Gene

KWMTBOMO08938

Annotation

endonuclease-reverse_transcriptase_[Bombyx_mori]

Location

Bomo_Chr15(-):8471617-8472987      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 1.128 Nuclear   Reliability : 1.733

CDS

ATGCTAGTCAGCAAACCCAGGAGCAAAGAAAGCTATTTAAGCAAGGAGACACTAGAACTATTGGATAAAAGAAGAACACTAATATCAAATAAAGGGGATAAAGAAAGACGCCAAAAAATTGCAAACCTTAGCAAGAAAATTAAGGAGAATATAAGAAAAGACCGTAGAGAGAAAAGAAATAGTGTTTTAGAAGAAAATATAAAAAGAACAGGAGGAACAAAAAAGGCTCTGAAGCAACTAAGCGAACATGGGAAAGAATGGATATTGAAACTGAACCAACGCGAATCTAACTTAATTAACCGACTCTCAATACTGAAACTAGCCACGGACTATTACCGCCTATTGTATTCTGATAAATTAGGTTCAGGGTTGGACACAATTCCGGAAGTTTACGAACCAAATGAAAACAAAGTAGACGAAGTGCCAGAGATCCTTGCCTCAGAGGTAACCAAGGCAATAAAATCCCAAAAACTCGAGAAAGCTCCAGGGCCGGACAAGATACCTAACGAAATGCTTAAGGGAACTTTAGAGGAAATCAGTCCTGTGCTGGCAAAACTCTTCAATGAAATCCTACAAACAAGGCAAATCCCAGAAGAATGGACCGAGTGCCACATAATTTTACTACATAAAAAAGGCACTAGAGACGAGATTGGGAACTATAGGCCAATTTCTCTAATATCAAACATATATAAAGTATTTGCTAAAGTGATCCTGGAAAGAATATCATTAACGCTAAATGAAAGCCAACCCGCAGAGCAGGCAGGATTCAGAAAAGGCTTCAGCACAATAGATCATATTCACACAATAAAACAGTTGATACAGAAGTATAATGAATACAATAAACAAATATACTTGGCGTTCATAGATTACTCAAAGGCATTCGATAGCCTCAGGCACCAATACATATGGCGGAGTCTTGAACAACAAGGAGTCCAGAGCAACTATATAGAAATACTCAAGAGTATATATAAATCTAGCAAGGCCAGTATCAAACTTGAATAA

Protein

MLVSKPRSKESYLSKETLELLDKRRTLISNKGDKERRQKIANLSKKIKENIRKDRREKRNSVLEENIKRTGGTKKALKQLSEHGKEWILKLNQRESNLINRLSILKLATDYYRLLYSDKLGSGLDTIPEVYEPNENKVDEVPEILASEVTKAIKSQKLEKAPGPDKIPNEMLKGTLEEISPVLAKLFNEILQTRQIPEEWTECHIILLHKKGTRDEIGNYRPISLISNIYKVFAKVILERISLTLNESQPAEQAGFRKGFSTIDHIHTIKQLIQKYNEYNKQIYLAFIDYSKAFDSLRHQYIWRSLEQQGVQSNYIEILKSIYKSSKASIKLE

Uniprot

D7F179   A0A2W1BCS2   D7F176   D7F177   A0A2H1WF27   A0A2W1BGR8   + More
D7F178   A0A2W1BZV1   A0A069DZM5   A0A016WIQ2   A0A2W1B5F8   A0A023EXV2   A0A3P8U2M2   W4YXJ0   A0A2H1VS24   A0A016S403   A0A1S3JIQ3   A0A016U784   A0A016T4J8   A0A0N5BPB7   A0A3S2N805   W6NH91   A0A3P9LQX3   A0A1S3HCU5   A0A016UC68   A0A016SPR9   D7F157   A0A016SGC3   A0A016VX03   A0A016T590   A0A016U770   A0A016TL37   A0A016UE07   A0A016UE80   A0A016UGM6   A0A016WJ78   A0A0N5C0B1   A0A016SSP6   A0A016TXK2   A0A016VW83   A0A016UY78   A0A016WMA1   A0A016VAJ8   A0A016TIG5   A0A016WFS9   A0A016S5A1   A0A016U009   A0A2G8JFM9   A0A016VCD9   A0A016WKT9   A0A016VEC1   A0A016URJ9   A0A016SWH8   A0A016T5Z1   A0A016US53   A0A016T636   A0A016S331   A0A016WVQ3   A0A016UEM0   A0A016S1X9   A0A016S208   A0A016USJ4   A0A016URH5   A0A016UA47   A0A016UQI0   A0A016X207   A0A016V9W0   A0A016WRX9   A0A016VCU3   A0A016VB23   A0A016TL35   A0A016UJS4   A0A016WW86   A0A016T4C4   A0A016WUN2   A0A016U6B7   A0A016VT25   A0A016V007   A0A016WYN9   A0A016W1X2   A0A016SY13   A0A016TK92   A0A016S4W9   A0A016TQJ1   A0A016SCL7   A0A016SCZ8   A0A016U123   A0A016VLP0   A0A016VBP7   A0A016S7F6   A0A016S1D2   A0A016WQM8   A0A016SX67   D7F166   A0A016TX70   A0A016W5S4  

Pubmed

20470440    28756777    26334808    25730766    25474469    17554307    + More
29023486   

EMBL

FJ265564    ADI61832.1    KZ150485    PZC70710.1    FJ265561    ADI61829.1    + More
FJ265562    ADI61830.1    ODYU01008249    SOQ51673.1    KZ150191    PZC72397.1    FJ265563    ADI61831.1    KZ149907    PZC78256.1    GBGD01000380    JAC88509.1    JARK01000254    EYC39481.1    KZ150317    PZC71439.1    GBBI01004876    JAC13836.1    AAGJ04050748    ODYU01004088    SOQ43598.1    JARK01001639    EYB85201.1    JARK01001389    EYC11015.1    JARK01001471    EYB97918.1    RSAL01001818    RVE40675.1    CAVP010059842    CDL96135.1    JARK01001383    EYC12427.1    JARK01001531    EYB92324.1    FJ265542    ADI61810.1    JARK01001568    EYB89432.1    JARK01001340    EYC31303.1    JARK01001473    EYB97806.1    JARK01001388    EYC11159.1    JARK01001430    EYC03362.1    JARK01001380    EYC13156.1    EYC13157.1    JARK01001378    EYC13977.1    JARK01000247    EYC39651.1    JARK01001517    EYB93530.1    JARK01001406    EYC07496.1    EYC31302.1    JARK01001359    EYC20105.1    JARK01000188    EYC40939.1    JARK01001350    EYC24455.1    JARK01001435    EYC02496.1    JARK01000302    EYC38674.1    JARK01001630    EYB85641.1    JARK01001404    EYC07943.1    MRZV01002136    PIK34564.1    JARK01001348    EYC25050.1    JARK01000248    EYC39628.1    EYC25048.1    JARK01001366    EYC17452.1    JARK01001502    EYB94855.1    JARK01001470    JARK01000204    EYB98082.1    EYC40602.1    JARK01001365    EYC18010.1    EYB98081.1    EYC40601.1    JARK01001648    EYB84654.1    JARK01000077    EYC43894.1    EYC13322.1    EYB84655.1    EYB84653.1    EYC17448.1    EYC18009.1    JARK01001384    EYC12189.1    EYC17450.1    JARK01000008    EYC46079.1    EYC24454.1    JARK01000132    EYC42415.1    EYC25046.1    EYC24456.1    JARK01001428    EYC03684.1    JARK01001372    EYC15614.1    JARK01000078    EYC43871.1    JARK01001475    EYB97550.1    JARK01000109    EYC42952.1    EYC10874.1    EYC30744.1    JARK01001357    EYC20551.1    JARK01000063    EYC44387.1    JARK01001338    EYC33297.1    JARK01001497    EYB95322.1    JARK01001432    EYC03125.1    JARK01001637    EYB85284.1    JARK01001421    EYC04912.1    JARK01001628    JARK01001583    JARK01001528    JARK01001506    JARK01001467    JARK01001463    JARK01001457    JARK01001420    JARK01001403    JARK01001371    JARK01001369    JARK01001360    JARK01001353    JARK01001349    JARK01000603    JARK01000080    EYB85741.1    EYB88438.1    EYB92544.1    EYB94540.1    EYB98080.1    EYB98468.1    EYB98899.1    EYB99568.1    EYC03088.1    EYC05014.1    EYC08153.1    EYC15852.1    EYC16408.1    EYC19456.1    EYC22445.1    EYC24734.1    EYC24778.1    EYC24866.1    EYC33488.1    EYC35672.1    EYC43798.1    JARK01001581    EYB88505.1    JARK01001401    EYC08686.1    JARK01001344    EYC28216.1    EYC25049.1    JARK01001612    EYB86585.1    JARK01001655    EYB84321.1    JARK01000165    EYC41537.1    JARK01001500    JARK01001343    EYB95040.1    EYC28825.1    FJ265551    ADI61819.1    JARK01001407    EYC07212.1    JARK01000802    EYC34990.1   

Proteomes

UP000024635    UP000265080    UP000007110    UP000085678    UP000046392    UP000283053    + More
UP000025227    UP000265180    UP000230750   

PRIDE

D7F179    D7F176    D7F177    D7F178    D7F157    D7F166    + More

Pfam

PF14529   Exo_endo_phos_2        + More
PF00078   RVT_1
PF05047   L51_S25_CI-B8

Interpro

IPR005135   Endo/exonuclease/phosphatase        + More
IPR036691   Endo/exonu/phosph_ase_sf       
IPR000477   RT_dom       
IPR016186   C-type_lectin-like/link_sf       
IPR016187   CTDL_fold       
IPR029052   Metallo-depent_PP-like       
IPR007741   Ribosome/NADH_DH       
IPR036249   Thioredoxin-like_sf       

SUPFAM

SSF56219   SSF56219        + More
SSF56436   SSF56436       
SSF52833   SSF52833       

Gene 3D

3.60.10.10     3.10.100.10     3.60.21.10    

ProteinModelPortal

D7F179   A0A2W1BCS2   D7F176   D7F177   A0A2H1WF27   A0A2W1BGR8   + More
D7F178   A0A2W1BZV1   A0A069DZM5   A0A016WIQ2   A0A2W1B5F8   A0A023EXV2   A0A3P8U2M2   W4YXJ0   A0A2H1VS24   A0A016S403   A0A1S3JIQ3   A0A016U784   A0A016T4J8   A0A0N5BPB7   A0A3S2N805   W6NH91   A0A3P9LQX3   A0A1S3HCU5   A0A016UC68   A0A016SPR9   D7F157   A0A016SGC3   A0A016VX03   A0A016T590   A0A016U770   A0A016TL37   A0A016UE07   A0A016UE80   A0A016UGM6   A0A016WJ78   A0A0N5C0B1   A0A016SSP6   A0A016TXK2   A0A016VW83   A0A016UY78   A0A016WMA1   A0A016VAJ8   A0A016TIG5   A0A016WFS9   A0A016S5A1   A0A016U009   A0A2G8JFM9   A0A016VCD9   A0A016WKT9   A0A016VEC1   A0A016URJ9   A0A016SWH8   A0A016T5Z1   A0A016US53   A0A016T636   A0A016S331   A0A016WVQ3   A0A016UEM0   A0A016S1X9   A0A016S208   A0A016USJ4   A0A016URH5   A0A016UA47   A0A016UQI0   A0A016X207   A0A016V9W0   A0A016WRX9   A0A016VCU3   A0A016VB23   A0A016TL35   A0A016UJS4   A0A016WW86   A0A016T4C4   A0A016WUN2   A0A016U6B7   A0A016VT25   A0A016V007   A0A016WYN9   A0A016W1X2   A0A016SY13   A0A016TK92   A0A016S4W9   A0A016TQJ1   A0A016SCL7   A0A016SCZ8   A0A016U123   A0A016VLP0   A0A016VBP7   A0A016S7F6   A0A016S1D2   A0A016WQM8   A0A016SX67   D7F166   A0A016TX70   A0A016W5S4  

KEGG

101738666    no KO assigned | (RefSeq) RNA-directed DNA polymerase from mobile element jockey-like

GO

GO:0003964   GO:0004519  

Length:

333

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00267

Exp number, first 60 AAs:

0

Total prob of N-in:

0.02137

outside

1  -  333

 

 

Pi

172.496535

Theta

70.443142

Tajima's D

3.389555

CLR

0

CSRT

0.992850357482126

Interpretation

Uncertain