SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO08942
Annotation
PREDICTED:_uncharacterized_protein_LOC106138993_[Amyelois_transitella]
Location in the cell
Nuclear   Reliability : 3.261
 

Sequence

CDS
ATGGCTCCTAAGAAGAATAATGATAGTGATGAAAGAGAAGACGTTGAGGTGCATATCTCGTTTCGTGATTTGGAGCAGTCCATGACACCTTTCACCGGAGATGATACTTACCCGATTTCGGAGTTTTTTGATGAATTTGAAGATGTTGCTGATTTGATGAAGTGGACTAAAGTGGAAAGATTGATCTATGCAAAGAAACTTTTGGGTGGAACAGCAAAGCTATTTTTAAGATCTATTGGTAGAGCTAAAGACTATCCTACTTTGAAGGAAGCCCTTATTGAAGAATTTGGCCCTAAGTTTAATAGTGCTAAGATTCACAAGAGCCTTATTTCACGAAAGATAAAAAATGATGAAACGTTACAACAATATTTTTTAGTTATGAAAGAAATAGCAGTGCATGGAAGAGTAGATGATGCTGCTTTAATGGAATACGTTATAGATGGTATCAATGATCCTGAATCTAACAAAGCAATTTTATATGGAGCTACAGATTTGAAAGATTTTCGAAAGAAGCTAGACATTTACAGTGATTTTCGAAAGAAGCTGGACGTTTACAGTGATCTTCAAAAGAAAATGAGTACACTATCATATCACCAGGTAGTTCCGCAAGTAAATTCAGATGCAGGGACAACGTCATTAAGAAAACCGCATTTTAAAAGATGCTATAACTGTGGTGATTTAGACCATCAATCCCCCGGCTGTACAAAGGGCATTAAATACTTTAAGTGTAATGGATTCGGTCACAAGGGAAACGAATGTAAGAATGAAGTTAAGAAGTCTTTAATTATTCAGAAGAAAAACGAAGAAGAAAAAATCCCTTACAAGAAAGTGTTATTGAATAGAACAGAGATGGTGGCTTTGATCGATACAGGTAGTGACGCGAATCTTATTAAACATTCAGAATTTGAAAAAATTGAAAATAATATCCAACATTATGACAAGAATTCAGAAGTTCGTCTTACTGGTATTGCTAACAAAGAAATACTTATCAAAGGTGTTTTTACTACTCAGCTACATATTGATAATGCTGTTACTGATATCAAATTTTACATTGTGGAAGATGATATAATACCTGTAAAGCTGATCATTGGCAACCCCATACTGCGTGAATTCGAAGTTAAGTTTACAAGAAATGGTATTGTAATGGAGAAGATACCACTTTGTGCTATTGTTGCAGAGAAGGACGAGGTCAAAGAAGACTACAAGAAATTAAGAAAAGAACATTACAAGAAGTTAGAGACAGAAGATTATAAGAAGTTAGAGAAAGAAGACTGCAAGAAGTTGGTTAAAGTACCTTACCAGAATCATTTGACACAAAATAGAATACTGTACAAAGAGAAGAATGGAAGTAGTTTTATCGCTGTACTAAAGAAGATGGAAAAAGAAATTATAAGAGAGAATCATAGAAGAGGACGACTAAAAGTTGAAGATTGGGAATGGAGGAGGTCCGATACATACGACTAG
Protein
MAPKKNNDSDEREDVEVHISFRDLEQSMTPFTGDDTYPISEFFDEFEDVADLMKWTKVERLIYAKKLLGGTAKLFLRSIGRAKDYPTLKEALIEEFGPKFNSAKIHKSLISRKIKNDETLQQYFLVMKEIAVHGRVDDAALMEYVIDGINDPESNKAILYGATDLKDFRKKLDIYSDFRKKLDVYSDLQKKMSTLSYHQVVPQVNSDAGTTSLRKPHFKRCYNCGDLDHQSPGCTKGIKYFKCNGFGHKGNECKNEVKKSLIIQKKNEEEKIPYKKVLLNRTEMVALIDTGSDANLIKHSEFEKIENNIQHYDKNSEVRLTGIANKEILIKGVFTTQLHIDNAVTDIKFYIVEDDIIPVKLIIGNPILREFEVKFTRNGIVMEKIPLCAIVAEKDEVKEDYKKLRKEHYKKLETEDYKKLEKEDCKKLVKVPYQNHLTQNRILYKEKNGSSFIAVLKKMEKEIIRENHRRGRLKVEDWEWRRSDTYD

