Gene

KWMTBOMO08931

Pre Gene Modal

BGIBMGA007807

Annotation

PREDICTED:_presenilins-associated_rhomboid-like_protein?_mitochondrial_isoform_X1_[Bombyx_mori]

Location

Bomo_Chr15(-):8388164-8392773      View in EpiBrowser

Location in the cell

PlasmaMembrane   Reliability : 3.812

CDS

ATGTTTTCTAGAACTTTAAATGTTTCCGCAAATATTTGCAAACCACCACTATTCAATCAAGTTTGGCTTCCACCTAAGAACGGTCGATTGATCCGTAATTCATTTCACAATTCAAAAAGAGGTTCGCGGCAAGCTCTGAAACCTGACCCTTTGGAAAATCTACATATTGAAACTGGCCCGTTACATGCGAAAGGATTAGTGAAACCGCTTATTTTTACTGTGGGAGTCTCAGCAGCCAGTTTACTAGGCTGTGTAATATGGGAATATGAGAATCTACGGGTTCACGCTTCTTCACTACTACGAAGACCAGGAACGTGGCTGACTGCACAACAAAAAAAAAGTAAATCAGAGCCTGGTCCATTGAAAAAATGGTGGAACTCACTACGGGATAATGAGAAGGTGTTTTATCCAATTTTAGCTGCTAACTTACTAGTATTTGGAGCATGGCGCATTAGAGCTCTACAGCCTTTTATGGTCAAATACTTCTGTTCCAATCCTTCAGGAGGTGCAGTATGTCTTCCGATGGTTCTTTCAACATTCAGCCATTATTCACCATTGCACCTGGCTGCCAATATGTATGTTCTTTATAGTTTCATGCCTGCTGCTTTATCTTCAATGGGCAAAGAACAATTTACAGCCATGTATCTCAGTGCCGGTGTCATAAGCAGTTTTGCTAGTTTTCTTTACAAGGTTATGCTAAATCAACCAGGATTAAGCCTTGGAGCATCTGGTGCAATCATGTCAGTGCTGTCTTATGTGTGTATGCAATACCCCGACACAAAACTAAGCATCATATTTTTACCAATGTACACTTTTGCGGCTGGTTCTGCAATCAAAGTTATAATGGGAATAGATCTGGCTGGTGTTGTCTTGGGTTGGAAGTTCTTTGATCATGCTGCTCATCTTGGTGGAGCTATATTTGGAATTATATGGTGCCAATGGGGTTATTCTCACGTATGGGGTAACAGAGACAAATTCCTCCAGTATTATCACCACTTTAGAAAAAGCGATCCCGGAAGGTAG

Protein

MFSRTLNVSANICKPPLFNQVWLPPKNGRLIRNSFHNSKRGSRQALKPDPLENLHIETGPLHAKGLVKPLIFTVGVSAASLLGCVIWEYENLRVHASSLLRRPGTWLTAQQKKSKSEPGPLKKWWNSLRDNEKVFYPILAANLLVFGAWRIRALQPFMVKYFCSNPSGGAVCLPMVLSTFSHYSPLHLAANMYVLYSFMPAALSSMGKEQFTAMYLSAGVISSFASFLYKVMLNQPGLSLGASGAIMSVLSYVCMQYPDTKLSIIFLPMYTFAAGSAIKVIMGIDLAGVVLGWKFFDHAAHLGGAIFGIIWCQWGYSHVWGNRDKFLQYYHHFRKSDPGR

Similarity

Belongs to the synaptobrevin family.

Uniprot

A0A3S2LWI9   A0A194RCA1   A0A2A4JPJ0   A0A194PIZ5   I4DL50   A0A212ELH1   + More
G3JWY3   A0A2P8XJE4   A0A1Y1MNY9   D6WL40   A0A182NRE1   A0A182PI63   A0A182QPL7   A0A182STB1   A0A182V8Q2   A0A182Y6L5   A0A182TQ58   A0A182HSG9   A0A182KCN9   A0A182LEH8   A0A182XAM8   Q7QCH5   A0A1Q3FEU1   A0A182RXQ3   A0A084W6L4   A0A0V0G6C3   Q16I97   A0A2J7Q205   A0A0P4VLT5   R4FLP2   A0A2M4ASR3   A0A2M4ASS3   B0X7U0   A0A2M4BSW3   A0A182W0T2   W5J9B7   A0A182FPB9   A0A182IL98   A0A336K0Q3   A0A182M9Q5   A0A1L8DTM3   A0A1W4WZ51   A0A2M4BS76   A0A1L8DTW0   U4UTS1   A0A067QYA2   A0A023ERX6   A0A182GQK3   A0A195C2S4   A0A0L0CM32   F4WD26   A0A151XDF7   A0A1B0DMJ2   A0A1I8N9M6   A0A1I8QA46   A0A158NID5   A0A1B6E5C0   A0A1A9WBA4   A0A1B0A7I5   A0A195BFG7   A0A1B0FQP0   B4MDW5   B4J3U7   A0A1A9UY58   A0A0Q9WAZ1   B4KSE3   A0A0A1XJQ2   B4MYM0   E0VBZ6   A0A0K8WF12   E1ZX17   A0A3L8DCW6   A0A2R7W342   A0A0R3NP36   Q28YK6   A0A034VGR2   G3WN22   A0A1I8QA10   W8C932   A0A146M7U5   B4HNW2   B4QC61   B4H8I2   A0A1W4UNP1   B3MG48   A1Z8R8   A0A3P8WEV8   Q8MQY3   A0A0M4E448   B4P5R1   A0A0P6CNX2   K9IXI8   A0A2D0STN9   A0A1J1IBW2   A0A1W4Z3M9   A0A151JNT4   B3NSA1  

