCAAAAAATACTATTTTGTGTCAGAAGAGTATGGAAGGCCGGCTTGAGCAACTTATCCGTCGCGAGAAGAAGAATCTGAAACCCATAGAAGAAATTCAAGAAAATGAAGATGAAAAGGAAGCTAAGCCAATATCACCGGAGCTGTATTGTGAAATATGCAAGACTTCCATGACTTGCTCGGAGCAAATGACTATGCATCTTAATGGTAAACGCCATCTTACTAAAGAGAAACAGCACATCCTGAAAATGATGAAATGTGGATCCGAAAATGAAAAAAAACAGAAAGCTCCAGTGAAACAGGAAAAAACTGAAAAGTCTAATGATGAAACTGCCGCAGATTGTATAATTGTTGCAAATAAAGCGATTGATGTTGATACCGCCATTGATCTTTTGACTCAAGCCATTGACGAAGAAGACGTCGCGGAAATTACTGATGAAGGTTCAAAAACTGCTGAAGTTTCAAAAACGGCTGATGACGAAAATAATGCGAACAATGCAAAAGAAGGTGAGGGAGAAGGTGATCACGGTGATGCTGGTAATGCTGAGGAACCGAAGGAGGGCGAAGACGATTACGATTGGGGCAACGGAAGCGGCAACTGGGAAGATGCCCCTGGTGAAGAACTTTGA

Protein

MNSREEYEMNEDCGWTEEPPRLPRRKIRNNEYSNAFGNYNGGYWSDDQGPGPFDHPPRPPPNFMFGPGPGPMFGPLPNQNPFGRGFGPDGPAMRRPNRVERVKRYLMRCGLTKDSLKNIPREILHKIEPEYCGVCALELDSFGMSRLHYLSKNHAKNLRKWVSKSNDGGSNQKEIPLKSRELYCELCDVHITSKSHADSHYAGRPHRAVVEGRKKPKNTILCQKSMEGRLEQLIRREKKNLKPIEEIQENEDEKEAKPISPELYCEICKTSMTCSEQMTMHLNGKRHLTKEKQHILKMMKCGSENEKKQKAPVKQEKTEKSNDETAADCIIVANKAIDVDTAIDLLTQAIDEEDVAEITDEGSKTAEVSKTADDENNANNAKEGEGEGDHGDAGNAEEPKEGEDDYDWGNGSGNWEDAPGEEL

Similarity

Belongs to the tubulin family.

Uniprot

H9JE43 Q2F5Z3 A0A194RCE4 A0A212FAL6 A0A194PQC0

Pubmed

19121390 26354079 22118469

EMBL

BABH01002560 BABH01002561 DQ311279 ABD36224.1 KQ460615 KPJ13576.1 + More
AGBW02009451 OWR50785.1 KQ459602 KPI93330.1

Proteomes

UP000005204 UP000053240 UP000007151 UP000053268

PRIDE

H9JE43 Q2F5Z3

Pfam

PF00091 Tubulin + More
PF02558 ApbA

Interpro

IPR000217   Tubulin        + More
IPR036236   Znf_C2H2_sf
IPR036525   Tubulin/FtsZ_GTPase_sf
IPR017975   Tubulin_CS
IPR002452   Alpha_tubulin
IPR003604   Matrin/U1-like-C_Znf_C2H2
IPR003008   Tubulin_FtsZ_GTPase
IPR013332   KPR_N
IPR013087   Znf_C2H2_type

SUPFAM

SSF52490 SSF52490 + More
SSF57667 SSF57667

Gene 3D

3.40.50.1440

ProteinModelPortal

H9JE43 Q2F5Z3 A0A194RCE4 A0A212FAL6 A0A194PQC0

PDB

1ZU1 E-value=0.00230541, Score=97

KEGG

692886 no KO assigned | (RefSeq) double-stranded RNA-binding zinc finger protein JAZ

GO

GO:0005874 GO:0007017 GO:0008270 GO:0003676 GO:0005525 GO:0005737 GO:0003924 GO:0005200 GO:0016021 GO:0008677 GO:0042626 GO:0016887 GO:0008237 GO:0043565 GO:0016876 GO:0043039

PANTHER

PTHR11588

Subcellular location

Length:

423

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.0002

Exp number, first 60 AAs:

0

Total prob of N-in:

0.01451

outside

1 - 423

Pi

329.990348

Theta

187.262066

Tajima's D

-1.549806

CLR

19.291284

CSRT

0.0525473726313684

Interpretation

Uncertain

Source	Sequence	Identity	Evalue
26822097	QGISIDDIWQAR	100.00	0.003
26280517	SKYQNIQVFDTTSIGK	100.00	0.003
28467696	SNDAVDKYHECIRR	100.00	0.003
25044914	SGYVIQEGQAVIFADSVETMIQR	100.00	0.004

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics