Silkworm Genome Informatics Database

Gene

KWMTBOMO08947

Pre Gene Modal

BGIBMGA007802

Annotation

Homeobox_protein_aristaless-like_4_[Papilio_xuthus]

Location

Bomo_Chr15(-):8618665-8625277 View in EpiBrowser

Transcription factor

Homeobox

Location in the cell

Nuclear Reliability : 4.555

CDS

ATGTACCTAAATCTCGGCTGGGCCGAGGCAAGCACGGGGCCGAGCATCAGCGAGATCTTCGCGACGGAGTCCAGCGAGGTGGGCGCGGAGGTAGCGGGCCCGCACCCGCCGCCACCCGACGGCTATATGTACGTGTGCGGGGATGGAGCCCTAGGGCCGGCCGCTCGCTACGAGTGTGCCTTCGAACAAGCACCGGCTTCCATGGAACAACCACCCTTTGACGAACAGATGTTTACTGATTTCGGAAAAGATCGACACGTTCAGGTGGTCGTCGGATCCGTTGGTGAACTCCAATACAGGGATGATATGCCAGTGTATAGCGGAGGACCCGATCAAAAACGAAAGGAGGAACCGTTACTACTTCAAACAGTAGATTCATCACCGGCAACTCATCCACCTCCGCCGCCTCCTCCTACATCAAAAAAGAGTGATAAAAAGAAAAATGATAATAATGGAATCAAGAAAAAAAAGACACGTACCACATTTACTGCTTATCAATTAGAAGAATTGGAACGAGCTTTCGAAAGAGCCCCTTACCCAGATGTGTTCGCCAGAGAAGAATTAGCTCTCAAGCTCAATTTGTCCGAATCACGTGTACAGGTTTGGTTCCAAAATAGAAGAGCGAAATGGCGCAAACGTGAACCACCACGAAAAACTGGTTATATTGGATCTAGTTCACCCAGTTCTACCACATTAGGAGGAGGGTTCTCCGGTATCGGCAGTAATCTACCAGCGTTTCCTCAAAACGGAATTCCGGCTCCGGCAGACTCATGGTCTTATCAACATTCCTATGAGTTATCGTCACATCATTTACTGTCCTCTAGCAGCAGTGGATATCCGGGATTTAATACTCAGCCAGCGTACACCTATACAACAGTACTCAACGGTCACGATGGACAAATGTTCGCACCTAGGCACTCTTATGAGTATGGCGAAGGCAGTCCGCCGCCACTAGGGGTGAGAGATTATCCAATGATGGCGGCGCATTCACCGCAAATGGAAGCTCACGGTCATGACGACAAACTTGAATATCGGGCTCATGACCACGAAGACAAATACAATGCGTGCGCCCTACAAGATGAGCCGCCGCGTTACGCAGGACCTCCTGAGGACTATGAAAAATGTGGTATAGTGACCCATGAGAAACACTACGAAATGGATCGTCACTCGGAGTTATCACAGCCAGTGGTTGTTAAAATGGAACCGAGTCCCAGCCAGGCCTACACCACCCTGCCCCCTTTTTTGAATTGA

Protein

MYLNLGWAEASTGPSISEIFATESSEVGAEVAGPHPPPPDGYMYVCGDGALGPAARYECAFEQAPASMEQPPFDEQMFTDFGKDRHVQVVVGSVGELQYRDDMPVYSGGPDQKRKEEPLLLQTVDSSPATHPPPPPPPTSKKSDKKKNDNNGIKKKKTRTTFTAYQLEELERAFERAPYPDVFAREELALKLNLSESRVQVWFQNRRAKWRKREPPRKTGYIGSSSPSSTTLGGGFSGIGSNLPAFPQNGIPAPADSWSYQHSYELSSHHLLSSSSSGYPGFNTQPAYTYTTVLNGHDGQMFAPRHSYEYGEGSPPPLGVRDYPMMAAHSPQMEAHGHDDKLEYRAHDHEDKYNACALQDEPPRYAGPPEDYEKCGIVTHEKHYEMDRHSELSQPVVVKMEPSPSQAYTTLPPFLN

Uniprot

H9JE55 A0A0L7LDF8 A0A194PKP5 A0A194R7R0 A0A212FGU3 A0A3S2NKE0 + More
A0A2A4JEM5 A0A2H1X0N3 D6WMA5 A0A1B6EB96 A0A0C9QPG9

Pubmed

19121390 26227816 26354079 22118469 18362917 19820115 + More

EMBL

BABH01002608 JTDY01001590 KOB73439.1 KQ459602 KPI93304.1 KQ460615 + More
KPJ13549.1 AGBW02008599 OWR52940.1 RSAL01000370 RVE42144.1 NWSH01001761 PCG70226.1 ODYU01012526 SOQ58889.1 KQ971343 EFA04590.1 GEDC01002103 JAS35195.1 GBYB01005509 JAG75276.1

Proteomes

UP000005204 UP000037510 UP000053268 UP000053240 UP000007151 UP000283053 + More
UP000218220 UP000007266

PRIDE

H9JE55

Pfam

PF00046 Homeodomain

Interpro

IPR017970   Homeobox_CS        + More
IPR001356   Homeobox_dom
IPR009057   Homeobox-like_sf

SUPFAM

SSF46689 SSF46689

CDD

cd00086 homeodomain

ProteinModelPortal

H9JE55 A0A0L7LDF8 A0A194PKP5 A0A194R7R0 A0A212FGU3 A0A3S2NKE0 + More
A0A2A4JEM5 A0A2H1X0N3 D6WMA5 A0A1B6EB96 A0A0C9QPG9

PDB

3LNQ E-value=4.59606e-20, Score=241

KEGG

101736411 no KO assigned | (RefSeq) retinal homeobox protein Rx3

GO

GO:0043565 GO:0006355 GO:0005634 GO:0003677 GO:0000981 GO:0000977 GO:0031012 GO:0005509 GO:0008237 GO:0008270 GO:0016876 GO:0043039

Subcellular location

Nucleus

Length:

416

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00325

Exp number, first 60 AAs:

0.00017

Total prob of N-in:

0.00278

outside

1 - 416

Pi

226.685475

Theta

194.086558

Tajima's D

0.856321

CLR

0.842905

CSRT

0.617469126543673

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics