Gene

KWMTBOMO08969

Pre Gene Modal

BGIBMGA007792

Annotation

ABC_transporter_[Bombyx_mori]

Location

Bomo_Chr15(-):9015657-9033392      View in EpiBrowser

Location in the cell

PlasmaMembrane   Reliability : 4.819

CDS

ATGAATAGTGATGGGAGAGCCGGAGAAAATTCTAGTGCTGAGAAGCGAAGGAAGCCCCATAAGCCGAACATTTTGTCTCGTATATTTCTATGGTGGATGTGCCCCGTACTCGTTAAAGGAAATCAAAGAGACATTGTCGAGGATGACCTCATAATTCCGAAAAAGTCATTTAATTCTGAAAATCAAGGAGAGTATTTAGAAAGGTATTGGCTCCAAGAATATGAAGCCGCGATAAAGGAGAAAAGGGAGCCGTCATTGTGGACAGCTTTACGAAAAGCTTACTGGTTGGGATACATGCCGGGAGCTATCTACTTGATAATCATATCTGTCTTCAGGATAATTCAGCCGCTAGTATTCGCCGAACTGCTTTCCTACTGGTCAGTAGAAGCAACTATAACTCGACTAGAAGCAAGCTATTATGCTCTAGCACTTTTAGGTATAAACTTCATTAATATGATGTGTCAACATCACAATTCATTGTTTGTAGCGCGCTTTGGACTCAAGGTTAAAGTGGCTTGCTCATCTTTAGTATATAGAAAGTTGTTGCGCATGGACCAAGTAGCCTTAGGAGATGTAAGCGGAGGGAAACTGGTGAACCTGTTATCTAATGATGTTGCTAGATTCGACTACGCATTCATGTTTTTGCACTACCTCTGGGTGGTACCAGTTCAAGCGGCTGTAGTATTATATTTCTTATATTATATTTCTGCGGGATACGCACCGTTCGTCGGCTTCTTTGGGGTTGTGATTTTAATTCTACCTATACAAGCTGGTCTCACAAAATTGACCTCTGTGGTCAGAAGAGAAACTGCTCAGAGAACCGACCGAAGGATAAAATTGATGACGGAAATTATTAATGGCATTCAGGTTATTAAAATGTACGCATGGGAGAAACCGTTCCAAGCAATCGTCAAGGTGGCAAGAAACTTCGAAATGATAGCACTCAGGAAGTCTATATTCATTCGGAGTGTTTTCCTTGGTTTCATGCTGTTCACTGAAAGAAGTATAATATTTATAACATGTTTGACATTGTTACTTACGGGTAACCTTGTTACAGCTACTCTGATTTACCCTATTCAACAATACATCAGCATTATTCAAATCAATTTGACTATGATACTGCCTCTTGCCATTGCAAGTTTGTCTGAAATGCTGGTCTCGTTGGAACGCATTCAAAATTTCTTGGTGAAAGATGAAAGAGAGGACGTCCAAATAACACCAAAATCTTATGGAGATGATAATAGATTGATTTTCAACAACAAGGCATCGCTTGGCCCTCAAAACGAAATTATCCCAAAGAAATATTTAGCCACCGATGGCCAACTTGCCTCAACATTAACGAATGAACCAGTGCTTCAAACTGACCCAGCCGTGTGTGACTATCCCATAGAATTATCTAAAGTAGACGCCACATGGTCGTCATCAACAGATACTTCAGAAATGACACTAAGGAATATTAGTCTCAGAATAGGCAGAGGCAAACTTTGTGCTATAATTGGACCTGTTGGATCAGGAAAGTCATCCATTTTGCAAGTTCTTCTGAAAGAACTGCCGGTTTGCGGTGGTAGCCTGAGAATAAATGGGAGGCTTTCCTACGCGTGTCAAGAGTCTTGGCTGTTCCCTGCTACTGTGAGAGAAAACATTTTGTTTGGTTTGCCGTACGAATCACAGAAATATCACGAGGTGTGTAAAGCTTGTTCGTTGCTTCCTGATTTCAAACAATTTCCGTACGGAGACCTCTCCTTAGTTGGAGAGCGAGGAGTATCCTTGTCAGGGGGACAGCGTGCCAGAATTAATCTCGCTAGGGCTGTTTACCGAGAGGCCGACATTTACTTGCTAGATGATCCTCTCTCAGCAGTGGACGCCAACGTTGGCAGGCAGCTGTTTGACGGCTGTATCAAAGGATATCTACGGGGTCGAACTTGTGTCCTTGTAACCCATCAAATCCACTATCTTAAAGCAGCTGACATTATTGTCATACTGAACGAGGGGGCAATTGAAAACGTTGGTAGCTACGATGATTTGGTCAAGACCGGAACAGAGTTTTCGAAGCTGTTGACTAATCAAGAAAGCAACGATAATGAGAATGGCCCGGAAAAGAATTTCTTACGGGCTATATCGAAAATATCTACTAAGAGTGTTGAAGATCCAGATAACGAGAAGGTACAAGTGGAGGAAGAAGAGAAACGTGCCAAAGGAAATTTGAAATTCTCTGTTTTATACAAGTATTTGTCTGCAGTGAAATCATGGTTTCTAGTATTTTTGATGGTAGCCACATTAGTTATCACACAAGGATGTGCGATGTTCATAGATTATTGGCTGAGTTTTTGGACAAATCAAGTTGATGAGTATGAACAATCTTTAGCTGAGGGAGAAGAACCGAGCACAAGTTTGGACACGCAAGCCGGAGCGTATACTTTAGGAGTATACCTTTGGACTTATGGCGGAGTCATCTTAATCCTCATAGTGATCAGTCACGTCAGAATTTTAACTTTCGTCATTACGACTATGAGAGCTTCATCTAATTTTCATGATACCGTTTACAAAAAGTTGATTATCACAGTTATGCGATTCTTTGACATGAATCCCTCAGGTCGTGTGTTGAATCGTTTTTCAAAGGATATGGGTGCGATGGACGAATTCCTTCCGAGGAGTTTATTTGAAACTGTTCAGATGTATTTAACATTATGCAGTATACTTATTTTAAATGCTATAGCATTACCGTGGACGTTGATCCCAACAGCGGTACTTTTGATTCTCTTCTTCTTTCTCCTGAAATGGTACTTAAATGCTGCTCAAGCTGTAAAAAGATTAGAAGGCACAACTAAGAGTCCAGTACTCGGCATGATCAACTCTACCCTCACAGGTCTGTCTACGATCCGAAGTTCTAATTCACAAGGACGACTGCTAGAAATGTTTGATAACGCACAGAATCTCCACACGAGTGCATTTTATACGTTTGTTGGTGGATCAACTGCATTTGGTTTATATCTGGATGCGCTTTGCTTAGTTTATTTGGGAGTGATATTGACGATCTTCCTTGTAATCGACTTCAGTACTTTAATTCCCGTCGGTAGCGTGGGCTTGGCTGTGAGTCAGTCTATGGTGTTAACGATGATGCTGCAAATGGCGGCTCGATTCACAGCCGACTTCCTCGGACAAATGACGGCTGTCGAGAGAGTTCTCGAATATACCGAGCTTCCGATGGAAGAAAACATGTATGATGGATCCCAACTTCCCAAGGACTGGCCTACACACGGTCATATTGAATTTCAAAATCTATTTTTGAACTATTCTCAAGAAGATCCACCAGTACTCAAAGATTTAAACTTTGTAATTGAGAATGGTTGGAAGGTTGGAGTAGTCGGTCGAACCGGTGCCGGCAAGTCTTCTATGATATCCGCACTGTTCAGGCTGTACGACCTGCAAGGACACATCAGAATAGACGGAATCGATACCAACATCATCGCTAAAACGGAGCTAAGATCGAAGATTTCTATCATACCACAAGAACCGATTTTGTTCTCTGCATCGGTGCGATACAATTTGGACCCCTTCGACAGTTATAGCGACGACGAAATTTGGAGAGCTTTGGAACAGGTTGAACTGAAAGAGGTAATTCCAGCGCTCGATTATAAAGTGTCAGAAGGCGGCAGCAACTTTTCCGTCGGTCAGCGACAACTGGTATGTTTGGCTCGAGCTGTTTTGCGTTCTAACAAAATCCTTGTAATGGACGAGGCGACAGCCAACGTTGATCCTCAAACTGACGCGTTGATTCAGACGACGATACGTCGCGAGTTTGCGTCATGTACGGTGATCACGATCGCGCACCGACTCAACACGATCATGGATTCTGATCGCGTCCTGGTCATGGACAAAGGAGTTGTTGCCGAATACGATACTCCTTATGCTCTGCTCTCCGACCCCAATTCGATCTTCAGCTCGATGGTGCGCGAAACAGGAGATACAATGAGCAAAGTCCTCTTCCGAGTGGCTGAAGATAAACATCTTGGTAGAAATACAGAAAAATGA

