Gene

KWMTBOMO08961  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA007795

Annotation

ribosomal_protein_L30_[Bombyx_mori]

Location

Bomo_Chr15(-):8878440-8879922      View in EpiBrowser

Full name

60S ribosomal protein L30      

Location in the cell

Mitochondrial   Reliability : 2.017

CDS

ATGGTTGCAGCAAAGAAACAGAAAAAGACCATCGAGTCAATTAACTCCCGCCTTGCTTTGGTGATGAAATCGGGAAAATATTGCTTAGGATACAAGCAAACTTTGAAAACTCTTCGACAAGGCAAAGCAAAGCTGGTTATCATCGCTAAAAATGCTCCTCCGCTAAGGAAATCTGAGATTGAATACTACGCCCTCCTAGCTAAGACAGGTGTTCACCACTACAGCGGGAACAACATTGAATTAGGAACAGCATGCGGAAAATACTACAGAGTGTGCACACTCGCCATCACAGACCCTGGTGACTCGGACATTATCACCACTTTGCCTGAAGCATCAGCCTAG

Protein

MVAAKKQKKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPLRKSEIEYYALLAKTGVHHYSGNNIELGTACGKYYRVCTLAITDPGDSDIITTLPEASA

Similarity

Belongs to the eukaryotic ribosomal protein eL30 family.

Keywords

Ribonucleoprotein   Ribosomal protein  

Feature

chain  60S ribosomal protein L30

Uniprot

Q5UAQ8   I4DML8   A0A194RCC9   E7DZ37   D1LYM2   S4NT12   + More
A0A212EYB9   I4DJ22   A0A1E1WK40   G3LHK1   G0ZEF5   A0A2A4JS99   E3UPC7   A0A2H1VAQ6   P58375   A0A0L7LQM9   A0A1W4X837   A0A1Y1LHY6   Q1HR35   A0A023EF46   C6ZQM8   A0A2M3YXI6   A0A2M3ZZ12   A0A2M4C3V1   W5JUR7   A0A336MMD8   A0A336LE25   A0A1B6KNE0   U5EZ44   A0A1B6E3V6   A0A1Q3FU80   A0A1B6IQF9   A0A1L8DRL8   A0A182JGK0   A0A1B6F9L4   D7EI38   A0A182F9F1   A0A182NFV8   A0A1J1IF98   A0A182T774   A0A182M304   U5EUI6   A0A182P768   A0A182TFV4   A0A182LAN5   A0A182WV40   Q7PS97   A0A182I8R4   A0A146LHN1   V5GGJ3   A0A182R5Y7   A0A067RAU1   A0A437BJ32   A0A182QSQ3   A0A182JPF3   A0A1V9X2T6   A0A084VC10   A0A2P8ZF97   A0A1D1XRJ9   J3JYC9   A0A182XXC3   A8U9W1   R4WD63   K7J6J6   D1M816   Q8ITC5   A0A2R7W4T6   A8UGA5   A0A131XNC4   A0A224XTQ4   R4G3Y3   A8E689   A0A0A9WXX3   Q6DEP8   Q6GNF2   A0A164L7P5   E9HUV1   Q7SZC0   A0A224YUB8   Q4PMD6   Q6B8A6   A0A131YAJ7   A0A131YR71   A0A023FTH5   A0A1E1X029   A0A023FEZ4   T1FHU5   T1IYV6   A0A0P5LF50   B5M6F8   A0A0P5F7H5   A0A0N8AB17   A0A0J7L0C8   E2BPH8   A0A158NAE3   E2ARN3   A0A026WWT3   A0A1S3JTR5   A0A218V615   A0A3M0KUP2  

Pubmed

19121390    22651552    26354079    23622113    22118469    21840855    + More
14668217    26227816    28004739    17204158    17519023    17510324    24945155    26483478    20496585    20920257    23761445    18362917    19820115    20966253    12364791    14747013    17210077    26823975    24845553    28327890    24438588    29403074    22516182    23537049    25244985    17921486    23691247    20075255    28049606    17725830    25401762    27762356    21292972    28797301    16431279    16102420    26830274    28503490    23254933    20798317    21347285    24508170    30249741   

EMBL

BABH01002590    AY769300    AAV34842.1    AK402536    BAM19158.1    KQ460615    + More
KPJ13561.1    HQ424740    ADT80684.1    GU084296    ACY95329.1    GAIX01012356    JAA80204.1    AGBW02011580    OWR46457.1    AK401290    KQ459602    BAM17912.1    KPI93317.1    GDQN01003675    JAT87379.1    JN383804    AEN04480.1    JF265033    AEL28864.1    NWSH01000740    PCG74484.1    HM536611    ADO95150.1    ODYU01001532    SOQ37876.1    AF400193    JTDY01000315    KOB77735.1    GEZM01057049    JAV72478.1    DQ440259    EF173369    CH477331    CH477325    ABF18292.1    ABM68592.1    EAT43319.1    EAT43481.1    EJY57569.1    JXUM01062248    GAPW01006178    KQ562191    JAC07420.1    KXJ76449.1    EZ114829    ACU30882.1    GGFM01000236    MBW20987.1    GGFK01000476    MBW33797.1    GGFJ01010842    MBW59983.1    ADMH02000438    ETN66499.1    UFQT01001481    SSX30741.1    UFQS01003476    UFQT01003476    SSX15674.1    SSX35033.1    GEBQ01027031    JAT12946.1    GANO01001459    JAB58412.1    GEDC01004682    JAS32616.1    GFDL01004062    JAV30983.1    GECU01018547    JAS89159.1    GFDF01004981    JAV09103.1    GECZ01023186    JAS46583.1    DS497673    EFA13254.1    CVRI01000048    CRK98941.1    AXCM01001575    GANO01001453    JAB58418.1    AAAB01008844    EAA05968.6    APCN01003108    GDHC01011600    JAQ07029.1    GALX01005372    JAB63094.1    KK852772    KDR16830.1    RSAL01000049    RVE50396.1    AXCN02000249    MNPL01027751    OQR67701.1    ATLV01009970    KE524560    KFB35504.1    PYGN01000075    PSN55179.1    GDJX01022903    JAT45033.1    BT128255    KB632390    AEE63215.1    ERL94461.1    EU116867    ABW90362.1    AK417254    BAN20469.1    AAZX01001318    GU120440    ACY71290.1    AF526198    AAN05584.1    KK854330    PTY14734.1    EU125024    ABW23229.1    GEFH01000943    JAP67638.1    GFTR01001902    JAW14524.1    ACPB03002109    GAHY01001266    JAA76244.1    BN001038    CAL69076.1    GBHO01031020    GBRD01007743    GDHC01018040    JAG12584.1    JAG58078.1    JAQ00589.1    BC077047    AAH77047.1    BC073560    CM004476    AAH73560.1    OCT77027.1    LRGB01003164    KZS03861.1    GL732825    EFX64469.1    BC053758    CM004477    AAH53758.1    OCT74909.1    GFPF01009369    MAA20515.1    DQ066191    AAY66828.1    AY674241    AAT92174.1    GEFM01000228    JAP75568.1    GEDV01006803    JAP81754.1    GBBL01002353    JAC24967.1    GFAC01006591    JAT92597.1    GBBK01004370    GBBK01004369    GBBK01004368    GBBK01004367    JAC20112.1    AMQM01008001    KB097710    ESN91187.1    JH431701    GDIQ01170524    JAK81201.1    EU979509    ACH48212.1    GDIQ01266892    JAJ84832.1    GDIP01165001    JAJ58401.1    LBMM01001483    KMQ96242.1    GL449633    EFN82382.1    ADTU01010268    GL442157    EFN63895.1    KK107077    QOIP01000010    EZA60517.1    RLU17727.1    MUZQ01000042    OWK61464.1    QRBI01000104    RMC15114.1   

Proteomes

UP000005204    UP000053240    UP000007151    UP000053268    UP000218220    UP000037510    + More
UP000192223    UP000008820    UP000069940    UP000249989    UP000000673    UP000075880    UP000007266    UP000069272    UP000075884    UP000183832    UP000075901    UP000075883    UP000075885    UP000075902    UP000075882    UP000076407    UP000007062    UP000075840    UP000075900    UP000027135    UP000283053    UP000075886    UP000075881    UP000192247    UP000030765    UP000245037    UP000030742    UP000076408    UP000002358    UP000015103    UP000186698    UP000076858    UP000000305    UP000015101    UP000036403    UP000008237    UP000005205    UP000000311    UP000053097    UP000279307    UP000085678    UP000197619    UP000269221   

PRIDE

Q5UAQ8    P58375   

Pfam

PF01248   Ribosomal_L7Ae

Interpro

IPR039109   L30/L30e/YlxQ        + More
IPR029064   L30e-like       
IPR004038   Ribosomal_L7Ae/L30e/S12e/Gad45       
IPR000231   Ribosomal_L30e       
IPR022991   Ribosomal_L30e_CS       

SUPFAM

SSF55315   SSF55315       

Gene 3D

3.30.1330.30    

ProteinModelPortal

Q5UAQ8   I4DML8   A0A194RCC9   E7DZ37   D1LYM2   S4NT12   + More
A0A212EYB9   I4DJ22   A0A1E1WK40   G3LHK1   G0ZEF5   A0A2A4JS99   E3UPC7   A0A2H1VAQ6   P58375   A0A0L7LQM9   A0A1W4X837   A0A1Y1LHY6   Q1HR35   A0A023EF46   C6ZQM8   A0A2M3YXI6   A0A2M3ZZ12   A0A2M4C3V1   W5JUR7   A0A336MMD8   A0A336LE25   A0A1B6KNE0   U5EZ44   A0A1B6E3V6   A0A1Q3FU80   A0A1B6IQF9   A0A1L8DRL8   A0A182JGK0   A0A1B6F9L4   D7EI38   A0A182F9F1   A0A182NFV8   A0A1J1IF98   A0A182T774   A0A182M304   U5EUI6   A0A182P768   A0A182TFV4   A0A182LAN5   A0A182WV40   Q7PS97   A0A182I8R4   A0A146LHN1   V5GGJ3   A0A182R5Y7   A0A067RAU1   A0A437BJ32   A0A182QSQ3   A0A182JPF3   A0A1V9X2T6   A0A084VC10   A0A2P8ZF97   A0A1D1XRJ9   J3JYC9   A0A182XXC3   A8U9W1   R4WD63   K7J6J6   D1M816   Q8ITC5   A0A2R7W4T6   A8UGA5   A0A131XNC4   A0A224XTQ4   R4G3Y3   A8E689   A0A0A9WXX3   Q6DEP8   Q6GNF2   A0A164L7P5   E9HUV1   Q7SZC0   A0A224YUB8   Q4PMD6   Q6B8A6   A0A131YAJ7   A0A131YR71   A0A023FTH5   A0A1E1X029   A0A023FEZ4   T1FHU5   T1IYV6   A0A0P5LF50   B5M6F8   A0A0P5F7H5   A0A0N8AB17   A0A0J7L0C8   E2BPH8   A0A158NAE3   E2ARN3   A0A026WWT3   A0A1S3JTR5   A0A218V615   A0A3M0KUP2  

PDB

3VI6     E-value=2.67261e-46,     Score=460

KEGG

692705    K02908 large subunit ribosomal protein L30e | (RefSeq) RpL30; ribosomal protein L30

PATHWAY

03010    Ribosome - Bombyx mori (domestic silkworm)

GO

GO:0006412   GO:0003735   GO:0003723   GO:0005840   GO:0022625   GO:0016021   GO:0061844   GO:0050829   GO:0031640   GO:0005634   GO:0002181   GO:0014069   GO:0042788   GO:0005622   GO:0008237   GO:0008270   GO:0043565   GO:0016876   GO:0043039  

PANTHER

PTHR11449:SF12   PTHR11449  

Length:

113

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00568999999999999

Exp number, first 60 AAs:

0.00406

Total prob of N-in:

0.77543

inside

1  -  113

 

 

Pi

188.355146

Theta

162.344519

Tajima's D

0.503855

CLR

0.329513

CSRT

0.512724363781811

Interpretation

Uncertain