Summary

EMBL
GBBI01004613    JAC14099.1    LBMM01004258    KMQ92652.1    GBBI01004549    JAC14163.1    + More
ABLF02014660    ABLF02042774    GDHF01023027    JAI29287.1    GAMC01016174    JAB90381.1    ABLF02011059    LBMM01010976    KMQ87102.1    GBBI01004550    JAC14162.1    GBBI01004551    JAC14161.1    GBXI01006173    JAD08119.1    GBXI01005773    JAD08519.1    GAMC01020207    JAB86348.1    ABLF02005846    AGBW02009151    OWR51557.1    GBXI01004632    JAD09660.1    GDHF01031400    JAI20914.1    KQ980852    KYN12192.1    ABLF02005127    ABLF02005129    ABLF02007401    GAMC01007326    JAB99229.1    GGFM01002109    MBW22860.1    GBBI01004477    JAC14235.1    GGFM01002486    MBW23237.1    AJWK01016333    GFTR01008753    JAW07673.1    GAKP01019383    JAC39569.1    KQ971327    KYB28419.1    AJWK01024440    GGFJ01002579    MBW51720.1    GGFJ01001952    MBW51093.1    GGFJ01002620    MBW51761.1    GGFJ01002621    MBW51762.1    GGFJ01001974    MBW51115.1    GGFJ01002514    MBW51655.1    GGFJ01002513    MBW51654.1    HACL01000135    CFW94429.1    AAAB01008984    GAMC01015907    JAB90648.1    KQ977505    KYN02276.1    GDHF01019733    JAI32581.1    GFDF01007768    JAV06316.1    GAMC01002792    JAC03764.1    GL764261    EFZ18057.1    GEHC01000930    JAV46715.1    Z27119    CAA81643.1    GGFK01005990    MBW39311.1    KQ980436    KYN16061.1    GGFJ01005354    MBW54495.1    NWSH01001951    PCG69590.1    GAKP01004913    JAC54039.1    NNAY01005459    OXU16662.1   
Pfam
PF17921   Integrase_H2C2        + More
PF00078   RVT_1
PF00098   zf-CCHC
PF17917   RT_RNaseH
PF00665   rve
PF03732   Retrotrans_gag
PF17919   RT_RNaseH_2
PF02037   SAP
PF00077   RVP
PF14392   zf-CCHC_4
PF09668   Asp_protease
Interpro
IPR041588   Integrase_H2C2        + More
IPR036397   RNaseH_sf       
IPR041373   RT_RNaseH       
IPR000477   RT_dom       
IPR021109   Peptidase_aspartic_dom_sf       
IPR012337   RNaseH-like_sf       
IPR036875   Znf_CCHC_sf       
IPR001878   Znf_CCHC       
IPR001584   Integrase_cat-core       
IPR041577   RT_RNaseH_2       
IPR005162   Retrotrans_gag_dom       
IPR036361   SAP_dom_sf       
IPR001969   Aspartic_peptidase_AS       
IPR001995   Peptidase_A2_cat       
IPR003034   SAP_dom       
IPR018061   Retropepsins       
IPR025836   Zn_knuckle_CX2CX4HX4C       
IPR019103   Peptidase_aspartic_DDI1-type       
IPR034145   RP_RTVL-H-like       
SUPFAM
SSF50630   SSF50630        + More
SSF53098   SSF53098       
SSF57756   SSF57756       
SSF68906   SSF68906       
Gene 3D
PDB
2LLI     E-value=0.0365465,     Score=88

Ontologies

Topology

Length:
487
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.01458
Exp number, first 60 AAs:
0.0001
Total prob of N-in:
0.01076
outside
1  -  487
 
 

Population Genetic Test Statistics

Pi
239.164619
Theta
157.200797
Tajima's D
1.557833
CLR
0.488838
CSRT
0.803309834508275
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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