Protein

MNSDGRAGENSSAEKRRKPHKPNILSRIFLWWMCPVLVKGNQRDIVEDDLIIPKKSFNSENQGEYLERYWLQEYEAAIKEKREPSLWTALRKAYWLGYMPGAIYLIIISVFRIIQPLVFAELLSYWSVEATITRLEASYYALALLGINFINMMCQHHNSLFVARFGLKVKVACSSLVYRKLLRMDQVALGDVSGGKLVNLLSNDVARFDYAFMFLHYLWVVPVQAAVVLYFLYYISAGYAPFVGFFGVVILILPIQAGLTKLTSVVRRETAQRTDRRIKLMTEIINGIQVIKMYAWEKPFQAIVKVARNFEMIALRKSIFIRSVFLGFMLFTERSIIFITCLTLLLTGNLVTATLIYPIQQYISIIQINLTMILPLAIASLSEMLVSLERIQNFLVKDEREDVQITPKSYGDDNRLIFNNKASLGPQNEIIPKKYLATDGQLASTLTNEPVLQTDPAVCDYPIELSKVDATWSSSTDTSEMTLRNISLRIGRGKLCAIIGPVGSGKSSILQVLLKELPVCGGSLRINGRLSYACQESWLFPATVRENILFGLPYESQKYHEVCKACSLLPDFKQFPYGDLSLVGERGVSLSGGQRARINLARAVYREADIYLLDDPLSAVDANVGRQLFDGCIKGYLRGRTCVLVTHQIHYLKAADIIVILNEGAIENVGSYDDLVKTGTEFSKLLTNQESNDNENGPEKNFLRAISKISTKSVEDPDNEKVQVEEEEKRAKGNLKFSVLYKYLSAVKSWFLVFLMVATLVITQGCAMFIDYWLSFWTNQVDEYEQSLAEGEEPSTSLDTQAGAYTLGVYLWTYGGVILILIVISHVRILTFVITTMRASSNFHDTVYKKLIITVMRFFDMNPSGRVLNRFSKDMGAMDEFLPRSLFETVQMYLTLCSILILNAIALPWTLIPTAVLLILFFFLLKWYLNAAQAVKRLEGTTKSPVLGMINSTLTGLSTIRSSNSQGRLLEMFDNAQNLHTSAFYTFVGGSTAFGLYLDALCLVYLGVILTIFLVIDFSTLIPVGSVGLAVSQSMVLTMMLQMAARFTADFLGQMTAVERVLEYTELPMEENMYDGSQLPKDWPTHGHIEFQNLFLNYSQEDPPVLKDLNFVIENGWKVGVVGRTGAGKSSMISALFRLYDLQGHIRIDGIDTNIIAKTELRSKISIIPQEPILFSASVRYNLDPFDSYSDDEIWRALEQVELKEVIPALDYKVSEGGSNFSVGQRQLVCLARAVLRSNKILVMDEATANVDPQTDALIQTTIRREFASCTVITIAHRLNTIMDSDRVLVMDKGVVAEYDTPYALLSDPNSIFSSMVRETGDTMSKVLFRVAEDKHLGRNTEK

Uniprot

G1UHW7   G1UHW8   I1VH51   A0A0K1SB04   A0A0K1SB50   D8V116   + More
A0A2A4JM73   A0A2H1WJQ9   A0A1Z2RPL3   A0A2H4YHT1   A0A2H4YHT5   A0A2K9P5A5   A0A2H4YHR9   D8V119   A0A2H4YHT2   A0A2H4YHR7   A0A2H4YHT7   A0A0B4ZS88   A0A088C848   A0A2L1K5C6   A0A060D135   A0A1B0RHN5   A0A3G1PY78   A0A1B0RHP5   A0A1N7TA09   A0A2H4YHV2   A0A2H4YHS1   A0A2H4YHT4   A0A2H4YHU4   A0A0B4ZX17   R9WPG7   G3JWY5   A0A0E3ZDK3   A0A097DCY9   A0A0B4ZYY9   A0A3S2LNC5   G3JWY1   A0A194PJX3   G3JWY2   A0A212FDD7   A0A223PQG6   A0A060D4Q3   A0A0F6PPP5   A0A088C894   A0A0F6PQI8   A0A3G1PY80   A0A2K9P5C0   A0A060DA23   A0A060DAW3   A0A212FDE8   A0A2A4JLC9   A0A0B4ZWR3   A0A0E3ZCM1   A0A194R7E2   A0A3S2PG34   A0A223PQF2   A0A194PJ23   A0A0B4ZTU5   G1UHY0   A0A0E3UUF7   A0A3G1PY98   A0A3S2TFR5   A0A2H1X0D3   A0A2H1WJI9   D6WK76   A0A2H4KAX0   A0A146LDV6   A0A0C9PVS6   A0A2M4B9I8   A0A3R5SMP1   A0A2A4K8A3   A0A158V0F7   A0A182FEZ4   A0A0P4W3Q5   A0A0V0G5R1   K7IU38   A0A3L8DIP4   A0A1Y1N3T5   F4X6C1   A0A1Y1MZC5   A0A151ILB5   A0A1I8NI62   W5JPP8   A0A0L0CKR5   A0A1I8Q0X0   A0A2A3EMT6   B4JUQ0   A0A1L8DUP6   Q7Q5I0   A0A1L8DV41   A0A0L0CGT9   A0A3L8DIZ7   A0A1S4GS60   A0A158NLW9   A0A1I8NAJ3   A0A182RML1   T1PE30   A0A1I8Q3P7   A0A1J1ITZ7   A0A1Q3F1A4  

Pubmed

22635270    28736301    25154974    29422629    21840855    25875245    + More
26354079    22118469    25662100    18362917    19820115    26823975    27129103    20075255    30249741    28004739    21719571    25315136    20920257    23761445    26108605    17994087    12364791    21347285   

EMBL

AB620074    BAK82126.1    AB620075    BAK82127.1    JQ774504    AFI44049.1    + More
KP400523    AKV71230.1    KP400524    AKV71231.1    GQ332571    ADH16740.1    NWSH01001057    PCG72886.1    ODYU01009083    SOQ53247.1    KY489760    ASA45739.1    MG387056    AUE23770.1    MG387055    AUE23769.1    KY646296    AUO38740.1    MG387043    AUE23766.1    GQ332573    ADH16744.1    MG387057    AUE23771.1    MG387051    AUE23768.1    MG387058    AUE23772.1    KJ930171    AJD79136.1    KF479231    AHL68986.1    MF929077    AVE17269.1    KF926099    AIB06821.1    KM360184    AKH49600.1    KY701524    AVV62499.1    KM360192    AKH49608.1    KM068116    AJY53612.1    MG387063    AUE23774.1    MG387050    AUE23767.1    MG387068    AUE23775.1    MG387062    AUE23773.1    KJ930167    AJD79134.1    KC758896    AGO01048.1    JN030495    AEI27596.1    KM245561    AKC96180.1    KM103521    AIS93186.1    KJ930169    AJD79135.1    RSAL01000049    RVE50388.1    JN030490    AEI27592.1    KQ459602    KPI93323.1    JN030491    AEI27593.1    AGBW02009058    OWR51775.1    KX710207    ASU47347.1    KF926100    AIB06822.1    KM232756    AKC34055.1    KF479232    AHL68987.1    KM250380    AKC34056.1    AVV62500.1    KY646297    AUO38741.1    KF926101    AIB06823.1    KF926102    AIB06824.1    OWR51776.1    PCG72885.1    KJ930170    AJD79133.1    KM245562    AKC96181.1    KQ460615    KPJ13567.1    RVE50389.1    KX710208    ASU47346.1    KPI93322.1    KJ930168    AJD79132.1    AB621548    BAK86406.1    KM245560    AKC96179.1    AVV62497.1    RSAL01000187    RVE44791.1    ODYU01012016    SOQ58094.1    SOQ53245.1    KQ971342    EFA03948.2    KY484779    ASS36021.1    GDHC01020387    GDHC01013422    JAP98241.1    JAQ05207.1    GBYB01005573    JAG75340.1    GGFJ01000531    MBW49672.1    MH172501    QAA95908.1    NWSH01000076    PCG79892.1    KF828786    AIN44103.1    GDKW01000545    JAI56050.1    GECL01002731    JAP03393.1    AAZX01002657    QOIP01000007    RLU20304.1    GEZM01016983    GEZM01016981    JAV90996.1    GL888807    EGI58005.1    GEZM01016982    JAV90994.1    KQ977121    KYN05546.1    ADMH02000892    ETN64739.1    JRES01000264    KNC32832.1    KZ288215    PBC32516.1    CH916374    EDV91220.1    GFDF01003930    JAV10154.1    AAAB01008960    EAA10720.3    GFDF01003929    JAV10155.1    JRES01000405    KNC31638.1    RLU20387.1    ADTU01019789    ADTU01019790    KA646208    AFP60837.1    CVRI01000059    CRL03663.1    GFDL01013712    JAV21333.1   

Proteomes

UP000218220    UP000283053    UP000053268    UP000007151    UP000053240    UP000007266    + More
UP000069272    UP000002358    UP000279307    UP000007755    UP000078542    UP000095301    UP000000673    UP000037069    UP000095300    UP000242457    UP000001070    UP000007062    UP000005205    UP000075900    UP000183832   

PRIDE

G1UHW7    G1UHW8    I1VH51    G1UHY0   

Pfam

PF00664   ABC_membrane        + More
PF00005   ABC_tran

Interpro

IPR003593   AAA+_ATPase        + More
IPR017871   ABC_transporter_CS       
IPR003439   ABC_transporter-like       
IPR036640   ABC1_TM_sf       
IPR027417   P-loop_NTPase       
IPR011527   ABC1_TM_dom       
IPR000788   RNR_lg_C       
IPR029063   SAM-dependent_MTases       

SUPFAM

SSF90123   SSF90123        + More
SSF52540   SSF52540       
SSF53335   SSF53335       

Gene 3D

1.20.1560.10    

ProteinModelPortal

G1UHW7   G1UHW8   I1VH51   A0A0K1SB04   A0A0K1SB50   D8V116   + More
A0A2A4JM73   A0A2H1WJQ9   A0A1Z2RPL3   A0A2H4YHT1   A0A2H4YHT5   A0A2K9P5A5   A0A2H4YHR9   D8V119   A0A2H4YHT2   A0A2H4YHR7   A0A2H4YHT7   A0A0B4ZS88   A0A088C848   A0A2L1K5C6   A0A060D135   A0A1B0RHN5   A0A3G1PY78   A0A1B0RHP5   A0A1N7TA09   A0A2H4YHV2   A0A2H4YHS1   A0A2H4YHT4   A0A2H4YHU4   A0A0B4ZX17   R9WPG7   G3JWY5   A0A0E3ZDK3   A0A097DCY9   A0A0B4ZYY9   A0A3S2LNC5   G3JWY1   A0A194PJX3   G3JWY2   A0A212FDD7   A0A223PQG6   A0A060D4Q3   A0A0F6PPP5   A0A088C894   A0A0F6PQI8   A0A3G1PY80   A0A2K9P5C0   A0A060DA23   A0A060DAW3   A0A212FDE8   A0A2A4JLC9   A0A0B4ZWR3   A0A0E3ZCM1   A0A194R7E2   A0A3S2PG34   A0A223PQF2   A0A194PJ23   A0A0B4ZTU5   G1UHY0   A0A0E3UUF7   A0A3G1PY98   A0A3S2TFR5   A0A2H1X0D3   A0A2H1WJI9   D6WK76   A0A2H4KAX0   A0A146LDV6   A0A0C9PVS6   A0A2M4B9I8   A0A3R5SMP1   A0A2A4K8A3   A0A158V0F7   A0A182FEZ4   A0A0P4W3Q5   A0A0V0G5R1   K7IU38   A0A3L8DIP4   A0A1Y1N3T5   F4X6C1   A0A1Y1MZC5   A0A151ILB5   A0A1I8NI62   W5JPP8   A0A0L0CKR5   A0A1I8Q0X0   A0A2A3EMT6   B4JUQ0   A0A1L8DUP6   Q7Q5I0   A0A1L8DV41   A0A0L0CGT9   A0A3L8DIZ7   A0A1S4GS60   A0A158NLW9   A0A1I8NAJ3   A0A182RML1   T1PE30   A0A1I8Q3P7   A0A1J1ITZ7   A0A1Q3F1A4  

PDB

5UJA     E-value=0,     Score=1644

KEGG

100862790    K05673 ATP-binding cassette, subfamily C (CFTR/MRP), member 4 | (RefSeq) ABC transporter

PATHWAY

02010    ABC transporters - Bombyx mori (domestic silkworm)

GO

GO:0016021   GO:0042626   GO:0005524   GO:0055085   GO:0016020   GO:0006260   GO:0055114   GO:0006810   GO:0016887   GO:0008237   GO:0008270   GO:0043565   GO:0016876   GO:0043039  

Length:

1343

Number of predicted TMHs:

11

Exp number of AAs in TMHs:

249.379030000001

Exp number, first 60 AAs:

0.07952

Total prob of N-in:

0.98516

inside

1  -  92

TMhelix

93  -  115

outside

116  -  129

TMhelix

130  -  152

inside

153  -  211

TMhelix

212  -  234

outside

235  -  243

TMhelix

244  -  266

inside

267  -  336

TMhelix

337  -  359

outside

360  -  362

TMhelix

363  -  385

inside

386  -  749

TMhelix

750  -  772

outside

773  -  807

TMhelix

808  -  830

inside

831  -  898

TMhelix

899  -  921

outside

922  -  993

TMhelix

994  -  1016

inside

1017  -  1022

TMhelix

1023  -  1045

outside

1046  -  1343

 

 

Pi

183.412551

Theta

156.088605

Tajima's D

0.601206

CLR

0.034426

CSRT

0.544472776361182

Interpretation

Possibly Positive selection