Pubmed

26354079    22651552    22118469    21840855    29403074    28004739    + More
18362917    19820115    25244985    20966253    12364791    14747013    17210077    24438588    17510324    27129103    20920257    23761445    23537049    24845553    24945155    26483478    26108605    21719571    25315136    21347285    17994087    25830018    20566863    20798317    30249741    15632085    25348373    21709235    24495485    26823975    22936249    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    24487278    17550304   

EMBL

RSAL01000157    RVE45586.1    KQ460615    KPJ13536.1    NWSH01000840    PCG73921.1    + More
KQ459602    KPI93292.1    AK402018    BAM18640.1    AGBW02014057    OWR42336.1    JN030492    AEI27594.1    PYGN01001923    PSN32127.1    GEZM01025721    JAV87371.1    KQ971343    EFA03514.2    AXCN02001464    APCN01000278    AAAB01008859    EAA08059.4    GFDL01008971    JAV26074.1    ATLV01020849    KE525308    KFB45858.1    GECL01002884    JAP03240.1    CH478095    EAT33981.1    NEVH01019374    PNF22625.1    GDKW01003201    JAI53394.1    ACPB03015003    GAHY01002059    JAA75451.1    GGFK01010479    MBW43800.1    GGFK01010510    MBW43831.1    DS232463    EDS42159.1    GGFJ01006717    MBW55858.1    ADMH02002014    ETN59988.1    UFQS01000046    UFQT01000046    SSW98524.1    SSX18910.1    AXCM01000472    GFDF01004271    JAV09813.1    GGFJ01006721    MBW55862.1    GFDF01004270    JAV09814.1    KB632364    ERL93545.1    KK852880    KDR14418.1    GAPW01002137    JAC11461.1    JXUM01080774    KQ563206    KXJ74289.1    KQ978379    KYM94488.1    JRES01000204    KNC33302.1    GL888081    EGI67898.1    KQ982294    KYQ58395.1    AJVK01016832    ADTU01016577    GEDC01004190    JAS33108.1    KQ976491    KYM83321.1    CCAG010009454    CH940662    EDW58730.1    CH916367    EDW01530.1    KRF78436.1    CH933808    EDW08425.1    GBXI01003115    JAD11177.1    CH963894    EDW77209.2    DS235044    EEB10902.1    GDHF01002670    JAI49644.1    GL434950    EFN74267.1    QOIP01000010    RLU18171.1    KK854259    PTY13848.1    CM000071    KRT02699.1    EAL25960.2    GAKP01018239    JAC40713.1    AEFK01178545    AEFK01178546    AEFK01178547    GAMC01006996    JAB99559.1    GDHC01003989    JAQ14640.1    CH480816    EDW47477.1    CM000362    CM002911    EDX06692.1    KMY93071.1    CH479223    EDW35017.1    CH902619    EDV36743.1    AE013599    AAF58598.1    AHN56122.1    AY122236    AAM52748.1    CP012524    ALC40728.1    CM000158    EDW90858.1    GDIQ01088905    JAN05832.1    GABZ01006579    JAA46946.1    CVRI01000047    CRK97720.1    KQ978834    KYN28021.1    CH954179    EDV56403.1   

Proteomes

UP000283053    UP000053240    UP000218220    UP000053268    UP000007151    UP000245037    + More
UP000007266    UP000075884    UP000075885    UP000075886    UP000075901    UP000075903    UP000076408    UP000075902    UP000075840    UP000075881    UP000075882    UP000076407    UP000007062    UP000075900    UP000030765    UP000008820    UP000235965    UP000015103    UP000002320    UP000075920    UP000000673    UP000069272    UP000075880    UP000075883    UP000192223    UP000030742    UP000027135    UP000069940    UP000249989    UP000078542    UP000037069    UP000007755    UP000075809    UP000092462    UP000095301    UP000095300    UP000005205    UP000091820    UP000092445    UP000078540    UP000092444    UP000008792    UP000001070    UP000078200    UP000009192    UP000007798    UP000009046    UP000000311    UP000279307    UP000001819    UP000007648    UP000001292    UP000000304    UP000008744    UP000192221    UP000007801    UP000000803    UP000265120    UP000092553    UP000002282    UP000221080    UP000183832    UP000192224    UP000078492    UP000008711   

PRIDE

A1Z8R8    Q8MQY3   

Pfam

PF01694   Rhomboid        + More
PF07000   DUF1308
PF18474   DUF5614
PF00756   Esterase
PF13774   Longin
PF00957   Synaptobrevin

Interpro

IPR035952   Rhomboid-like_sf        + More
IPR022764   Peptidase_S54_rhomboid_dom       
IPR000801   Esterase_put       
IPR010733   DUF1308       
IPR041076   DUF5614       
IPR014186   S-formylglutathione_hydrol       
IPR029058   AB_hydrolase       
IPR010908   Longin_dom       
IPR001388   Synaptobrevin       
IPR011012   Longin-like_dom_sf       

SUPFAM

SSF53474   SSF53474        + More
SSF64356   SSF64356       

Gene 3D

1.20.1540.10     3.40.50.1820    

ProteinModelPortal

A0A3S2LWI9   A0A194RCA1   A0A2A4JPJ0   A0A194PIZ5   I4DL50   A0A212ELH1   + More
G3JWY3   A0A2P8XJE4   A0A1Y1MNY9   D6WL40   A0A182NRE1   A0A182PI63   A0A182QPL7   A0A182STB1   A0A182V8Q2   A0A182Y6L5   A0A182TQ58   A0A182HSG9   A0A182KCN9   A0A182LEH8   A0A182XAM8   Q7QCH5   A0A1Q3FEU1   A0A182RXQ3   A0A084W6L4   A0A0V0G6C3   Q16I97   A0A2J7Q205   A0A0P4VLT5   R4FLP2   A0A2M4ASR3   A0A2M4ASS3   B0X7U0   A0A2M4BSW3   A0A182W0T2   W5J9B7   A0A182FPB9   A0A182IL98   A0A336K0Q3   A0A182M9Q5   A0A1L8DTM3   A0A1W4WZ51   A0A2M4BS76   A0A1L8DTW0   U4UTS1   A0A067QYA2   A0A023ERX6   A0A182GQK3   A0A195C2S4   A0A0L0CM32   F4WD26   A0A151XDF7   A0A1B0DMJ2   A0A1I8N9M6   A0A1I8QA46   A0A158NID5   A0A1B6E5C0   A0A1A9WBA4   A0A1B0A7I5   A0A195BFG7   A0A1B0FQP0   B4MDW5   B4J3U7   A0A1A9UY58   A0A0Q9WAZ1   B4KSE3   A0A0A1XJQ2   B4MYM0   E0VBZ6   A0A0K8WF12   E1ZX17   A0A3L8DCW6   A0A2R7W342   A0A0R3NP36   Q28YK6   A0A034VGR2   G3WN22   A0A1I8QA10   W8C932   A0A146M7U5   B4HNW2   B4QC61   B4H8I2   A0A1W4UNP1   B3MG48   A1Z8R8   A0A3P8WEV8   Q8MQY3   A0A0M4E448   B4P5R1   A0A0P6CNX2   K9IXI8   A0A2D0STN9   A0A1J1IBW2   A0A1W4Z3M9   A0A151JNT4   B3NSA1  

KEGG

101737402    K09650 rhomboid-like protein [EC:3.4.21.105] | (RefSeq) presenilins-associated rhomboid-like protein

GO

GO:0016021   GO:0004252   GO:0010821   GO:0005743   GO:0005739   GO:0018738   GO:0046294   GO:0008053   GO:0016485   GO:0004175   GO:0016192   GO:0017137   GO:0016813   GO:0016020   GO:0016817   GO:0008270   GO:0043565   GO:0016876   GO:0043039  

Length:

340

Number of predicted TMHs:

6

Exp number of AAs in TMHs:

137.90915

Exp number, first 60 AAs:

0.0142

Total prob of N-in:

0.36127

inside

1  -  133

TMhelix

134  -  153

outside

154  -  167

TMhelix

168  -  190

inside

191  -  210

TMhelix

211  -  233

outside

234  -  237

TMhelix

238  -  255

inside

256  -  261

TMhelix

262  -  284

outside

285  -  298

TMhelix

299  -  321

inside

322  -  340

 

 

Pi

269.576118

Theta

201.09313

Tajima's D

1.205722

CLR

1.353305

CSRT

0.713814309284536

Interpretation

Uncertain