Silkworm Genome Informatics Database

Gene

KWMTBOMO08936 Validated by peptides from experiments

Pre Gene Modal

BGIBMGA007805

Annotation

hypothetical_protein_OBRU01_20383_[Operophtera_brumata]

Location

Bomo_Chr15(-):8430431-8434803 View in EpiBrowser

Transcription factor

zf-LITAF-like

Location in the cell

Extracellular Reliability : 2.641

CDS

ATGGACGCGACGATGGAAAATAAAATGGGATTACCGCCACCATATGAACAATCGGTACCGAATCCAGCTCCGCCTCCTTCGTACTTTGGCAATAATCCACCACCGCCTGCCGGTTTCGTTGCTCCCGAAGCACCTCCGCGTACTACAGTGATAACATCACCCCAAGCACCGGCAGGACCACCAGGAAAGCTAGGCCCAGGGCCAACGGGCACTACGTGTCAAACGTGCAACAAAACAGTAGTCACCAGAGTGGACTATGTTCCAAATAACAGAACACACATTATATCGGCAGCTCTCTGTATTTTAGCTGGATGCTGTTGCGGGTGTTTCGTTCCGTATTGCATGAGATCGTGTAAAACAGCCAATCATTACTGTCCTCAATGTAAAGCATTCGTCGGTGCTTTCACCCCATCTTAG

Protein

MDATMENKMGLPPPYEQSVPNPAPPPSYFGNNPPPPAGFVAPEAPPRTTVITSPQAPAGPPGKLGPGPTGTTCQTCNKTVVTRVDYVPNNRTHIISAALCILAGCCCGCFVPYCMRSCKTANHYCPQCKAFVGAFTPS

Uniprot

A0A2H1W2I3 A0A0L7KSV8 S4PAK4 A0A3S2LPD2 A0A1E1W8C5 I4DPT9 + More
A0A212ES66 A0A194PQ83 A0A194R8G0 A0A023EH32 A0A182GCI1 A0A182VSL0 A0A2A4JW93 A0A182YMU5

Pubmed

26227816 23622113 22651552 22118469 26354079 24945155 + More
26483478 25244985

EMBL

ODYU01005917 SOQ47310.1 JTDY01006242 KOB66175.1 GAIX01004966 JAA87594.1 + More
RSAL01000488 RVE41553.1 GDQN01007802 JAT83252.1 AK403777 BAM19929.1 AGBW02012849 OWR44333.1 KQ459602 KPI93295.1 KQ460615 KPJ13540.1 GAPW01005437 JAC08161.1 JXUM01054326 JXUM01054327 JXUM01054328 JXUM01054329 KQ561816 KXJ77440.1 NWSH01000518 PCG75904.1

Proteomes

UP000037510 UP000283053 UP000007151 UP000053268 UP000053240 UP000069940 + More
UP000249989 UP000075920 UP000218220 UP000076408

Pfam

PF10601 zf-LITAF-like

Interpro

IPR037519 LITAF_fam + More
IPR006629 LITAF

ProteinModelPortal

A0A2H1W2I3 A0A0L7KSV8 S4PAK4 A0A3S2LPD2 A0A1E1W8C5 I4DPT9 + More
A0A212ES66 A0A194PQ83 A0A194R8G0 A0A023EH32 A0A182GCI1 A0A182VSL0 A0A2A4JW93 A0A182YMU5

KEGG

101736893 K19363 lipopolysaccharide-induced tumor necrosis factor-alpha factor | (RefSeq) lipopolysaccharide-i

PATHWAY

04142 Lysosome - Bombyx mori (domestic silkworm)

GO

GO:0016021

PANTHER

PTHR23292

Length:

138

Number of predicted TMHs:

1

Exp number of AAs in TMHs:

20.96225

Exp number, first 60 AAs:

0

Total prob of N-in:

0.36449

outside

1 - 91

TMhelix

92 - 114

inside

115 - 138

Pi

194.724657

Theta

194.026717

Tajima's D

0.043366

CLR

0.287129

CSRT

0.385880705964702

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics